mRNA_E_fasciculatus_S2_contig6753.14869.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig6753.14869.1
Unique NamemRNA_E_fasciculatus_S2_contig6753.14869.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig6753.14869.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 2.220e-40
Identity = 64/88 (72.73%), Postives = 74/88 (84.09%), Query Frame = 1
Query:    1 MFVSCEYPLDIRDGRCDRGNNNEACGYDGGDCCECTCENEHDEKWRCIIFSCIDPNAACVNDDDVTVDMFENCPKF--IGDGWCDEEN 258
            MFV+CEYP+++ DG CD+GNNNEACGYDGGDCCECTCENE DE +RC+ FSCIDP+A CVNDDDVT+DM ENC     IG+GWCD  N
Sbjct:  415 MFVNCEYPVNVGDGWCDQGNNNEACGYDGGDCCECTCENERDEDYRCMEFSCIDPSAPCVNDDDVTIDMVENCGYVSGIGNGWCDRNN 502          
BLAST of mRNA_E_fasciculatus_S2_contig6753.14869.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR2_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 7.820e-35
Identity = 62/94 (65.96%), Postives = 70/94 (74.47%), Query Frame = 1
Query:    1 MFVSCEYPLDIRDGRCDRGNNNEACGYDGGDCCECTCENEH----DEKW--RCIIFSCIDPNAACVNDDDVTVDMFENCPKF--IGDGWCDEEN 258
            M  +C+YPL + DG CD+GNNNEACGYDGGDCCECTCE E     D+ W   C  FSCIDPNAACV+DDD+TVDMFENC     IG+GWCD  N
Sbjct:  451 MIENCDYPLSVGDGWCDKGNNNEACGYDGGDCCECTCEYESPYDWDDDWDYHCREFSCIDPNAACVSDDDITVDMFENCGYVSGIGNGWCDRNN 544          
BLAST of mRNA_E_fasciculatus_S2_contig6753.14869.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB04_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 1.130e-34
Identity = 62/94 (65.96%), Postives = 69/94 (73.40%), Query Frame = 1
Query:    1 MFVSCEYPLDIRDGRCDRGNNNEACGYDGGDCCECTCENEH----DEKW--RCIIFSCIDPNAACVNDDDVTVDMFENCPKF--IGDGWCDEEN 258
            MF +C+Y L + DG CD GNNNEACGYDGGDCCECTCE E     D+ W   C  FSCIDPNAACV+DDD+TVDMFENC     IG+GWCD  N
Sbjct:   89 MFENCDYALSVGDGWCDEGNNNEACGYDGGDCCECTCEYESPYDWDDDWDYHCREFSCIDPNAACVSDDDITVDMFENCGYVSGIGNGWCDRNN 182          
BLAST of mRNA_E_fasciculatus_S2_contig6753.14869.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F4_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 7.270e-32
Identity = 58/94 (61.70%), Postives = 68/94 (72.34%), Query Frame = 1
Query:    1 MFVSCEYPLDIRDGRCDRGNNNEACGYDGGDCCECTCENEH----DEKW--RCIIFSCIDPNAACVNDDDVTVDMFENCPKF--IGDGWCDEEN 258
            MF +CEYP+DI +G CD  NN EACGYDGGDCCECTCE E     D+ W   C+ F+CIDP+A CV+DDD+TVDM ENC     IG+GWCD  N
Sbjct:  189 MFENCEYPVDIGNGWCDEANNIEACGYDGGDCCECTCEYESPYDWDDDWDYHCMEFACIDPSAPCVDDDDITVDMVENCGYVSGIGNGWCDRNN 282          
BLAST of mRNA_E_fasciculatus_S2_contig6753.14869.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI87_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 9.640e-32
Identity = 52/83 (62.65%), Postives = 62/83 (74.70%), Query Frame = 1
Query:    1 MFVSCEYPLDIRDGRCDRGNNNEACGYDGGDCCECTCENEHDEKWRCIIFSCIDPNAACVNDDDVTVDMFENC--PKFIGDGW 243
            M  +CEYP  + DG C++ NNNE C YDGGDCC CTC+N+ D+ W C  F+CIDP AACVNDDD+TVDMF NC  P  IG+GW
Sbjct:  285 MIENCEYPWGVGDGYCNQQNNNELCAYDGGDCCSCTCQNDFDDDWACTTFACIDPEAACVNDDDITVDMFVNCEYPVDIGNGW 367          
BLAST of mRNA_E_fasciculatus_S2_contig6753.14869.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S4_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 9.470e-29
Identity = 52/83 (62.65%), Postives = 61/83 (73.49%), Query Frame = 1
Query:   19 YPLDIRDGRCDRGNNNEACGYDGGDCCECTCENEHDEKWRCIIFS-CIDPNAACVNDDDVTVDMFENCPKF--IGDGWCDEEN 258
            +P +  DG CD+ NNNE CGYDGGDCCECTC N  D+ + C   S CIDP+A CV+DDDVTVDM ENC     +G+GWCDEEN
Sbjct:   57 FPREFGDGWCDQENNNEICGYDGGDCCECTCVNAWDDDYSCAANSACIDPSAPCVDDDDVTVDMVENCGYVGSVGNGWCDEEN 139          
BLAST of mRNA_E_fasciculatus_S2_contig6753.14869.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSR3_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 1.620e-24
Identity = 47/87 (54.02%), Postives = 58/87 (66.67%), Query Frame = 1
Query:    1 MFVSCEYPLDIRDGRCDRGNNNEACGYDGGDCCECTCENEHDEKWRCIIFSCIDPNAACVNDDDVTVDMFENCP-KFIGDGWCDEEN 258
            MF  C    +  DG C+  NNNE CGYDGGDCCECTC  +   ++ C  F+CIDP A CV+DDDVT D  ENC  +++GDG+CD  N
Sbjct:   55 MFEDC---FNFGDGFCNDYNNNEQCGYDGGDCCECTCVVDWSAEFGCTEFACIDPTAPCVDDDDVTADALENCMMEYLGDGYCDTYN 138          
BLAST of mRNA_E_fasciculatus_S2_contig6753.14869.1 vs.
Match: LNR (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S3_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 2.550e-24
Identity = 44/63 (69.84%), Postives = 51/63 (80.95%), Query Frame = 1
Query:   76 GYDGGDCCECTCENEHDEKWRCIIFSCIDPNAACVNDDDVTVDMFENCPKF--IGDGWCDEEN 258
            GYDGGDCCECTCE + D+ ++C+ FSCIDPNA CVNDDD+TVDMF+NC     IGDGWCD  N
Sbjct:    9 GYDGGDCCECTCEGD-DDDYKCMQFSCIDPNAPCVNDDDITVDMFDNCGYVSGIGDGWCDSNN 70          
BLAST of mRNA_E_fasciculatus_S2_contig6753.14869.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 8.660e-24
Identity = 49/90 (54.44%), Postives = 63/90 (70.00%), Query Frame = 1
Query:   13 CEYPLDIRDGRCDRGNNNEACGYDGGDCCECTCENEHDEKWRCII-------FSCIDPNAACVNDDDVTVDMFENCPKF-IGDGWCDEEN 258
            C++  D+ DG CD+ NNNE CGYDGGDCCECTCE   D+ W   +       F+CIDP+A CVNDDD+TVD+ E+C    +GDG+CD +N
Sbjct:  104 CDF-WDLGDGWCDQVNNNELCGYDGGDCCECTCEVPTDDDWDNDLYVACGEGFACIDPSAPCVNDDDITVDVDESCDAVGMGDGYCDMDN 192          
BLAST of mRNA_E_fasciculatus_S2_contig6753.14869.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJK5_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 2.360e-23
Identity = 47/87 (54.02%), Postives = 58/87 (66.67%), Query Frame = 1
Query:    1 MFVSCEYPLDIRDGRCDRGNNNEACGYDGGDCCECTCENEHDEKWRCIIFSCIDPNAACVNDDDVTVDMFENCP-KFIGDGWCDEEN 258
            MF  C    +  DG C+  NNNE CGYDGGDCCECTC  +   ++ C  F+CIDP A CV+DDDVT D  ENC  +++GDG+CD  N
Sbjct:  204 MFEDC---FNFGDGFCNDYNNNEQCGYDGGDCCECTCVVDWSAEFGCTEFACIDPTAPCVDDDDVTADALENCMIEYLGDGYCDTYN 287          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6753.14869.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized2.220e-4072.73protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized7.820e-3565.96protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.130e-3465.96protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized7.270e-3261.70protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized9.640e-3262.65protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized9.470e-2962.65protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.620e-2454.02protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
LNR2.550e-2469.84domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Uncharacterized8.660e-2454.44protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.360e-2354.02protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig6753contigE_fasciculatus_S2_contig6753:1536..3007 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score70.1
Seed ortholog evalue5.7e-10
Seed eggNOG ortholog2880.D7G5Y7
Model size258
Hectar predicted targeting categoryother localisation
Exons3
EggNOG OGs2BFIX@1,2S176@2759
Cds size258
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842331.4039958-CDS-E_fasciculatus_S2_contig6753:1535..16791696842331.4039958-CDS-E_fasciculatus_S2_contig6753:1535..1679Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6753 1536..1679 -
1696842331.414146-CDS-E_fasciculatus_S2_contig6753:2176..22141696842331.414146-CDS-E_fasciculatus_S2_contig6753:2176..2214Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6753 2177..2214 -
1696842331.4263241-CDS-E_fasciculatus_S2_contig6753:2931..30071696842331.4263241-CDS-E_fasciculatus_S2_contig6753:2931..3007Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6753 2932..3007 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig6753.14869.1prot_E_fasciculatus_S2_contig6753.14869.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig6753 1536..3007 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig6753.14869.1

>prot_E_fasciculatus_S2_contig6753.14869.1 ID=prot_E_fasciculatus_S2_contig6753.14869.1|Name=mRNA_E_fasciculatus_S2_contig6753.14869.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=86bp
MFVSCEYPLDIRDGRCDRGNNNEACGYDGGDCCECTCENEHDEKWRCIIF
SCIDPNAACVNDDDVTVDMFENCPKFIGDGWCDEEN
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mRNA from alignment at E_fasciculatus_S2_contig6753:1536..3007-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig6753.14869.1 ID=mRNA_E_fasciculatus_S2_contig6753.14869.1|Name=mRNA_E_fasciculatus_S2_contig6753.14869.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1472bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6753:1536..3007- (Ectocarpus fasciculatus EfasUO2)
ATGTTCGTCAGCTGCGAGTACCCGTTGGACATAAGAGACGGCCGGTGCGA CAGAGGAAACAACAACGAGGCGTGCGGTAGGTTCCTGCCCTACCACATGT GTGGATGGCAACTTCAGTGCAACAGGCACCGAAACACACATCAACATAAC GCAGAATAGCGTACGTCTTGCTCGCGACAAGCAATCTCCACAAACGCCTT CCTTATGCCCGGGAGTCCTGCTTTGCCAGATATTCGCCCAGTTAGGAACC TAACCTTTTTACAAGGAGGGGCGTTCACAACAAGACGGGTCTCGTCTAAA GTTCGGTTTGTGTAGCAGTGACTTCCGTCGTCGACACAAGCACCAGCGCC GCAGATGCACGCACACCGTACGTGACACCAGATATCACTCCCCCTGGACC GACGTTTTAGCTCGAGTTCTCCACAACGAAGATAGCGCGTAATGATCAAA CGGTATACGGTCGTTTGTCAAGCTCTCGACGAGTTTGTTCTTACGCAGCC ATGTTTGGTCCAACCCCGCCACCTCGACATCATTACTCTTTCTGCTTTGG CGGAATCGAGGTTAGCATATATGTGTGAAAGCCGCTACCACGATAGCGTG AGGAGACCAACCGCAAACCTGCCTTCGTTGCAACTAATCCGAGGGCTCAA TGTTTGCCAGGCTTAGTGCTAACGCTCGACACACTGCTACGTCCCCTACG TGCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGT CGTCGTCGTCGTCGTCGTCGTCCTTGCTGATCCGATTCACCAGGCTACGA TGGAGGCGACTGCTGCGAGTGCACGTGCGAGGTATAGAACGCCAAGCCCA CGGGTCCTCGTGAATGACTTGCAGCACATGGGACCCTCACACGTCTTCTC TTCGATCATCTTCTCTTCTGCAGCCCTCACAACCCATCCTGCCAATCTTT TCCAATTGCGGCATGGCTATGGTCTTCACCGTGAGCGGCTTACCGTCTTC GTGTCTAGTGGTTTGCGAAAGCACATGCGCTGCGCCACAAACTTGGAATC CGAATGGGTTGCTCTCGTGTACTATTAGGCTCTTCTCTTTGTCTGCAGCC ACTCCTCACGTGTTCGTGAGTGACCCCATCTGCTATGTTTGTGGACGTGC AAGGAGTATACGCTTGAAGGTTTGGTTTCGATTGGCGTTGGGTCAAATCT GGATTTCAACACCCGGTCCGAAATCATCTGTTCGACATGTTGGCCAACAT CTCCGTCCTGAAGACTGGGTTGCTGAGTCCCTCGTGTTCGGTGCTCGTTT TGTCTACTTGTTCTCACTCCCGTTTCAGAATGAACACGACGAAAAATGGC GCTGCATAATATTTTCTTGCATCGACCCCAATGCGGCCTGTGTAAACGAT GACGACGTTACGGTCGACATGTTCGAGAACTGTCCCAAATTCATTGGCGA TGGCTGGTGCGATGAGGAAAAC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6753:1536..3007-

>mRNA_E_fasciculatus_S2_contig6753.14869.1 ID=mRNA_E_fasciculatus_S2_contig6753.14869.1|Name=mRNA_E_fasciculatus_S2_contig6753.14869.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=258bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6753:1536..3007- (Ectocarpus fasciculatus EfasUO2)
ATGTTCGTCAGCTGCGAGTACCCGTTGGACATAAGAGACGGCCGGTGCGA
CAGAGGAAACAACAACGAGGCGTGCGGCTACGATGGAGGCGACTGCTGCG
AGTGCACGTGCGAGAATGAACACGACGAAAAATGGCGCTGCATAATATTT
TCTTGCATCGACCCCAATGCGGCCTGTGTAAACGATGACGACGTTACGGT
CGACATGTTCGAGAACTGTCCCAAATTCATTGGCGATGGCTGGTGCGATG
AGGAAAAC
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