mRNA_E_fasciculatus_S2_contig6754.14870.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig6754.14870.1
Unique NamemRNA_E_fasciculatus_S2_contig6754.14870.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig6754.14870.1 vs.
Match: Protein (kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JGZ5_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 1.580e-45
Identity = 84/96 (87.50%), Postives = 88/96 (91.67%), Query Frame = 1 
Query:   46 MVQRKRWRVALGVATALVLPPCLGFRTAATTSSLGCRSNRDSRGHGRAGVRSRAVMTQLRANKRGKDDLMEKILPLIESVTTSREMVPSDLTRGYD 333
            MVQR+RWR ALGVA ALVLPPCLGFRT ATT+SLGCRSNRDS  HGRAGV SRAV+TQLRA KR K+DLMEKILPLIESVTTSREMVPSDLTRGYD
Sbjct:    1 MVQRRRWRAALGVAAALVLPPCLGFRTTATTASLGCRSNRDSSRHGRAGVHSRAVITQLRAKKRDKEDLMEKILPLIESVTTSREMVPSDLTRGYD 96
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6754.14870.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Protein1.580e-4587.50kinase domain-containing protein n=2 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig6754contigE_fasciculatus_S2_contig6754:3909..4243 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score82.0
Seed ortholog evalue1.9e-13
Seed eggNOG ortholog2880.D7FSZ9
Model size335
Hectar predicted targeting categorysignal peptide
Exons1
EggNOG free text desc.regulation of tocopherol cyclase activity
EggNOG OGsCOG0661@1,KOG1235@2759
Ec32 ortholog descriptionProtein kinase-like domain
Ec32 orthologEc-24_004250.1
Cds size333
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842331.5169053-CDS-E_fasciculatus_S2_contig6754:3908..42411696842331.5169053-CDS-E_fasciculatus_S2_contig6754:3908..4241Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6754 3909..4241 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig6754.14870.1prot_E_fasciculatus_S2_contig6754.14870.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig6754 3909..4241 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig6754.14870.1

>prot_E_fasciculatus_S2_contig6754.14870.1 ID=prot_E_fasciculatus_S2_contig6754.14870.1|Name=mRNA_E_fasciculatus_S2_contig6754.14870.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=111bp
VSTALPAAVYSSSGNMVQRKRWRVALGVATALVLPPCLGFRTAATTSSLG
CRSNRDSRGHGRAGVRSRAVMTQLRANKRGKDDLMEKILPLIESVTTSRE
MVPSDLTRGYD
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mRNA from alignment at E_fasciculatus_S2_contig6754:3909..4243+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig6754.14870.1 ID=mRNA_E_fasciculatus_S2_contig6754.14870.1|Name=mRNA_E_fasciculatus_S2_contig6754.14870.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=335bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6754:3909..4243+ (Ectocarpus fasciculatus EfasUO2)
GTGTCTACAGCCTTGCCTGCTGCTGTGTATAGCAGTAGTGGCAACATGGT
GCAGCGAAAACGATGGCGAGTGGCTCTGGGCGTGGCCACAGCGCTGGTGC
TCCCGCCCTGCCTCGGCTTCCGAACGGCGGCTACCACCTCGAGTCTCGGA
TGCCGCAGCAATCGCGACAGCAGAGGGCATGGTCGAGCTGGGGTACGTAG
CAGGGCCGTGATGACACAGCTGAGAGCGAATAAGCGAGGCAAGGACGACC
TGATGGAGAAAATTCTCCCTCTCATCGAGTCGGTCACGACCTCGAGGGAG
ATGGTGCCGTCGGATCTGACCCGTGGGTATGACGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6754:3909..4243+

>mRNA_E_fasciculatus_S2_contig6754.14870.1 ID=mRNA_E_fasciculatus_S2_contig6754.14870.1|Name=mRNA_E_fasciculatus_S2_contig6754.14870.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=333bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6754:3909..4243+ (Ectocarpus fasciculatus EfasUO2)
GTGTCTACAGCCTTGCCTGCTGCTGTGTATAGCAGTAGTGGCAACATGGT
GCAGCGAAAACGATGGCGAGTGGCTCTGGGCGTGGCCACAGCGCTGGTGC
TCCCGCCCTGCCTCGGCTTCCGAACGGCGGCTACCACCTCGAGTCTCGGA
TGCCGCAGCAATCGCGACAGCAGAGGGCATGGTCGAGCTGGGGTACGTAG
CAGGGCCGTGATGACACAGCTGAGAGCGAATAAGCGAGGCAAGGACGACC
TGATGGAGAAAATTCTCCCTCTCATCGAGTCGGTCACGACCTCGAGGGAG
ATGGTGCCGTCGGATCTGACCCGTGGGTATGAC
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