mRNA_E_fasciculatus_S2_contig6757.14874.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig6757.14874.1
Unique NamemRNA_E_fasciculatus_S2_contig6757.14874.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig6757.14874.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7E9_ECTSI)

HSP 1 Score: 352 bits (904), Expect = 1.180e-112
Identity = 177/192 (92.19%), Postives = 184/192 (95.83%), Query Frame = 3 
Query:  948 MDERMRYGGRSDSTLEYGKTAQANFLTSKKHQYRKWANQRAEARNAESATSTMWRRLAPTMEAFFCLDSDTACDKPNAQQSKAQGVFKDAKKRKHKKLVQSMNPDYDRIPAGESVIWEDYASFWRDVVPPVQEDQRAKVEQQFPNLRRTISMTSSKKFESKLFRYGGGKITQRTASLVVDTIHEMLYVPRMK 1523
            +DERMRYGGRSDSTLEYGK AQANFLTSKKHQYRKWANQ AEARNA +ATSTMWRRLAPTMEAFF LDSDTACD+PNAQQSKAQGVFKDAKK+KHKKLVQSMNPDYDRIPAGESVIWEDY+SFWRDVVPPV EDQRA+VEQQFP+LRR ISM SSKKFESKLFRYG GKITQRTASLVVDTIHEMLYVPRMK
Sbjct:  336 LDERMRYGGRSDSTLEYGKGAQANFLTSKKHQYRKWANQPAEARNAANATSTMWRRLAPTMEAFFRLDSDTACDEPNAQQSKAQGVFKDAKKKKHKKLVQSMNPDYDRIPAGESVIWEDYSSFWRDVVPPVPEDQRAEVEQQFPSLRRMISMASSKKFESKLFRYGEGKITQRTASLVVDTIHEMLYVPRMK 527
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BLAST of mRNA_E_fasciculatus_S2_contig6757.14874.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU1_9PHAE)

HSP 1 Score: 206 bits (525), Expect = 1.660e-57
Identity = 152/257 (59.14%), Postives = 157/257 (61.09%), Query Frame = 1 
Query:    1 NVPAYPTSAKPGGFYNPQHHAQPYAIGNGTV*GSGRDPRTAGAMAPQAVLPGTSGVSSVXXXXXXXXXXXXXXXXXXRASGALPTARRTHDGQLVQHARSHAGWAQAQGCPRDGAPPPHSAPSPGPLTGAAASSSPVATSTDSGVPD----------------------------------QPAS-PRGTSYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGEPLVGSGDATGVEGAAGGA 666
            NVPAYP +A PGGFY+PQHHAQPYA  NGTV GSGRDPRTAGAMAP A LPG       XXXXXXXXXX        RAS ALPTA+RTHDGQLVQHARSHAGWAQAQGCPRDGAPPPHSAPSPGPLTGAAASS+PVATS DSGVP                                   QPAS PRG +                             XXXXXXXX        LGEPL GSGDA GVEGAAGGA
Sbjct:   33 NVPAYPKTATPGGFYHPQHHAQPYATANGTVWGSGRDPRTAGAMAPPAGLPGICXXXXXXXXXXXXXXXAWLGSQSGRASEALPTAKRTHDGQLVQHARSHAGWAQAQGCPRDGAPPPHSAPSPGPLTGAAASSTPVATSNDSGVPHHAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPASSPRGAA----AAGAPPTDLTGSLVDPPRSAFLPGPXXXXXXXXPATTDLAGLGEPLAGSGDAKGVEGAAGGA 285
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BLAST of mRNA_E_fasciculatus_S2_contig6757.14874.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZL1_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 1.170e-45
Identity = 83/90 (92.22%), Postives = 86/90 (95.56%), Query Frame = 3 
Query:  960 MRYGGRSDSTLEYGKTAQANFLTSKKHQYRKWANQRAEARNAESATSTMWRRLAPTMEAFFCLDSDTACDKPNAQQSKAQGVFKDAKKRK 1229
            MRYGGRSDSTLEYGK AQANFLTSKKHQYRKWANQ AEARNA +ATSTMWRRLAPTMEAFF LDSDTACD+PNAQQSKAQGVFKDAKK+K
Sbjct:    1 MRYGGRSDSTLEYGKGAQANFLTSKKHQYRKWANQPAEARNAANATSTMWRRLAPTMEAFFRLDSDTACDEPNAQQSKAQGVFKDAKKKK 90
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6757.14874.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized1.180e-11292.19protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7E9... [more]
Uncharacterized1.660e-5759.14protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.170e-4592.22protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig6757contigE_fasciculatus_S2_contig6757:719..5143 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1523
Hectar predicted targeting categorysignal peptide
Exons3
Cds size312
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842331.7999444-UTR-E_fasciculatus_S2_contig6757:718..10121696842331.7999444-UTR-E_fasciculatus_S2_contig6757:718..1012Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig6757 719..1012 -
1696842331.810819-UTR-E_fasciculatus_S2_contig6757:3222..33731696842331.810819-UTR-E_fasciculatus_S2_contig6757:3222..3373Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig6757 3223..3373 -
1696842331.820999-UTR-E_fasciculatus_S2_contig6757:4065..42001696842331.820999-UTR-E_fasciculatus_S2_contig6757:4065..4200Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig6757 4066..4200 -
1696842331.851651-UTR-E_fasciculatus_S2_contig6757:4512..51431696842331.851651-UTR-E_fasciculatus_S2_contig6757:4512..5143Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig6757 4513..5143 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842331.838888-CDS-E_fasciculatus_S2_contig6757:4200..45121696842331.838888-CDS-E_fasciculatus_S2_contig6757:4200..4512Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6757 4201..4512 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig6757.14874.1prot_E_fasciculatus_S2_contig6757.14874.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig6757 4201..4512 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig6757.14874.1

>prot_E_fasciculatus_S2_contig6757.14874.1 ID=prot_E_fasciculatus_S2_contig6757.14874.1|Name=mRNA_E_fasciculatus_S2_contig6757.14874.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=104bp
MRQELRAPPAVLQLLAAASNTAVAAAAGKENVPIPPKNGGQNYNGLYLSL
LLEALLDASKTRDGGKWRMKTTCQTNWGEQKAKADAVFEKWQEASLDERM
QPG*
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mRNA from alignment at E_fasciculatus_S2_contig6757:719..5143-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig6757.14874.1 ID=mRNA_E_fasciculatus_S2_contig6757.14874.1|Name=mRNA_E_fasciculatus_S2_contig6757.14874.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4425bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6757:719..5143- (Ectocarpus fasciculatus EfasUO2)
AACGTGCCTGCATACCCCACCTCGGCAAAACCTGGCGGATTTTACAATCC
GCAGCATCATGCGCAGCCCTACGCCATTGGCAACGGCACGGTATGAGGTT
CGGGCCGTGACCCACGGACTGCCGGAGCTATGGCTCCTCAGGCAGTTCTC
CCTGGCACAAGTGGGGTTTCCAGTGTTGTGAGCGCCGCAGCATCCGCCGC
TCAAGCTGCTTGGCAAGGAAGTCAATCGGGGCGTGCTTCTGGGGCCCTTC
CTACGGCGAGGCGCACGCACGACGGGCAGCTTGTTCAGCATGCCCGCAGC
CATGCAGGATGGGCCCAAGCTCAGGGTTGTCCCCGAGACGGGGCGCCCCC
TCCTCACTCAGCGCCTTCCCCCGGCCCTCTCACGGGCGCAGCAGCGAGTT
CCAGCCCTGTTGCAACCTCTACCGACAGCGGTGTGCCTGATCAACCAGCT
TCTCCCCGAGGCACTTCCTACGGGGCGGCCGCCGCCGGAGCGCTTCCAAC
GGACCTCACCGGCAGCTTGGTGGACCCCCCTCACTCGGCTTCTCTCCCAG
GCCCTCACTCCAGCGCGGCGATTGCAGGACCGGCTACAACCGACCTCACC
GGGTTAGGAGAGCCTCTGGTAGGATCGGGGGATGCGACAGGAGTTGAGGG
CGCCGCCGGCGGTGCTACAGCTGTTGGCCGCTGCTTCCAATACGGCGGTC
GCGGCAGCCGCCGGGAAGGAAAACGTGCCCATCCCGCCGAAAAATGGCGG
ACAGAACTATAACGGCCTGTACCTGAGTCTGCTGCTGGAGGCCCTCCTCG
ATGCGAGCAAGACCAGGGACGGTGGGAAGTGGAGGATGAAGACGACATGC
CAGACGAATTGGGGAGAGCAGAAAGCCAAAGCGGATGCCGTGTTCGAGAA
GTGGCAGGAGGCCAGCCTGGATGAACGCATGCAGCCTGGATGAACGCATG
GATGAACGCATGCGCTATGGGGGGAGATCCGATTCGACATTGGAGTATGG
GAAGACTGCACAAGCTAACTTCCTCACGAGCAAAAAGCACCAGTACCGGA
AGTGGGCGAACCAACGCGCGGAAGCACGGTAAGTGCGCGTGTCTATATTT
TTGGCATCGACGGCGGTGTGCATGAGATTGATATTAGCATTTTGTTCCTT
GTGCTCCACACAAATAGGCAAAGCGCGAAGCGTTTAACGCACACACAAGT
TGGGTACGCAAAAGGATGCGTACTGCTGCACATTCAAAATTTAAACATGT
AAACCATAATAATAACAGAACTACAACAAGCGGCCTGTGCGCAAGTATTG
CACGCCCGCGCGCCATGAACGATTGATTGCGTTTACTTATAGGCCTGGCT
TGCATGTTCCATGACGAGCTAGACGGGAAGCTGACGGTATTAGCATAGGG
ATACTTGCTCGGACTCCTCCGACCCGGGCAATAGTCAATCATCGTATAAA
TAACCCCGCAGCCAACGCCGCCGGTGTAGATGGATGGAGAGAGCGGGAGA
GAGAGGGGGGGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGATGACACGGTCGTTTAACAAGCAAATGCTGTGTTTGGTTGG
CGTTTTGGTTAGATGTCGAGCGTCTAACCAAAACGGAAACACGTGGACAG
GCACGTATTCCATCGATAACTTGGGTTTCAGTCTTCATTCGAAACCTACC
CCAGCGACGTTTTTGTTTGTGTCAAACGATCATCTAACATCGCCTTTTGT
AGCTGTTTCATTGTCGACAGGAACGCGGAGAGCGCCACCAGCACGATGTG
GCGTAGGCTCGCACCGACGATGGAGGCCTTCTTCTGCCTTGACTCCGACA
CGGCTTGCGACAAGCCCAACGCGCAGCAGTCGAAAGCTCAGGGGGTGTTC
AAGGACGCGAAGAAGAGAAAGGTGAATACAAGTGGATTCGAAACTCGTCT
AAAAAAAACTAGACTGCTTGGGCATTATCTTGGTGTACTTTCATTGAGCG
AGATCTGCTCTACGTGGATTGATAGAGAGAGGGTGGGGGGGGGGGGCACC
GCCATGGTAAAATTTTCGGGGTCAACGCAAGTCAGCGATAGGTTCTTCGC
TTTTCCCTACATCAGCACGCTGAATGTAATCACACATTTCTCGCTGAAAT
CTCAGCCTACCGATGCGAAAACAAGACCCCCGATCCGCGTGATCACGGCC
GCCGTTTGGTACCATCGTTCACTGTCTCTCGTATGTTTTTTGGCTCGAAT
GGTCATATGGTTCGAGGAACCGCAAGGGGCCTGTTCGGGCCTTGTTTGCG
CCTTGGGTCGATTCGGGAAGTCGGTTCCCCCGCCTGCATCTCTCCAGTAT
GTGCCTTTTTCTTTTTTCTGTCTTGTTTCGTGTTATTTTCGGCCTTTTCC
CTGTTTGTCCTCGCTCTTTTTCGTTTTCCTTTATTTTTCCTGGCTGTGTT
CCTTTATTTTGTTTGTGTTATCTTTTCTCTCTTTTTTCTGTGTCAGATGC
CCTTGTCTCTGCTTACGTTATCAAGTACCAAGATTGAACCAAGGGGTGTA
CCTCTTTATAACCTGCAGAGGGAGCGGAGGACAGGGCCAGTTTCTTTTTT
AGGGCACCCTTTCTAGGGTAAGTCCGCCTGTGACAACGGGAATCGACCGC
GTCAAGTGTTGGATCAGTACGGACATATGAAGGCACTGGGAAGAGAGACA
TCGGAACGGTAGTCAATGTGCAGACAATAAGACAACAACAGTGTTGTGTA
GAGCCAACCCGAATTCAAATTCCAACATCTTAAACCTCAGCGCCCGCCGG
AACAGTTGATGGAACGATGCTTTAGAGACTTCGCTAATGTTGCTTTAGAA
GTGTTGCAACAGTCCGAAGTACCACATGGCTCGGTCGTGGATGTGTTATG
CCTCGTCCTCATAGGAAAACGGCCGTGTGGGGGCTCCGCGTGATCGATGC
CCGTTCGTCTTACCCGTGAATAAAACTAAACTAAGAGTTCGGGGGTACTT
GCAACACGGGTTTCAACCGTGTGGGACCCGCCGATTCGCTTGTGGCGGAA
TGCCTGCATGCTTTCATTTCCGTTTGCTTTGTCAACCCTCCCTCACCGCC
ATCCATTCTCCGACCGGCGGGACTAGGTATGGATTGTCTTCACCCTGATC
CCTCCGGGCCTCCGGGACCTAACCTGACTAGTCTTGCCCGTGGTGAATGC
CATGTCCTGGTTTCTATCCGCATGCTGCCGTTTACTTCTGCCATTGTGAC
GCATTCCCTGGCGTATTTGTCCGCCCGACGCGGGCGTGCTCTAAACGATA
GGAGGAGGCGAAGGACAGGAAGGCGGCCAACGACAAGATTGGCGCTTTCG
GGAACGCCCTCGACAAGATGAAGGCTAACATGGCGGAGAACCAGCAGCCG
ATGAGGGAGGCGTTGGAGATCGCGAAGCGAGACGAGGCATGGAAGGATGC
ACGTGAGAAGAGGGCCATCGAGGACAGCAAGAAGATGGAGCAAGAACGCC
AAGCCGCTGAGAAGGAAAGGCGCGAGTTCCGCAAGTCCGGCGATGATTTC
CGCAAGTCTGGAGAATAAAGTCCTTCGACGTGCCCCCCTTTGTTGGCTAG
GCATCCATTCGAAATGCGTGTCTCCACGAACGGCGATGTGGTACGGGTTT
TGAGGTTCCGATCCATTTGTCCACGTTCCCTTGGAGCGGGCAAGGTAGGG
TTAAGATGAAACCGTTCCAAGCAGGACTCACCGTGGAGCCGTTCGCTCAG
GTTCCCGCGTCTATGTTGTCCACGAAGGATCGGTGAGTGACCAAGCAGCA
CACCACCGGTGCGAGAGTCTCATGCGCAGCACAGCACCGCAGTACGATCA
GCATAGCAGAATTGGTAGGTTAGGCGAAGTAAACTTGATAATGGTTGAGC
CTTCGACAAACTGGTTCGTTGCCTCGAAACAATTCCGAACCAAACGGTGG
GTGTCTGTATGTCAGCACACGCAGACGATGCTCTCGCAGTGAGTTGCACC
GAGTCCATTACCAGGTGTGGTAAAAGTTTAGATTGGTCTGTCGCTAACCA
AACGCCTCGTCCTCCCTACGTCCCTTGTCCCTGTTGTCGTCGCTCTGGGG
GGGGCGTCTGATCTTAGCTCTCTGCGCGCAGCACAAGAAGCTCGTCCAGA
GCATGAACCCGGACTACGATCGGATCCCTGCCGGGGAATCCGTCATCTGG
GAGGACTACGCTTCGTTCTGGCGCGACGTGGTGCCCCCCGTGCAAGAGGA
CCAGAGGGCTAAGGTGGAACAACAGTTCCCGAACCTGCGTCGTACGATAA
GCATGACCAGTTCGAAGAAATTCGAGAGTAAACTGTTCCGTTACGGCGGA
GGAAAAATCACGCAGCGCACTGCGTCCCTTGTGGTCGACACCATTCACGA
GATGTTGTACGTCCCTCGGATGAAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6757:719..5143-

>mRNA_E_fasciculatus_S2_contig6757.14874.1 ID=mRNA_E_fasciculatus_S2_contig6757.14874.1|Name=mRNA_E_fasciculatus_S2_contig6757.14874.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=312bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6757:719..5143- (Ectocarpus fasciculatus EfasUO2)
ATGCGACAGGAGTTGAGGGCGCCGCCGGCGGTGCTACAGCTGTTGGCCGC
TGCTTCCAATACGGCGGTCGCGGCAGCCGCCGGGAAGGAAAACGTGCCCA
TCCCGCCGAAAAATGGCGGACAGAACTATAACGGCCTGTACCTGAGTCTG
CTGCTGGAGGCCCTCCTCGATGCGAGCAAGACCAGGGACGGTGGGAAGTG
GAGGATGAAGACGACATGCCAGACGAATTGGGGAGAGCAGAAAGCCAAAG
CGGATGCCGTGTTCGAGAAGTGGCAGGAGGCCAGCCTGGATGAACGCATG
CAGCCTGGATGA
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