mRNA_E_fasciculatus_S2_contig674.14859.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig674.14859.1
Unique NamemRNA_E_fasciculatus_S2_contig674.14859.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig674.14859.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC9_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 3.340e-28
Identity = 84/107 (78.50%), Postives = 85/107 (79.44%), Query Frame = 2 
Query:  167 IQQQTQLRRKVGEALSKTRRMSPPVEPRPPPVEIRAQPERARVGSSKPKQRRXXXXXXXXXXXXXXXXXVMPKPSLRTRRGAAERCTEEMLSRRPVARSVVYWRAFE 487
            +QQQ QLR K  E L KTR MSPPVEPRPPPVEIRAQPERARVGSSKPK        XXXXXXXXXXXXVMPKPS  TRRG AE CTEE LSRRP AR VVYWRAFE
Sbjct:   95 MQQQAQLRPKAVEVLWKTR-MSPPVEPRPPPVEIRAQPERARVGSSKPKX-------XXXXXXXXXXXXVMPKPSQPTRRGRAEGCTEERLSRRPAARRVVYWRAFE 193
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BLAST of mRNA_E_fasciculatus_S2_contig674.14859.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNQ9_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 7.720e-16
Identity = 41/53 (77.36%), Postives = 43/53 (81.13%), Query Frame = 2 
Query:  374 VMPKPSLRTRRGAAERCTEEMLSRRPVARSVVYWRAFEGGARTAGSSMQIDRW 532
            VMPKPS RTRRG AE CTEE LSRRP ARSVVY RAFEGGA T G S++ID W
Sbjct:   81 VMPKPSQRTRRGRAEGCTEERLSRRPAARSVVYRRAFEGGAGTGGGSVKIDLW 133
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BLAST of mRNA_E_fasciculatus_S2_contig674.14859.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEJ2_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.770e-14
Identity = 45/77 (58.44%), Postives = 48/77 (62.34%), Query Frame = 2 
Query:  293 VGSSKPKQRRXXXXXXXXXXXXXXXXXVMPKPSLRTRRGAAERCTEEMLSRRPVARSVVYWRAFEGGARTAGSSMQI 523
            VG SKPKQR                  VMPKP+ RTRRG A  CTEE LSRRP ARSVVY RAFEGGA T G S++I
Sbjct:  137 VGESKPKQRMPPPVEPRPPPESTRAEPVMPKPNQRTRRGRAGGCTEERLSRRPAARSVVYRRAFEGGAGTGGGSVEI 213
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig674.14859.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0N7_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 3.890e-14
Identity = 38/50 (76.00%), Postives = 41/50 (82.00%), Query Frame = 2 
Query:  377 MPKPSLRTRRGAAERCTEEMLSRRPVARSVVYWRAFEGGARTAGSSMQID 526
            MPKPS RTRRG AE CTEE LSRRP ARSVVY RAFEGGA T G S++I+
Sbjct:    1 MPKPSQRTRRGRAEGCTEERLSRRPAARSVVYRRAFEGGAGTGGGSVEIE 50
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig674.14859.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3E3_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 3.980e-11
Identity = 41/52 (78.85%), Postives = 43/52 (82.69%), Query Frame = 2 
Query:  128 AEXXRFLQTTLQKIQQQTQLRRKVGEALSKTRRMSPPVEPRPPPVEIRAQPE 283
            AE  RFL+ TLQK+QQQ   R KV EAL KTRRMSPPVEPRPPPVEIRAQPE
Sbjct:   68 AEQERFLRMTLQKMQQQQTQRPKVVEALWKTRRMSPPVEPRPPPVEIRAQPE 119
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BLAST of mRNA_E_fasciculatus_S2_contig674.14859.1 vs.
Match: Reverse (transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF72_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 3.290e-8
Identity = 33/51 (64.71%), Postives = 37/51 (72.55%), Query Frame = 2 
Query:  374 VMPKPSLRTRRGAAERCTEEMLSRRPVARSVVYWRAFEGGARTAGSSMQID 526
            V P+P    RRG AE CTEE L RRP ARSVVY RAFEGGA T G S++I+
Sbjct:   19 VKPRP----RRGRAEGCTEERLPRRPAARSVVYQRAFEGGAGTVGGSVEIE 65
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig674.14859.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP41_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.720e-7
Identity = 35/63 (55.56%), Postives = 40/63 (63.49%), Query Frame = 2 
Query:  374 VMPKPSLRTRRGAAERCTEEMLSRRPVARSVVYWRAFEGGARTAGSSMQIDR---WGAPA*IG 553
            VMPKP    RRG A    EE   RRPV RSV+Y RAFEGGART G S++I+     G PA +G
Sbjct:   19 VMPKP----RRGRAAGSMEERHPRRPVVRSVLYMRAFEGGARTGGGSVEIEEEATGGDPAYVG 77
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig674.14859.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIQ0_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 1.520e-6
Identity = 30/33 (90.91%), Postives = 31/33 (93.94%), Query Frame = 2 
Query:  224 RMSPPVEPRPPPVEIRAQPERARVGSSKPKQRR 322
            RM PPVEPRPPPV+IRAQ ERARVGSSKPKQRR
Sbjct:  121 RMGPPVEPRPPPVDIRAQLERARVGSSKPKQRR 153
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig674.14859.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
Uncharacterized3.340e-2878.50protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized7.720e-1677.36protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.770e-1458.44protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.890e-1476.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.980e-1178.85protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Reverse3.290e-864.71transcriptase domain-containing protein n=1 Tax=Ec... [more]
Uncharacterized1.720e-755.56protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.520e-690.91protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig674contigE_fasciculatus_S2_contig674:26437..27223 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size559
Hectar predicted targeting categoryother localisation
Exons3
Cds size486
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842330.0468664-UTR-E_fasciculatus_S2_contig674:26436..265071696842330.0468664-UTR-E_fasciculatus_S2_contig674:26436..26507Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig674 26437..26507 -
1696842330.0570097-UTR-E_fasciculatus_S2_contig674:26626..266281696842330.0570097-UTR-E_fasciculatus_S2_contig674:26626..26628Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig674 26627..26628 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842330.0697546-CDS-E_fasciculatus_S2_contig674:26628..269301696842330.0697546-CDS-E_fasciculatus_S2_contig674:26628..26930Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig674 26629..26930 -
1696842330.081161-CDS-E_fasciculatus_S2_contig674:27039..272231696842330.081161-CDS-E_fasciculatus_S2_contig674:27039..27223Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig674 27040..27223 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig674.14859.1prot_E_fasciculatus_S2_contig674.14859.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig674 26629..27223 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig674.14859.1

>prot_E_fasciculatus_S2_contig674.14859.1 ID=prot_E_fasciculatus_S2_contig674.14859.1|Name=mRNA_E_fasciculatus_S2_contig674.14859.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=162bp
APAVPVEGRAVPATTPAALSTTKRCSVTPAASSGETAAARAAGGARAFSA
DDAAENTAADTAATEGGGGSVENEEDEPAGGASAAAGGDSGAAGEGEGRV
VQAQAKEAAAGGASAATGEDEGGAGHAQAEPADQEGGGGALHGGDALAEA
RGQKRGLLEGF*
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mRNA from alignment at E_fasciculatus_S2_contig674:26437..27223-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig674.14859.1 ID=mRNA_E_fasciculatus_S2_contig674.14859.1|Name=mRNA_E_fasciculatus_S2_contig674.14859.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=787bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig674:26437..27223- (Ectocarpus fasciculatus EfasUO2)
GCGCCAGCAGTGCCAGTAGAGGGAAGAGCGGTACCAGCTACAACACCAGC
TGCTCTTTCTACAACAAAGAGGTGCAGCGTCACACCAGCAGCGTCGTCTG
GAGAAACAGCTGCAGCAAGAGCAGCAGGCGGAGCAAGAGCGTTTTCTGCA
GACGACGCTGCAGAAAATACAGCAGCAGACACAGGTGCGTACGTGATTGG
CAAACCCCATTTGGAGAGAGATATGTGGTTTCTCCCTTTGATACCCACAG
TTCGTTGACACACTCCCCAAATCTTTCTTCCTCCCTCTTCAAGCTGCGAC
GGAAGGTGGGGGAGGCTCTGTCGAAAACGAGGAGGATGAGCCCGCCGGTG
GAGCCTCGGCCGCCGCCGGTGGAGATTCGGGCGCAGCCGGAGAGGGCGAG
GGTAGGGTCGTCCAAGCCCAAGCAAAGGAGGCCGCCGCCGGTGGAGCCTC
GGCCGCCACCGGAGAGGACGAGGGCGGAGCCGGTCATGCCCAAGCCGAGC
CTGCGGACCAGGAGGGGGGCGGCGGAGCGCTGCACGGAGGAGATGCTCTC
GCGGAGGCCCGTGGCCAGAAGCGTGGTCTACTGGAGGGCTTTTGAAGGTG
TGTTTGGTGTGTACTGAGGTGATCTGGGCTCGCTCCCTGCTCCCGGATAA
GCGGTCGGAAACGCAGTCTACCAGCGGACTTGTCATGGTGTATTTTTTGG
CGACATCTCATTGCAGGTGGGGCCAGGACCGCAGGAAGTTCTATGCAAAT
TGATCGATGGGGCGCCCCAGCCTAAATTGGAGGGGGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig674:26437..27223-

>mRNA_E_fasciculatus_S2_contig674.14859.1 ID=mRNA_E_fasciculatus_S2_contig674.14859.1|Name=mRNA_E_fasciculatus_S2_contig674.14859.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=486bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig674:26437..27223- (Ectocarpus fasciculatus EfasUO2)
GCGCCAGCAGTGCCAGTAGAGGGAAGAGCGGTACCAGCTACAACACCAGC
TGCTCTTTCTACAACAAAGAGGTGCAGCGTCACACCAGCAGCGTCGTCTG
GAGAAACAGCTGCAGCAAGAGCAGCAGGCGGAGCAAGAGCGTTTTCTGCA
GACGACGCTGCAGAAAATACAGCAGCAGACACAGCTGCGACGGAAGGTGG
GGGAGGCTCTGTCGAAAACGAGGAGGATGAGCCCGCCGGTGGAGCCTCGG
CCGCCGCCGGTGGAGATTCGGGCGCAGCCGGAGAGGGCGAGGGTAGGGTC
GTCCAAGCCCAAGCAAAGGAGGCCGCCGCCGGTGGAGCCTCGGCCGCCAC
CGGAGAGGACGAGGGCGGAGCCGGTCATGCCCAAGCCGAGCCTGCGGACC
AGGAGGGGGGCGGCGGAGCGCTGCACGGAGGAGATGCTCTCGCGGAGGCC
CGTGGCCAGAAGCGTGGTCTACTGGAGGGCTTTTGA
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