|
|
Homology
BLAST of mRNA_E_fasciculatus_S2_contig6778.14899.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ2_9PHAE) HSP 1 Score: 335 bits (858), Expect = 1.300e-107 Identity = 196/240 (81.67%), Postives = 206/240 (85.83%), Query Frame = 1
Query: 1 WFLWVAAFCVLVAICGLCSCYVVTPVVRSCRERFGVKHGWKPKGVVVRQEQHQRXXXXXXXXXXXXXXXXXXDRGRPRGTGERERGDARDSKSHHQRYHHWYLDDLLKITPEDEVEFGVRHSPAYTATPTPRVARTASGLAPQSRRHQYRPQHRPQEKRRASFPMSSMSSSGESCSRSVLSAPARRKSSXXXXXXXHAHNRRRSVSSGTRREVTVVDEPGIGAEATLRGGGWMGAANGRL 720
WFLWVAAFCVLVAICGLCSCY+VTP+VRSCRE GV+HG +PKGVVVRQ+QH XXXXXXXXXXXXXXXXX RPR TGERE+ DARDSKSH QR+HHWYLDDLLKITPEDEVEFGVRHSPAYT TPTPR +RTASGLAPQSRRH PQHRP+E RRASFPMSSMSS GE CSRSVL AP RRKSS HAHNR SVSS TRR V VVD+PGIGAEATLRGGGWMGAANGRL
Sbjct: 299 WFLWVAAFCVLVAICGLCSCYMVTPLVRSCRELLGVEHGRQPKGVVVRQDQHVHQXXXXXXXXXXXXXXXXX---RPRETGEREKCDARDSKSHRQRHHHWYLDDLLKITPEDEVEFGVRHSPAYTVTPTPRASRTASGLAPQSRRHNNHPQHRPRE-RRASFPMSSMSSRGEPCSRSVLPAPVRRKSSDNYYDDYHAHNRSHSVSSETRRAVAVVDDPGIGAEATLRGGGWMGAANGRL 534
BLAST of mRNA_E_fasciculatus_S2_contig6778.14899.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMW1_ECTSI) HSP 1 Score: 58.5 bits (140), Expect = 4.880e-8 Identity = 22/22 (100.00%), Postives = 22/22 (100.00%), Query Frame = 2
Query: 2 GFYGWQLSACWWRSAGCAPATW 67
GFYGWQLSACWWRSAGCAPATW
Sbjct: 3 GFYGWQLSACWWRSAGCAPATW 24
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 0 |
| Model size | 1125 |
| Hectar predicted targeting category | signal peptide |
| Exons | 4 |
| Cds size | 723 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1696842334.6360726-UTR-E_fasciculatus_S2_contig6778:4..259 | 1696842334.6360726-UTR-E_fasciculatus_S2_contig6778:4..259 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig6778 5..259 - |
| 1696842334.655197-UTR-E_fasciculatus_S2_contig6778:311..456 | 1696842334.655197-UTR-E_fasciculatus_S2_contig6778:311..456 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig6778 312..456 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1696842334.6652493-CDS-E_fasciculatus_S2_contig6778:456..903 | 1696842334.6652493-CDS-E_fasciculatus_S2_contig6778:456..903 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig6778 457..903 - |
| 1696842334.674022-CDS-E_fasciculatus_S2_contig6778:1374..1535 | 1696842334.674022-CDS-E_fasciculatus_S2_contig6778:1374..1535 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig6778 1375..1535 - |
| 1696842334.6865046-CDS-E_fasciculatus_S2_contig6778:2393..2508 | 1696842334.6865046-CDS-E_fasciculatus_S2_contig6778:2393..2508 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig6778 2394..2508 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig6778.14899.1 >prot_E_fasciculatus_S2_contig6778.14899.1 ID=prot_E_fasciculatus_S2_contig6778.14899.1|Name=mRNA_E_fasciculatus_S2_contig6778.14899.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=241bp
WFLWVAAFCVLVAICGLCSCYVVTPVVRSCRERFGVKHGWKPKGVVVRQE
QHQRHEKHQQQQHQLQQQQQQPDRGRPRGTGERERGDARDSKSHHQRYHH
WYLDDLLKITPEDEVEFGVRHSPAYTATPTPRVARTASGLAPQSRRHQYR
PQHRPQEKRRASFPMSSMSSSGESCSRSVLSAPARRKSSDYYYDDYHAHN
RRRSVSSGTRREVTVVDEPGIGAEATLRGGGWMGAANGRL* back to topmRNA from alignment at E_fasciculatus_S2_contig6778:5..2508- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E_fasciculatus_S2_contig6778.14899.1 ID=mRNA_E_fasciculatus_S2_contig6778.14899.1|Name=mRNA_E_fasciculatus_S2_contig6778.14899.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2504bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6778:5..2508- (Ectocarpus fasciculatus EfasUO2)
TGGTTTCTATGGGTGGCAGCTTTCTGCGTGTTGGTGGCGATCTGCGGGCT
GTGCTCCTGCTACGTGGTGACCCCGGTTGTTCGAAGTTGCCGGGAGCGTT
TCGGCGTGAAACATGGTAAAAATCCGGTTTTTTGTTGTTGCTCGTCTTTT
TGGGACAAGATCCGATTCACCCTTTTCACTGACCGCACACATACTACTGG
CGTACGTTTCGCTTCTGATAAATGTCGAACGAACACCTCGTTGGAGAATT
GTGACGACATAGGCGCGTCTGGTCTTGCCCTGCTTATCCCATTGGCGAGT
TGCCACCGGTCATCACTGCAAGACTCATGACGGCAGGGGTTGACGAGCGC
CCTTGAGGGAGGAATTTGTCTCCAACGGGCAAATTGCGGGAGTTATCTAG
AAACGATACGGCAAACCTCTCAGGGTTGAAGTACCCAAGAACCATGCCAC
GCCGTTCCGCTTACCCCGGCCCGGTGTTTGGTACACTCCAGCCGTCCGGC
CGTTCGTCCGATCACTCGTTGTGTCGTTCCGTGTTTCCGACTCGGTAGCG
TGTGCAGCCCGGATGATTGTTTGTCGCGAACTACCCACATCAAGTGGAAG
AAACCCATTAACAGAAGCCTAAGTGGCCCACCACACCAGATCAGAGAACC
GAGATCCATGAGCGTGTCCCGCTACTCTGCCCCCTTTCGGGGTCCCGTGC
ATGGTATCTCGTCGAGCTGATATTCTGGGAACTGTCAACCTTGAAGTAGG
GCAGGTACTACATGTGTGGCCGGCTTCTTCGATTGTTGCCGTATCATCGC
GCACCAGTAGTCGATTTCCGTCGCCAACCTGGTCCTGAGTTGCCAGGAGC
GCTCCTTTATACCTCTCGTTCACCTGCTACCACGCGCTAAATAGAAATAT
CAACCCCTTCCCGCAGAGGCCCTAACACGTTCCAATCTATCCGTCACTTG
AAACTGTTGCTTGCCTGGGTCAGGGTGGAAACCAAAGGGCGTCGTCGTAC
GGCAGGAGCAGCACCAGCGCCATGAGAAGCACCAGCAGCAGCAGCACCAG
CTACAACAACAACAGCAACAACCGGATCGTGGTCGACCGCGAGGAACAGG
AGAGAGGGAAAGAGGCGATGCCCGAGACAGTAAGGTGAGCGTTGTGTTGT
CGTGGGTGGAGATCCAAGAGGACGCATGACAACCAACCCCTTCTCGGCAA
GTTCGGCTAAGAGATATTGTCTATGTGTCTCGCGGCCACTCCAAGCATAA
GAACGTACACCAGTAGGGACACCAACATCATCGCCGATGTCTGCGCCGAA
AAGGATGAAGCAGCAGACGGCGTTTCGACAAACCAAACGAGAAGAGTATT
AAGGGTAGCGTGTAGTACATTGTGGTCTTAGTCAGTTCATTTTTCCAGAC
TTGGAACGCCAGGTACACGCACGGTCGAAACACGCTGGTGCATTCATAGC
ACAGGGGCACACAGCTGATGACAGCACCGCTACAGATTGCTCCACTTTTC
ATCGTATCTCCGTTTCCGTCGACCCTGGCTCCCGTCCCTCAATGCGCCCA
CGCCTCGGCGTGCCCTGCCGTGCGCCTGAACACACGTATGCACGCGCGGT
CGAAGTCACACCACCAACGCTACCACCACTGGTACCTTGACGATCTCCTC
AAGATTACTCCCGAAGATGAGGTTGAGTTCGGAGTGCGCCATTCCCCGGC
CTACACCGCGACGCCAACGCCAAGGGTGGCCAGAACAGCTTCGGGCTTGG
CGCCGCAGTCACGGCGGCACCAGTATCGCCCCCAGCACCGCCCTCAAGAA
AAGCGACGAGCGTCGTTCCCCATGTCGTCCATGTCAAGCAGCGGCGAGTC
TTGCAGTAGATCGGTGCTATCGGCCCCCGCGCGCAGAAAGAGCAGCGACT
ACTACTACGACGACTACCACGCTCACAACAGGAGGCGCAGCGTCAGCTCG
GGGACGAGAAGGGAGGTGACTGTCGTGGACGAGCCGGGGATCGGAGCCGA
GGCCACATTGAGAGGGGGCGGTTGGATGGGTGCGGCAAACGGCCGCTTGT
AGGCTGAACATGTCTGTCGTTCGCGATCGTGTCCATGGCTGTCTGTAGAA
TAGCTCATTGTTACTTGTTTTGTTGTGGTCTTGCCCTTCGTGACGAAAGA
AGGGTCGTGTCCCTCCCGAGTCTCTGATAGTTTTTTTTTCCGTTCGTTTG
ATACCATGGTGTTGAACGTTCGATTTTTGTTCATTCGCGGAACGAATGTG
TGAGTGTTACTCTCTTTCTCGATGGTCTAGTCTCTCATTTGTTTGCTGTG
TGTTGTTTGCTCTTCGCGCATCGGATCCGGGATGTGCTCTAGTCTAATTG
ACGGCACGTGTAGTATGATGAAGCTTGTGCATTCATACGAGCATCCGATG
ACCTCGTGCGTGGAAGGCGCGGATAGAGACATCGAACCGACGCAACCGGC
GGGTCTACGGTGCTTGGCTTAGAAAAGTGGGAGCTGGAGCAGTCCGCCCG
ACTG back to topCoding sequence (CDS) from alignment at E_fasciculatus_S2_contig6778:5..2508- >mRNA_E_fasciculatus_S2_contig6778.14899.1 ID=mRNA_E_fasciculatus_S2_contig6778.14899.1|Name=mRNA_E_fasciculatus_S2_contig6778.14899.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=723bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6778:5..2508- (Ectocarpus fasciculatus EfasUO2)
TGGTTTCTATGGGTGGCAGCTTTCTGCGTGTTGGTGGCGATCTGCGGGCT
GTGCTCCTGCTACGTGGTGACCCCGGTTGTTCGAAGTTGCCGGGAGCGTT
TCGGCGTGAAACATGGGTGGAAACCAAAGGGCGTCGTCGTACGGCAGGAG
CAGCACCAGCGCCATGAGAAGCACCAGCAGCAGCAGCACCAGCTACAACA
ACAACAGCAACAACCGGATCGTGGTCGACCGCGAGGAACAGGAGAGAGGG
AAAGAGGCGATGCCCGAGACAGTAAGTCACACCACCAACGCTACCACCAC
TGGTACCTTGACGATCTCCTCAAGATTACTCCCGAAGATGAGGTTGAGTT
CGGAGTGCGCCATTCCCCGGCCTACACCGCGACGCCAACGCCAAGGGTGG
CCAGAACAGCTTCGGGCTTGGCGCCGCAGTCACGGCGGCACCAGTATCGC
CCCCAGCACCGCCCTCAAGAAAAGCGACGAGCGTCGTTCCCCATGTCGTC
CATGTCAAGCAGCGGCGAGTCTTGCAGTAGATCGGTGCTATCGGCCCCCG
CGCGCAGAAAGAGCAGCGACTACTACTACGACGACTACCACGCTCACAAC
AGGAGGCGCAGCGTCAGCTCGGGGACGAGAAGGGAGGTGACTGTCGTGGA
CGAGCCGGGGATCGGAGCCGAGGCCACATTGAGAGGGGGCGGTTGGATGG
GTGCGGCAAACGGCCGCTTGTAG back to top
|