mRNA_E_fasciculatus_S2_contig6742.14863.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig6742.14863.1
Unique NamemRNA_E_fasciculatus_S2_contig6742.14863.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig6742.14863.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L695_9PHAE)

HSP 1 Score: 549 bits (1415), Expect = 2.070e-187
Identity = 282/294 (95.92%), Postives = 284/294 (96.60%), Query Frame = 1
Query:    1 PSTHNTQDGGQAAWKEGPYWMTLHKLWRRMAERDYRTASKAVYVLHRLARGTTAESWGYFRSTLQEMRRDEDKGTKSRYFSRRVISNVDDDGRPFSEWLDAYAEFVLLRLQSFSPELGELAAIDAETPHEKASRSLEKAAKLIEAALACEIGPDLDNDVTCDGLKLVIEDLCEVWSLFQQKLEIRLQQRFTGGGFSSAELRRTLSFLEFYLEQLSAAQGLVQESHRLLALYSHAVPKGLGDDLATEMLQEQVAWIQEELTEKAKASVGKSVASGGDASPAPSPAAAKKRRIGGA 882
            P   N +DGGQAAWKEGPYWMTLHKLWRRMAERDYRTASKAVYVLHRLARGTTAESWGYFRSTLQEMRRDEDKGTKSRYFSRRVISNVDDDGRPFSEWLDAYAEFVLLRLQSFSPELGELAAIDAETPHEKASRSLEKAAKLIEAALACEIGPDLDNDVTCDGLKLVIEDLCEVWSLFQQKLEIRLQQRFTG GFSS ELRRTLSFLEFYLEQLSAAQGLVQESHRLLALY HAVPKGLGDDLATEMLQEQVAWIQEELTEKAKA VGKSV SGGDASP+PSPAA KKRRIGGA
Sbjct:  370 PVYMNPKDGGQAAWKEGPYWMTLHKLWRRMAERDYRTASKAVYVLHRLARGTTAESWGYFRSTLQEMRRDEDKGTKSRYFSRRVISNVDDDGRPFSEWLDAYAEFVLLRLQSFSPELGELAAIDAETPHEKASRSLEKAAKLIEAALACEIGPDLDNDVTCDGLKLVIEDLCEVWSLFQQKLEIRLQQRFTGAGFSSGELRRTLSFLEFYLEQLSAAQGLVQESHRLLALYGHAVPKGLGDDLATEMLQEQVAWIQEELTEKAKAFVGKSVTSGGDASPSPSPAATKKRRIGGA 663          
BLAST of mRNA_E_fasciculatus_S2_contig6742.14863.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGM3_ECTSI)

HSP 1 Score: 505 bits (1300), Expect = 1.030e-171
Identity = 254/262 (96.95%), Postives = 257/262 (98.09%), Query Frame = 1
Query:    1 PSTHNTQDGGQAAWKEGPYWMTLHKLWRRMAERDYRTASKAVYVLHRLARGTTAESWGYFRSTLQEMRRDEDKGTKSRYFSRRVISNVDDDGRPFSEWLDAYAEFVLLRLQSFSPELGELAAIDAETPHEKASRSLEKAAKLIEAALACEIGPDLDNDVTCDGLKLVIEDLCEVWSLFQQKLEIRLQQRFTGGGFSSAELRRTLSFLEFYLEQLSAAQGLVQESHRLLALYSHAVPKGLGDDLATEMLQEQVAWIQEELTEK 786
            P   N +DGGQAAWKEGPYWMTLHKLWRRMAERDYRTASKAVYVLHRLARGTTAESWGYFRSTLQEMRRDEDKGTKSRYFSRRVISNVDDDGRPFSEWLDAYAEFVLLRLQSFSPELGELAAIDAETPHEKASRSLEKAAKLIEAALACEIGPDLDNDVTCDGLKLVIEDLCEVWSLFQQKLEIRLQQRFTGGGFSS ELRRTLSFLEFYLEQLSAAQGLVQESHRLLALYSHAVPKGLGDDLATEMLQEQVAWIQEELT++
Sbjct:  335 PVYMNPKDGGQAAWKEGPYWMTLHKLWRRMAERDYRTASKAVYVLHRLARGTTAESWGYFRSTLQEMRRDEDKGTKSRYFSRRVISNVDDDGRPFSEWLDAYAEFVLLRLQSFSPELGELAAIDAETPHEKASRSLEKAAKLIEAALACEIGPDLDNDVTCDGLKLVIEDLCEVWSLFQQKLEIRLQQRFTGGGFSSGELRRTLSFLEFYLEQLSAAQGLVQESHRLLALYSHAVPKGLGDDLATEMLQEQVAWIQEELTDE 596          
BLAST of mRNA_E_fasciculatus_S2_contig6742.14863.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SQZ5_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 7.330e-17
Identity = 53/174 (30.46%), Postives = 97/174 (55.75%), Query Frame = 1
Query:   31 QAAWKEGPYWMTLHKLWRRMAERDYRTASKAVYVLHRLARGTTAESWGYFRSTLQEMRRDED-KGTKSRYFSRRVISNVDDDGRPFSEWLDAYAEFVLLRLQSFSPELGELAAIDAETPHEKASRSLEKAAKLIEAALACEIGP-DLDNDVTCDGLKLVIEDLCEVWSLFQQKL 546
            Q++  + PY MTLHK+W +M E+D+RT SK+ Y+LH + R ++ ES   F   ++EM R  + K    +YF  ++I  +D  G  + +++ AYA++VL R ++F  +  +   +++++   +    L+KA + +   L   +   D  N +T   LKL+  DL +++  F   L
Sbjct:  127 QSSMDDDPYHMTLHKIWTKMCEKDWRTVSKSFYLLHCIVRDSSVESCEEFTDAIKEMSRTRNPKKPDHKYFDLKLIKQLDSFGNSYKDFVVAYAQYVLYRSKNFHAKFNQFDELNSKSKETEVVALLKKAQQSLNLGLKVSLTKKDQYNAITGQILKLLAIDLRDLYQQFTSTL 300          
BLAST of mRNA_E_fasciculatus_S2_contig6742.14863.1 vs.
Match: Predicted (protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G2T5_PHATC)

HSP 1 Score: 92.8 bits (229), Expect = 1.330e-16
Identity = 68/243 (27.98%), Postives = 110/243 (45.27%), Query Frame = 1
Query:   55 YWMTLHKLWRRMAERDYRTASKAVYVLHRLARGTTAESWGYFRSTLQEMRRDEDKGTKSRYFSRRVI--SNVDDDGRPFSEWLDAYAEFVLLRLQSFS---------PELGELAAIDAETPHEKASRSLEKAAKLIEAALACEIGPDLDNDVTCDGLKLVIEDLCEVWSLFQQKLEIRLQQRFTGGGFSSAELRRTLSFLEFYLEQL-SAAQGLVQESHRLLALYSHAVPKGLGDDLATEMLQ 747
            Y   L KLW +MAE+D+RT  K++Y+LHR +     E     ++ L+E+RR  D   K +YF+ + +     + +   F  ++  YA +VLLR Q F          P+L +     A T     S  LE AA L++A +AC+    L  D  C+   +  E +          + I L +          +      + EFY E+L    + +V+++   L  Y   +P  +G  L+ EMLQ
Sbjct:  294 YDAVLRKLWGKMAEKDWRTTIKSLYILHRFSADGAPEHAAALKARLRELRRTRDPKRKDKYFNSKQLLAGESNPENIKFRAFMSRYAHYVLLRAQCFGGLFDEISQEPKLDKKKPPKAITTTSLRSEHLEAAAMLLKAGVACQ----LKEDEACENTAIAAERVASDLIGLTTSVAIALNRALKSSDLKGGDPELLKKWCEFYSEELLPQTRAMVKKTSSKLDAYGLFLPSRMGASLSPEMLQ 532          
BLAST of mRNA_E_fasciculatus_S2_contig6742.14863.1 vs.
Match: ENTH (domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DHA3_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 6.090e-16
Identity = 70/230 (30.43%), Postives = 114/230 (49.57%), Query Frame = 1
Query:   52 PYWMTLHKLWRRMAERDYRTASKAVYVLHRLARGTTAESWGYFRSTLQEMRRDEDKGTKSRYFSRRVISNVDD-DGRPFS---------EWLDAYAEFVLLRLQSFSPELGELAAI-DAETPHEKASRSLEKAAKLIEAALACEIGP---DLDNDVTCDGLKLVIEDLCEVWSLFQQKLEIRLQQRFTG-GGFSSAELRRTLS-FLEFYLEQLSAAQGLVQESHRLLALY 693
            PY +TL KLW +MAERD+RT +KA+Y+ H L R    +    ++    +M R+  K T+SRYF    IS VD  DG             +++  Y+++VL R ++F+ +  E+  I   E   +     L KA K++ + L C +G    D D++VT    +LV  D+ ++  LF +KL   +  +     G   AE+ + L  F   Y       Q  + ++ +LL +Y
Sbjct:  295 PYRVTLRKLWAKMAERDWRTVAKALYLFHVLLRECEPDDVRIYKKVCAKMSREGCKKTRSRYFDAGAISAVDVMDGAGVGGAGACLDRRDFIARYSKYVLQRAKTFTSKFEEMKVIGQREIEAKDLVGQLGKAEKVLSSGLECALGEAEEDADSEVTLMCAELVARDVYDLSRLFHEKLRWAIDNQAAAFEGADRAEVAKILERFQASYARLYPQVQQFLTQTAQLLGVY 524          
BLAST of mRNA_E_fasciculatus_S2_contig6742.14863.1 vs.
Match: Hypothetical (protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VB79_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 3.490e-15
Identity = 69/250 (27.60%), Postives = 117/250 (46.80%), Query Frame = 1
Query:   55 YWMTLHKLWRRMAERDYRTASKAVYVLHRLARGTTAESWGYFRSTLQEMRRDEDKGTKSRYFSRRVISNVD--DDGRPFSEWLDAYAEFVLLRLQSFSPELGELAAIDAETPHEKASRS----------------LEKAAKLIEAALACEIGPDLDNDVTCDGLKLVIEDLCEVWSLFQQKLEIRLQQRFTGGGFSSAELRRTLSFLEFYLEQL-SAAQGLVQESHRLLALYSHAVPKGLGDDLATEMLQ 747
            Y   L KLW +MAE+D+RT  KA+Y+LHR +     +     ++ L+E+RR  D   K +YF+ + +   D   + +PF  ++  YA +VLLR Q F     E+    +  P  K   +                LE +  L++A  AC +    + + T   L+ V  DL  + +     L   L+ R + G    A ++R   + EFY E+L    + +V+++   L  Y   +P  +G  +A E+L+
Sbjct:  326 YDAVLRKLWNKMAEKDWRTTIKALYILHRFSSDGGPDHQAALKARLRELRRTRDPKRKEKYFNSKQLLEGDATPENQPFRAFMARYAHYVLLRAQCFGGMFTEIKENPSAPPSSKKPSAAAAQKPITSTSLRPEHLEASQLLLKAGCACALKDGEECESTALALERVASDLIGLNTAVAIALNRALRGRESKGPVDQALIKR---WCEFYSEELLPKTKKMVKKTSAKLDAYGLFLPSRMGASVAPELLK 572          
BLAST of mRNA_E_fasciculatus_S2_contig6742.14863.1 vs.
Match: ENTH (domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZTH1_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 5.640e-15
Identity = 70/246 (28.46%), Postives = 119/246 (48.37%), Query Frame = 1
Query:   55 YWMTLHKLWRRMAERDYRTASKAVYVLHRLARGTTAESWGYFRSTLQEMRRDEDKGTKSRYFSRRVI--SNVDDDGRPFSEWLDAYAEFVLLRLQSFSPELGELAAIDA-ETPHEKASRS-----------LEKAAKLIEAALACEIGPDLDNDVTCDGLKLVIEDLCEVWSLFQQKLEIRLQQRFTGGGFSSAELRRTLSFLEFYLEQL-SAAQGLVQESHRLLALYSHAVPKGLGDDLATEMLQ 747
            Y   L KLW +MAE+D+RT  KA+Y+LHR +   + E     ++ ++E+RR  D   K ++FS +++   +  ++   +  +L  YA +VLLR Q F     E+AA  A +T  +KA+             L+ A  L+E  LAC +    +N+ T   ++ V  DL  + +     L   L+     G    A+      + EFY E L    + +V+++   L  Y   +P  +G  L+ ++LQ
Sbjct:  268 YDAVLRKLWAKMAEKDWRTTIKALYILHRFSADGSPEHAPALKARVRELRRTRDPKRKGKFFSSKLLLAGDTSEETAKYRAFLGRYAHYVLLRAQCFGGMFDEIAAPSAKDTKKKKAAPKPITSTSLKADHLDAAKLLLETGLACVLKKGEENENTALAVERVASDLLGLTTAVTGALTRALKDDDLKG----ADPVLIKKWCEFYSESLLPQTRSMVKKTAPTLDAYGLFLPSRMGPTLSQDLLQ 509          
BLAST of mRNA_E_fasciculatus_S2_contig6742.14863.1 vs.
Match: ENTH (domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FBW9_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.020e-13
Identity = 65/245 (26.53%), Postives = 117/245 (47.76%), Query Frame = 1
Query:   55 YWMTLHKLWRRMAERDYRTASKAVYVLHRLARGTTAESWGYFRSTLQEMRRDEDKGTKSRYFSRRVISNVDD--DGRPFSEWLDAYAEFVLLRLQSFSPELGELAAIDAETPHEKA-----------SRSLEKAAKLIEAALACEIGPDLDNDVTCDGLKLVIEDLCEVWSLFQQKLEIRLQQRFTGGGFSSAELRRTLSFLEFYLEQL-SAAQGLVQESHRLLALYSHAVPKGLGDDLATEMLQ 747
            Y   L KLW +MAE+D+RT  KA+Y+LHR +   + +     ++ ++E+RR  D   K ++FS +++   DD  +   F  ++  YA +VLLR Q F     E+AA  +    +KA           S  L+ A  L++  +AC +     N+ T   ++ V  DL  + +     L   L+      G     +++   + EFY E L    + +V+++   L  +   +P  +G  ++ ++LQ
Sbjct:   78 YDAVLRKLWAKMAEKDWRTTIKALYILHRFSADGSPDHAPALKARVRELRRTRDPKRKGKFFSSKLLQAGDDKPESAKFRAFMGRYAHYVLLRAQCFGGMFDEIAAPPSADKKKKAAPKPITSTSLRSDHLDAAKLLLKTGVACVLKNGEANENTALAVERVASDLLGLTTAVATALNRALKNDADLKGADPVLIKQ---WCEFYSEVLLPQTRSMVKQTTPKLDAFGLFLPSRMGASVSPDLLQ 319          
BLAST of mRNA_E_fasciculatus_S2_contig6742.14863.1 vs.
Match: ENTH (domain-containing protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB97_VAULI)

HSP 1 Score: 82.0 bits (201), Expect = 1.930e-13
Identity = 62/233 (26.61%), Postives = 112/233 (48.07%), Query Frame = 1
Query:   43 KEGPYWMTLHKLWRRMAERDYRTASKAVYVLHRLARGTTAESWGYFRSTLQEMRRDEDKGTKSRYFSRRVISNVDDDGRPFSEWLDAYAEFVLLRLQSFSPELGELAAIDAETPHEKASRS-----LEKAAKLIEAALACE-IGPDLDNDVTCDGLKLVIEDLCEVWSLFQQKLEIRLQQRFTGGGFSSAELRRTLSFLEFYLEQLSAAQGLVQESHRLLALYSH---AVPKG 714
            +EGPY M L KLWR+M   D+RT++K++Y+LHRLA  T+AES+ +F  T  E+R       +   F  + I     +     +++   A+FV  R++  SP++  L         EK S       ++   K IE  + C  +  D+ +++  D   L+  D  ++W L++  +E ++         S  EL +     EF+ + +     L ++ +++   Y     ++PKG
Sbjct:  133 EEGPYHMLLLKLWRQMKSSDWRTSTKSLYILHRLAIETSAESYTHFHRTFLELR----ASVQPPPFEPKQIKRSPQNNEKM-KFIKKQAKFVFNRIEQISPDINSL--FSEMCAMEKVSTETILAWMKNLQKAIEVGIECSGLLNDIGSEIEADSSLLIANDTVKLWELYEALME-KISSAEKTENNSEFELLK-----EFHGKNVKKVISLAKKGNKIAKFYGFERISIPKG 352          
BLAST of mRNA_E_fasciculatus_S2_contig6742.14863.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BXP2_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 3.530e-13
Identity = 61/214 (28.50%), Postives = 102/214 (47.66%), Query Frame = 1
Query:   34 AAWKEGPYWMTLHKLWRRMAERDYRTASKAVYVLHRLARGTTAESWGYFRSTLQEMRRDEDKGTKSRYFSRRVISNVDDDGR-PF----SEWLDAYAEFVLLRLQSFSPELGELAAIDAETPHEKASRSLEKAAKLIEAALACEIGPDL-DNDVTCDGLKLVIEDLC-------EVWSLFQQKLEIRLQQRFT----GGGFSSAELRRTLSFLE 624
            +A+    Y+M LHKLW RMAE D+RT +K++++ HR+A          F      M+R   K TK+ Y++   +  V DDG  PF    +++L AYA F   R  SFS    EL ++D      K    L++A +++E ++  +    L  ++V      L + D          +W +F ++L   L  + T    GG  + +++  T   +E
Sbjct:   14 SAYNSDYYFMMLHKLWSRMAEHDWRTVAKSLFIFHRMAVSVDPSLHLEFVQRFNRMQRLTHKKTKATYYNLETLLTVRDDGAAPFGPGTAKFLRAYAVFCFERFLSFSGRFEELDSLDEGADLRKLLGQLKQARRVLEKSVQLKTSKSLLRHEVVAQCSALAMADCFVAERGRRSLWEVFGERLGALLSAQRTEAERGGRLAPSDIEATSRLVE 227          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6742.14863.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
Uncharacterized2.070e-18795.92protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.030e-17196.95protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Hypothetical7.330e-1730.46protein (Fragment) n=1 Tax=Chromulina nebulosa Tax... [more]
Predicted1.330e-1627.98protein n=2 Tax=Phaeodactylum tricornutum TaxID=28... [more]
ENTH6.090e-1630.43domain-containing protein n=3 Tax=Monodopsidaceae ... [more]
Hypothetical3.490e-1527.60protein n=1 Tax=Ditylum brightwellii TaxID=49249 R... [more]
ENTH5.640e-1528.46domain-containing protein n=1 Tax=Pseudo-nitzschia... [more]
ENTH1.020e-1326.53domain-containing protein (Fragment) n=1 Tax=Fragi... [more]
ENTH1.930e-1326.61domain-containing protein n=1 Tax=Vaucheria litore... [more]
Hypothetical3.530e-1328.50protein (Fragment) n=1 Tax=Florenciella parvula Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig6742contigE_fasciculatus_S2_contig6742:128..4730 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score474.9
Seed ortholog evalue3.4e-131
Seed eggNOG ortholog2880.D8LGM3
Model size1266
Hectar predicted targeting categoryother localisation
Exons6
EggNOG OGs2ECB5@1,2SI7J@2759
Ec32 ortholog descriptionENTH/VHS
Ec32 orthologEc-10_002760.1
Cds size1140
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig6742.14863.1prot_E_fasciculatus_S2_contig6742.14863.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig6742 188..4664 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842330.7209063-UTR-E_fasciculatus_S2_contig6742:127..1871696842330.7209063-UTR-E_fasciculatus_S2_contig6742:127..187Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig6742 128..187 +
1696842330.8053937-UTR-E_fasciculatus_S2_contig6742:4664..47301696842330.8053937-UTR-E_fasciculatus_S2_contig6742:4664..4730Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig6742 4665..4730 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842330.7327664-CDS-E_fasciculatus_S2_contig6742:187..3841696842330.7327664-CDS-E_fasciculatus_S2_contig6742:187..384Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6742 188..384 +
1696842330.7447412-CDS-E_fasciculatus_S2_contig6742:1052..12091696842330.7447412-CDS-E_fasciculatus_S2_contig6742:1052..1209Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6742 1053..1209 +
1696842330.7573307-CDS-E_fasciculatus_S2_contig6742:2224..23051696842330.7573307-CDS-E_fasciculatus_S2_contig6742:2224..2305Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6742 2225..2305 +
1696842330.7671049-CDS-E_fasciculatus_S2_contig6742:2931..30331696842330.7671049-CDS-E_fasciculatus_S2_contig6742:2931..3033Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6742 2932..3033 +
1696842330.7830362-CDS-E_fasciculatus_S2_contig6742:3383..35651696842330.7830362-CDS-E_fasciculatus_S2_contig6742:3383..3565Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6742 3384..3565 +
1696842330.7953346-CDS-E_fasciculatus_S2_contig6742:4243..46641696842330.7953346-CDS-E_fasciculatus_S2_contig6742:4243..4664Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6742 4244..4664 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig6742.14863.1

>prot_E_fasciculatus_S2_contig6742.14863.1 ID=prot_E_fasciculatus_S2_contig6742.14863.1|Name=mRNA_E_fasciculatus_S2_contig6742.14863.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=380bp
MTLHKLWRRMAERDYRTASKAVYVLHRLARGTTAESWGYFRSTLQEMRRD
EDKGTKSRYFSRRVISNVDDDGRPFSEWLDAYAEFVLLRLQSFSPELGEL
AAIDAETPHEKASRSLEKAAKLIEAALACEIGPDLDNDVTCDGLKLVIED
LCEVWSLFQQKLEIRLQQRFTGGGFSSAELRRTLSFLEFYLEQLSAAQGL
VQESHRLLALYSHAVPKGLGDDLATEMLQEQVAWIQEELTEKAKASVGKS
VASGGDASPAPSPAAAKKRRIGGAPTATARKPPAAASKAAAAAPAAVAAP
TAASKSPAASGPKRVASKKPAAGGSGAGGSKKRVGGGSGDKKAEGAAPRS
GSSKTATVAKTSRSRKKKGSSSSSARREL*
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mRNA from alignment at E_fasciculatus_S2_contig6742:128..4730+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig6742.14863.1 ID=mRNA_E_fasciculatus_S2_contig6742.14863.1|Name=mRNA_E_fasciculatus_S2_contig6742.14863.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4603bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6742:128..4730+ (Ectocarpus fasciculatus EfasUO2)
CCCTCAACACACAACACGCAGGACGGCGGCCAGGCCGCGTGGAAGGAAGG CCCCTACTGGATGACCCTGCACAAGCTCTGGAGGAGGATGGCCGAGAGGG ACTACCGCACCGCCTCCAAGGCCGTCTACGTGCTGCACCGCCTCGCCAGG GGTACCACCGCAGAGAGCTGGGGCTACTTCCGGTCGACGCTGCAGGAGAT GCGCCGCGACGAGGACAAGGGCACCAAGAGCCGTTACTTCAGCCGCAGAG TCATCAGGTGCGTTTTGTGTTGGAGGCGGCGGTTGTCGTCGCGGGTAGTG GTGTTTTTGGTCCTCCTGCGTTCTGTTTTAGATGAAGACTGCATCAAGAG CACTACTTCAGCCGCAGAGTCGCCAGGTGCGTTTTGTGTTGGAGGTGGCG GTTGTCGTCGCGGGTTGTGGTGTTTCTAGTTCTCCTGCGTTCTGTTTTGG ATGAAGACTGCACCAAGAGCCGCTACTTCAGCCGCAGAGTCGTCAGGTGC GTTTCTTTGTGTTAGTCGTTGGGGCGGTGTCATCGTGGGTCGTGGGTTTT GGTCTCCGTCTGTTCTGTCTAAATGACGACTGGACCAAGAGCCTCGTGTG CGTGCGCGAATATTTTTTTGTCGGCTGCCAGCTCCGCGTGACACGTATCG ATGTACGCCGGCGCCGCTTCGTCCCGTCGGACACGCGAGCGCGCACGGCG TGTGGCCATGGTGGGCAAACGAATGGCATGCGTCGCACGAGAAGGTCGTT GTACATGCGCCATACATACCCCGTACCACACTCTTGACCACTGGAAGAAG CCGCCGACTCATCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCAC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCTACCACCACCACCATCACC ACCATCACCCCCCCCCCCCTCTCAGCAACGTAGATGATGACGGGCGGCCC TTCTCGGAGTGGCTGGACGCCTACGCGGAGTTCGTGCTGCTGCGGCTGCA GTCGTTCTCGCCTGAGCTGGGCGAGCTCGCCGCCATCGATGCGGAGACGC CACACGAGAAGGCTTCCCGCTCTTTGGAGAAGGTGTGAGGCAGCGGTGGG GGGGGGGGGGGTGTACTCATAGTCGTGCATGCCGTAGTCGTTAGACCATA GACCTCGCATCCCTACAAAGCCGGGACGGATCATTGCCGGGTTCTCACCG GACCAGGCTCGTCGCTTGTTTCAGACCTCGATCGCCTGACCTTTTGAGCT GCGCAGCCCTTTCGAGAGACGCGGCACATCAATTTGCCTTCGTGGTCTGT GTATGTGATAATGGAAGCACATCCAATACTGCTGTGCCTGTTGAAGTGTA TCACACGTTTTCATGGGAGGGTTTTGCTCATTTGTGGAGTGTCTTTTGTC TTTGGACCTCGCCTCAAACGAAGAGGGTATTCGCGCGGTTCCGTGCGCCA TTCCTTGCGGCTGTTTAGGTTGCGCATGTGGGAATCGCTCTTGACGTGAA ACGCCAAAATGTACCTGGAACCGTGGTCAGATGTAGCGGGGGTGCGGGGT GTGGAAAGGGGCTTCCCCAACCGCAGTGAAGCACTACACCAACCTATTCT CTGTACATATTGATTCCCTGATGGCTCAGCAGGGGTTCGAGACAGTATTC ACCTTCAAGCACACCCAACCTGAAGGGTATTTCTTGTGTTGGGGTAGGAC GGTACGGTGTTGTTGGGGTTTTCCTGCATCCGTGTGGCTACGCTCCTGCC GTGCCGTCTTCTTTTTGGTTCCCTATAAGAGGAAGAATGTTAGGCGGGAA TCAGAGTCTGTACGGGGCTACAGCAGTACCGGCACCCTGTTGTTTTCGTG GCTTAGAGGTAGGGGTAGGAGTTGTGGCAGGAGAAGCAGAACAGGATTTT CTGCTCCTGCTGCTATTATGCTATCCCCACTTCTAGCCATACCCCATTCG GAACGAACCCTTTTCTCCTGCTGCTACCCCGACTACGTTTCGTACCTACT GTTGCTGCTGTGTGAACTTTTGCCCTCTTGGCACGGCGATTGATTGATAT CCCGCACTTCCCGTGCGGATCTCTCTCTATCTCGTTTGGTGCAACAGGCG GCTAAGCTGATCGAAGCGGCCCTTGCGTGCGAGATCGGCCCGGACCTAGA CAACGACGTAACCTGCGACGGCCTCAAGGTATCTACCATGTCTTTGTCTG CCGTGTGGCTCCTGTGCCTTGCTGTCATGATTTCTTAGCGGAGATGGTTG GAGAAATGTTAAAGGGCTGTGTAAAATTTTGAAAGAGCACATATGCACGC GTTGCGAAAATAATCCAAAGTTTGAACGGGCAGACCATGTGCTTCCGAAC AGTAGCAAATGAAAGGGGTGATTTTCTTTGGTTTGCAGTCTGCCTTTCGC GACACGACGAATAGTCTAGCTGTTCTTGTTGTGGACGATGCCTGAAAGTG GGCTGTGGATTGTTTTCACTGGATCTCTCGCGACCGCTGGGTGAGCAAGG GGAAGGGGGTTCAGAATCATCTCTACGCCACTACCACCACTATGATCGTC ATCGATAGCAACACGAACCATCTCTCTAAGTGCGGAGTATCAAGGCGCAG ACGACGGCCTCCCTCCAGCACGGCAAACTTCCACCAAACTTCACTTGACG GGTCTGCACGGCTGGTCCTGCACTGCGTCTGCTGTCTGCAAATCTCTGTC GCATGTGTTGTACTACCTACCCTCCCCCATCCCGCAACCATTCCCCGCCT GTGTCCGACCCCACGCCCCCCGAAACGATTCACTGATCGTGCCGTATTTT TCAGCTGGTGATCGAGGACTTGTGCGAGGTGTGGTCGCTGTTCCAGCAGA AGCTAGAGATACGCCTGCAGCAGCGGTTTACGGGGGGCGGCTTCTCGAGC GCAGAGGTGGGGGTGTGCGTTGTGCGGCGCGCGGGTGTTCGTAACGTAAC GTAACGTAACGTGGCGGTGGTGGTATTAATAGTTGTTGGGTGTTGTTGTT GTTGTTGTTGTTGATGTTTGGTGTGCTCTTGGAATTTTCTCGGAGCGTTT TTGTCCTTCAAATCCGGCAGAATTCACCGGTGCAGTAGCGGAGTGTTTTC CTCCCCCTGCACACCTCTCCCCGGCCTCCGTTTGTACCGCCCTTGTATCA TGTCCTTCCACGGTCCCCGGGCACAACGCAACGAAACGTCGCGGTTTTTT CACTCTCCGACATCTAATAAATACTTGGTGTCGGTCACTTGTACGTGCCC GTGCAGCTTCGACGCACGCTGAGCTTCTTGGAGTTCTACCTCGAGCAGCT CTCTGCGGCGCAGGGCCTAGTGCAGGAGTCCCACCGCCTCCTGGCCTTGT ACAGCCACGCGGTGCCGAAGGGGCTTGGGGACGACCTCGCGACGGAGATG CTGCAGGAGCAGGTCGCGTGGATACAGGAGGAACTCACGTGAGTTGTTTT GTGATGACTGCTCTTCTTGGTATGACTGCTGTTGCCGGTGCTGTTGTTTG TGGAGGGGATGGGGGGGGGGGGGGGTCTGTTTTCGCCCGAACGAGTTTAG GAGCACGCTTGCTGCACACGGCCGCTTGCTACGGCATCGAATCCACCCTA TACGCCAATCGGGTGCCAATCTCGCCCGCACGTAGGCACTCCCCGTATCC CTTGATGTTGGGTACAGCAGTGATAAGTAGCGAGGTAGCCATGGCTTTCG TGGTGGATGCAGGCGGAGTAGTGGTTCTACAAGGCCGGTTTATGTCGCGC GACACAGATGGAAACATTTACGCTGTCTCCTACTACTTGGAATAGTGTTG GGTGCCCGGTATAATGCGGATCAAACCCTCGGCACTACTATGCTGCCTTA CACTGGGTATGTACTACTGTAGCGACAGACTACTGTGAGAACAAGGACAC GGCGTAGGAGTCAGACACGGCAAACGAAATGCGTCGGTCAAAGCCGCGGC AGAAATGTTGGGTAACCCAGACGTTGTGGAAAGTGCTTGTGTCGGGGAGT AGGAACGCCCCGTTTATCAAGGAGAGAGAAGGGCTGTCAGCGATCAAAAG GCCCATAATAGGCACGCAACAATGCCTCCCCCCAACGCGTTTGTCTCTCC CGCCGCCTCGATACAGCGAGAAGGCCAAGGCCTCCGTGGGCAAGTCCGTC GCCTCTGGCGGCGACGCGTCCCCGGCGCCTTCTCCAGCAGCGGCCAAGAA GAGGAGGATCGGCGGAGCACCGACCGCCACGGCACGGAAGCCTCCGGCGG CGGCGTCAAAGGCGGCGGCGGCGGCACCCGCGGCGGTAGCAGCACCTACG GCGGCATCGAAGTCCCCGGCGGCGTCTGGTCCGAAGAGAGTGGCGAGCAA GAAGCCGGCAGCCGGTGGTAGCGGCGCAGGCGGCAGCAAGAAGAGGGTAG GCGGCGGGAGCGGGGACAAGAAGGCCGAGGGAGCGGCACCGCGAAGCGGG TCGTCGAAGACTGCTACCGTTGCCAAGACGAGCAGGAGCAGGAAGAAGAA GGGCTCGTCGTCTAGTAGTGCGAGACGAGAGCTTTAAGGAGTAAGCGTGT CTGGAGACCAGCACGGGGTCGGTACGTGGGATCGGTGGAGACCCGGGGCG GGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6742:128..4730+

>mRNA_E_fasciculatus_S2_contig6742.14863.1 ID=mRNA_E_fasciculatus_S2_contig6742.14863.1|Name=mRNA_E_fasciculatus_S2_contig6742.14863.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1140bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6742:128..4730+ (Ectocarpus fasciculatus EfasUO2)
ATGACCCTGCACAAGCTCTGGAGGAGGATGGCCGAGAGGGACTACCGCAC
CGCCTCCAAGGCCGTCTACGTGCTGCACCGCCTCGCCAGGGGTACCACCG
CAGAGAGCTGGGGCTACTTCCGGTCGACGCTGCAGGAGATGCGCCGCGAC
GAGGACAAGGGCACCAAGAGCCGTTACTTCAGCCGCAGAGTCATCAGCAA
CGTAGATGATGACGGGCGGCCCTTCTCGGAGTGGCTGGACGCCTACGCGG
AGTTCGTGCTGCTGCGGCTGCAGTCGTTCTCGCCTGAGCTGGGCGAGCTC
GCCGCCATCGATGCGGAGACGCCACACGAGAAGGCTTCCCGCTCTTTGGA
GAAGGCGGCTAAGCTGATCGAAGCGGCCCTTGCGTGCGAGATCGGCCCGG
ACCTAGACAACGACGTAACCTGCGACGGCCTCAAGCTGGTGATCGAGGAC
TTGTGCGAGGTGTGGTCGCTGTTCCAGCAGAAGCTAGAGATACGCCTGCA
GCAGCGGTTTACGGGGGGCGGCTTCTCGAGCGCAGAGCTTCGACGCACGC
TGAGCTTCTTGGAGTTCTACCTCGAGCAGCTCTCTGCGGCGCAGGGCCTA
GTGCAGGAGTCCCACCGCCTCCTGGCCTTGTACAGCCACGCGGTGCCGAA
GGGGCTTGGGGACGACCTCGCGACGGAGATGCTGCAGGAGCAGGTCGCGT
GGATACAGGAGGAACTCACCGAGAAGGCCAAGGCCTCCGTGGGCAAGTCC
GTCGCCTCTGGCGGCGACGCGTCCCCGGCGCCTTCTCCAGCAGCGGCCAA
GAAGAGGAGGATCGGCGGAGCACCGACCGCCACGGCACGGAAGCCTCCGG
CGGCGGCGTCAAAGGCGGCGGCGGCGGCACCCGCGGCGGTAGCAGCACCT
ACGGCGGCATCGAAGTCCCCGGCGGCGTCTGGTCCGAAGAGAGTGGCGAG
CAAGAAGCCGGCAGCCGGTGGTAGCGGCGCAGGCGGCAGCAAGAAGAGGG
TAGGCGGCGGGAGCGGGGACAAGAAGGCCGAGGGAGCGGCACCGCGAAGC
GGGTCGTCGAAGACTGCTACCGTTGCCAAGACGAGCAGGAGCAGGAAGAA
GAAGGGCTCGTCGTCTAGTAGTGCGAGACGAGAGCTTTAA
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