mRNA_E_fasciculatus_S2_contig6770.14893.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig6770.14893.1
Unique NamemRNA_E_fasciculatus_S2_contig6770.14893.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig6770.14893.1 vs.
Match: FYVE-type (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSU7_ECTSI)

HSP 1 Score: 346 bits (887), Expect = 1.310e-102
Identity = 340/552 (61.59%), Postives = 352/552 (63.77%), Query Frame = 1 
Query:    1 DLIKHVSGLKEGKGSIKNEVFLALHNKGQAEAMERCTGVIHPVKIWHGRADQLVPYAATKWLERSLPSCTSTVIPGGTHALVYDKGSMEEVFTAAQKGVQEARSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----KDDPLNLRKMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVMGMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---SESAPPPIPENGELVGALDGSGGSGSGSSSPAGLLGEIGKQFSLALNGSFGHEGSDIGEASMPXXXXXXVSQPREAGATAEKGLQDTSSHSEKSGVGRMAEGLLKQLDRAVSSISVGDGSGXXXXXXXXXXXXXXXXXXXXXXXVASVGALGXXXXXXSRRPSGLVLPWSQQDMDQGRDGGGG--EEQATNLVADSSGDNRVGRAFTGAGGGSGTPHSNECGRDESMGPAERAFAAAFG 1629
            DLIKHVSGLKEGKGSIKNEVFLALHNKG  EAMERCTGVIHPVKIWHGR+DQLVPYAATKWLERSLPSCTS VIPGGTHALVYDKGSMEEVFTAAQKGVQEAR +                                         XXXXXXXX                                K+DPLNLRKMV                       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  GV+GM  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   SESAPPPIPENGELVG LD SGGSGS  SSPAGLLGEIGKQFSLALNGSFGHEGSD GEASMP XXXXXV++PR+AGATAEKGLQDTSSHSEK+G                                                                             DMDQGRDGG    E++ATNL AD+SGDNR GRAFTGAG G GTPH N+ GRDESMGPAERAFAAAFG
Sbjct:  389 DLIKHVSGLKEGKGSIKNEVFLALHNKGPEEAMERCTGVIHPVKIWHGRSDQLVPYAATKWLERSLPSCTSAVIPGGTHALVYDKGSMEEVFTAAQKGVQEARVSKEQWKRKSTARFTARRLGSQLSYVASNVFSPRDDTSPSAAAXXXXXXXXTAGMMSPRSTKKVDQATPSEVTAVQEGQAAGKKEDPLNLRKMVAKAISRNASGTPDSSAHSLASAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--GVVGMGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSESAPPPIPENGELVGTLDSSGGSGS--SSPAGLLGEIGKQFSLALNGSFGHEGSDTGEASMPPXXXXXVAKPRDAGATAEKGLQDTSSHSEKTG-----------------------------------------------------------------------------DMDQGRDGGXXXXEDEATNLDADASGDNRFGRAFTGAGAGGGTPHLNDGGRDESMGPAERAFAAAFG 859
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BLAST of mRNA_E_fasciculatus_S2_contig6770.14893.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G440_ECTSI)

HSP 1 Score: 289 bits (740), Expect = 1.620e-85
Identity = 207/252 (82.14%), Postives = 216/252 (85.71%), Query Frame = 1 
Query:  919 SESAPPPIPENGELVGALDGSGGSGSGSSSPAGLLGEIGKQFSLALNGSFGHEGSDIGEASMPXXXXXXVSQPREAGATAEKGLQDTSSHSEKSGVGRMAEGLLKQLDRAVSSISVGDGSGXXXXXXXXXXXXXXXXXXXXXXXVASVGALGXXXXXXSRRPSGLVLPWSQQDMDQGRDGGGGE--EQATNLVADSSGDNRVGRAFTGAGGGSGTPHSNECGRDESMGPAERAFAAAFGXXXXXXXXXAVWS 1668
            SESAPPPIPENGELVGALDGSGGSGS  SSPAGLLGEIGKQFSLALN SF  EGSD GEAS P      VS+PR+   TAEKGL+DTSSHSEK+GVGRMAEGLLKQ+DRAV SISVGDGSGXXXXXXXXXXXXXXXXXXXXXXXVASVGALG      SRRPSGLVLPWSQQDMDQGRDGG     ++ATNL AD+SGDNR GRAFTGAG G GTPH N+ G DESMGPAERAFAAAFGXXXXXXXXXAV S
Sbjct:  177 SESAPPPIPENGELVGALDGSGGSGS--SSPAGLLGEIGKQFSLALNRSFNLEGSDTGEASKPPPP---VSKPRDPRTTAEKGLEDTSSHSEKTGVGRMAEGLLKQVDRAVPSISVGDGSGXXXXXXXXXXXXXXXXXXXXXXXVASVGALGSGVGGGSRRPSGLVLPWSQQDMDQGRDGGXXXXXDEATNLDADASGDNRFGRAFTGAGAGGGTPHLNDGGHDESMGPAERAFAAAFGXXXXXXXXXAVCS 423
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6770.14893.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
FYVE-type1.310e-10261.59domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
Uncharacterized1.620e-8582.14protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig6770contigE_fasciculatus_S2_contig6770:112..4769 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score93.2
Seed ortholog evalue3.1e-17
Seed eggNOG ortholog2880.D7FSU7
Model size2120
KEGG koko:K12492
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryno signal peptide or anchor
Exons4
EggNOG free text desc.lipid binding
EggNOG OGsKOG1729@1,KOG1729@2759
Cds size126
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842334.0144248-UTR-E_fasciculatus_S2_contig6770:111..2571696842334.0144248-UTR-E_fasciculatus_S2_contig6770:111..257Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig6770 112..257 +
1696842334.036369-UTR-E_fasciculatus_S2_contig6770:1027..11901696842334.036369-UTR-E_fasciculatus_S2_contig6770:1027..1190Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig6770 1028..1190 +
1696842334.0503964-UTR-E_fasciculatus_S2_contig6770:1980..21661696842334.0503964-UTR-E_fasciculatus_S2_contig6770:1980..2166Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig6770 1981..2166 +
1696842334.0597012-UTR-E_fasciculatus_S2_contig6770:3144..46431696842334.0597012-UTR-E_fasciculatus_S2_contig6770:3144..4643Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig6770 3145..4643 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842334.0689814-CDS-E_fasciculatus_S2_contig6770:4643..47691696842334.0689814-CDS-E_fasciculatus_S2_contig6770:4643..4769Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6770 4644..4769 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig6770.14893.1prot_E_fasciculatus_S2_contig6770.14893.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig6770 4644..4769 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig6770.14893.1

>prot_E_fasciculatus_S2_contig6770.14893.1 ID=prot_E_fasciculatus_S2_contig6770.14893.1|Name=mRNA_E_fasciculatus_S2_contig6770.14893.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=42bp
MANWPAGKVEGNPAWEEWSSAKKLVCHLVTAGCLAVIVLTW*
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mRNA from alignment at E_fasciculatus_S2_contig6770:112..4769+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig6770.14893.1 ID=mRNA_E_fasciculatus_S2_contig6770.14893.1|Name=mRNA_E_fasciculatus_S2_contig6770.14893.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4658bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6770:112..4769+ (Ectocarpus fasciculatus EfasUO2)
GACCTGATCAAACACGTGTCCGGCCTCAAGGAAGGGAAAGGGTCCATCAA
GAACGAGGTGTTCCTCGCCCTGCACAACAAGGGACAGGCAGAGGCCATGG
AGCGATGTACGGGGGTCATCCACCCCGTCAAGATATGGCACGGAAGGTGC
GGTTGTTAATTATCGTCGTCTTCTCGTTGTTGTTGTTGTTGTTGTTGTTG
CTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGGCGGG
AGTGTTTTTGTTGTTGTTGTTGTTGTTGGTGGTGGTGGTGGGAGTGTTGT
GGTGCGAGGGTTGCTGGTGTCGTTGCTACCCCTCCGCGTCCATACTCCTT
TTTGTTGCTTTTTGTTGTCCACCAGCAAGCGCGTCACTCCGGATATGACC
ATATGACGATATGACCGTGCTTGGGCAGTACGGGAGCGCCCGAGCCGCTT
GATCTTCACGTACCGACCTTGCAGCAGACGGATTTGTTAATGGTTGCCTA
CAAGTCGCATACATCAATGTTAATGGTTGCCTACAAGTATGCATACATCA
ATGGTTGCCATCAACAATCCCTGATTGGGTAGGCGAGGCTCTGACGGAGG
GAGGCGTGCGCGTTCACACCTTTCGATGTCGAGGTTGTTGGTGGTGTGAG
ATGATGGCTGGAGTCTAAACCACACTGTTCGAGATGCTTGCGGACGCGCT
CTCTGGAGTACACGTTTTTTGTTCCGCTTGCATTCATGACGTCTAATCAT
TGGGGAGCCAGTTATGGCGGTCGATACTGCTGTTGGTGAAACAATGCTCC
CTGCGTGGCGCTGTCGGTGGTAGCGAAAGAAGCCCGAACGCACACAGACT
CAGGCACAGCAGCAGTTGGTTCATGCCGCCAAACTCTGCTTATCTATGCC
GACTCTCCCGTCACAGGGCGGACCAGCTGGTGCCGTATGCGGCGACGAAG
TGGCTTGAGCGCTCGCTACCGTCCTGCACGAGCACGGTCATCCCGGGGGG
TACCCACGCGCTCGTCTACGACAAGGGGAGCATGGAGGAGGTTTTCACGG
CCGCGCAGAAGGGAGTCCAGGAGGCCCGGGTAAGCAAGGAGCAGTGGAAG
CATTGGGTTGCAATTTTTGTGGGCATGGGGTGTTTTGAAGGGGTGTACCC
TTTCTTGGGTAGTTGGCGTGTGACCGTGGAAGACGTCCGTCATCAGTTAG
ACCGATTCGGATATTGGAAGGTACTGTTGTTCGATGTGTACAGTGTACCT
TAGGTAGTTGACCTGTCTGTGCCTAAGGAAGGCACCCACCCGCATCAGTT
GGACCGATTCGGATGTTAAAAGGTGCTGTTTGATGTACATCGTTGTTTTT
GAAAAGGGGTACCCTTTCTGGGGTAGTTGGCCTGTGATCACGGTAGGCGT
CCGTCGTCACTTGGACCGATTCGGCTGTTGGACGGTACACTTGGCAGAGC
CCGCACCCGTTTTTTTTCTATGAAAACAACCGCATAAACAATAGGACACG
TGCGAGACGGCCCATGTCCGATCGAGAGAGCGCTGGAAACGAACCGAACC
GGCACATAATACCTTACCTTCCTCTCGCGTATGATGTATTGTATTGCTGT
TGAGCCTGCTGAGGAGCGGTTGTTCCGGTTTTATCGTACTCGCTCATTTC
CAGCAATAACTTGCGTTTTGTTCCCAAAACTTTTTCAAAACCAGCCGAAT
ATTGCGTCGTTTTTGACCGTTCCGTTAGTGAGACCCATTGCGTTTTTCGT
GGCGATAGATTTATGGGGGGGGGGGGGACATGTAAGCTCCGCCACCCGCC
CCGGGCCCGGCACCGCTCCTAAGCTCTTACCTCTCCTCTTTCCGTGACCT
CGTTCCCCTGCCTGTCCAGTCTACCGCCCGTTTCACGGCCCGGCGTCTAG
GCAGCCAGCTGTCGTACGTGGCTTCGAACGTTTTCTCGCCGCGGGAGGAC
GCGTCCCCTACGGCGGCGGCGACGGCGGCGGCGACGGCTGCAGCGGCTGC
GGGCGCGACGGCGGGCATGATGAGCCCTCGCTCCACCAAGAAGAAGACGG
ACCAGGTACGGCCGGGAAAGAGATACCTCGCCCCTCCCCCCCGTTGTTTG
GTTTGTACAACCGGGACGTGGGCGACGTCTTGGTTGTACATAAATAACAG
AAAACAAAAAAGGGGCCTGTTTGTTCCATTGTTGTTTTCGTGAGGCGACA
CCCCCACCGCGTTTACAGCTCTCTCCTGGTTTACTTGACTCGGGCGGAAA
ACCTCGCGGTACGCTTATTGCGGAGCACAAGGCGATTCGGGAGCCACCGT
TTCTCCGCTCCGCGTTTCTGCTCTAGTGTCGGACCTACGTGTGCATCGTT
CGCGTGCGAATCTCTGCCGAGCCACATATATACGTCGAGTTCATGCCCCG
TGTCGTGGGGGTATACTCAGATGCAGCGATGCGACCGATCGTACTGTACA
TGCGGCCGCCGAGGCCTTGACCGAGGTTCGCCCCCGTATGATGGATAAGT
CTTGACGTCGTTTAGTCCGCGCTTTTACAAATCCCGGCACTAACTGGAAG
GACTGCAGCATATCCCTTTTGACTGCTGTGGTAATTCGTCGAACGGGTAG
TGTACGCCGGAGTATTTTCTCAACATCCCGGTCGTAGTCTTTCTGTGTTT
TTGTGTATATTTATGTTTGCAACTACCCGTTCGTGTGAATGTTGTAGCTT
TGGTTATGACGCGCGGGTCCTTGGAGCCCGCTAGATACGGTGACGATGCC
GAGTTCGCCACACGCCTCACGGGTGGAAGCCGCACGGCAGTCGCCACTCG
TGATGACGTCGATGTGCTTGCGCACCCGCAACGTACGCACGACACAACTC
TGCCATCGCTACAGTACGTGTGTAGCGATGCGCTCGGCGCTTGATGTCGA
CGGACCTGATTCGTGGTCAGGCATGGACTGCTGTGGGTATACTTGGGAAT
TTAGCGCACATGAGCGGCCACCAGAATACATGTGCACACCCCCTCATCTG
GTACACCGCCCCTCGTACATGATGTTGATGCAGGCGACGCCGAGCGAAGC
ATCGGCGGAGCAAGAAGGGCAAGCTGCTGGCAAGAAGGATGACCCGTTGA
ACCTCCGAAAAATGGTGGCGAAGGCCATCTCGAGGAACGCCAGCTCCACC
CCCGACTCGTCGGTACACTCGCTCGCGTCCGCAGCCAACAACAGCCGCCA
CAACGCGGGGACGAACGGCGGCAGCAGCGGGCATGGCAGCGGCAGCGGAC
ATGGCAACGGCAGCGGCAGCGGGCATGGCAGCGGACACGGCGTCATGGGA
ATGGGCAGCGGCCACGGAAGCAGTGGGCACAGCCTCAGCTGGCACAGCAA
CGGCGGGGGCGGGGGGGGCAGCGGCAGCGGCCACGGAACCGCGGGTCGGC
GCCTGTCCTCATCCAGCACCGGTAGCCGGCACGGCCCAGGTAGCAGCCGT
CATGGGTCGGAGTCGGCGCCGCCTCCTATCCCCGAAAACGGGGAGCTTGT
CGGTGCCCTGGATGGCTCCGGGGGGAGTGGGAGTGGCAGCAGCAGCCCCG
CGGGACTGCTCGGCGAAATCGGGAAGCAGTTCAGCCTTGCTCTCAACGGG
TCTTTCGGCCACGAGGGTAGCGATATCGGGGAGGCTTCGATGCCGCCGCC
GCCGCCGCCGCCGGTGTCACAGCCGAGAGAGGCGGGAGCCACGGCGGAGA
AAGGCCTTCAGGACACTTCGTCTCATTCGGAGAAGAGCGGGGTGGGTCGA
ATGGCAGAAGGGTTGTTGAAGCAGCTCGACCGAGCGGTGTCCAGCATATC
TGTCGGGGATGGCAGCGGCCACGGATCGGGGTGGGGCGGGAGCGTCAGCG
GCGCGGGCGGAAGCGCCCAAGGGAGCGCGCACGGTAGCGTTGCGAGCGTT
GGGGCGTTGGGCGGCGGCGGCGGCGGTGGCTCGCGGAGACCAAGTGGACT
CGTTTTACCCTGGTCTCAGCAGGACATGGATCAGGGGCGAGATGGCGGCG
GCGGGGAAGAACAGGCTACCAATCTCGTCGCCGACTCGAGTGGTGACAAC
CGCGTTGGGCGTGCCTTCACCGGTGCCGGCGGCGGCAGCGGCACGCCGCA
CTCCAACGAGTGCGGGCGCGACGAATCGATGGGGCCGGCGGAACGCGCGT
TTGCGGCCGCCTTTGGCGGCGGCGGCGGCGGCGGCGGGGCGGCGGCGGTG
TGGTCTGCAGCACTCCCCGCGTGACCTCGCACTCGAAGCTGTCGTTCGGC
ACGCCCGTGACGGAACGCGTTGTCTCCACTTCGACCAGCGCTTCCGTTTA
CTCCACGCCGAGTCGGGTCACGCCGCGTCGGGTCACTCCGAGCGCCTCCG
TCTACGGCACGCCTCTCAGGGGTTTCGCCTCGGAACCAACTGCCGGGCCC
AGCACCGGCGCCGGCGCCGGCGCCGGCGGTGCCGGCGGTAGCGGGCACAG
CTCCACAGGCCCCGTCCGCAAGAGCTCGAGCGCGATCGACGGCGTGGTGG
CGGTGGACAAGGCGGCTGGGTACGAGGCGGCGATGGCGAACTGGCCGGCG
GGGAAGGTGGAGGGGAACCCTGCATGGGAGGAATGGAGCTCGGCGAAGAA
GCTGGTGTGCCACCTTGTCACGGCAGGCTGTCTAGCGGTGATCGTGCTAA
CGTGGTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6770:112..4769+

>mRNA_E_fasciculatus_S2_contig6770.14893.1 ID=mRNA_E_fasciculatus_S2_contig6770.14893.1|Name=mRNA_E_fasciculatus_S2_contig6770.14893.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=126bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6770:112..4769+ (Ectocarpus fasciculatus EfasUO2)
ATGGCGAACTGGCCGGCGGGGAAGGTGGAGGGGAACCCTGCATGGGAGGA
ATGGAGCTCGGCGAAGAAGCTGGTGTGCCACCTTGTCACGGCAGGCTGTC
TAGCGGTGATCGTGCTAACGTGGTGA
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