mRNA_E_fasciculatus_S2_contig674.14857.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig674.14857.1
Unique NamemRNA_E_fasciculatus_S2_contig674.14857.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig674.14857.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ25_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 3.920e-16
Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:    1 MLPLLKRRAAKPRVLLAALSRYNEKEDGPFLGYLPDKNA 117
            MLPLLK RAAKPRVLLAA+SRYN K+DGPFLGYLP+KNA
Sbjct:    1 MLPLLKLRAAKPRVLLAAMSRYNNKQDGPFLGYLPEKNA 39
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BLAST of mRNA_E_fasciculatus_S2_contig674.14857.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 7.810e-15
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 1 
Query:    1 MLPLLKRRAAKPRVLLAALSRYNEKEDGPFLGYLPDKNA 117
            MLPLLKRRAAKPRVLLAA+SRYNEK+DG FLGYLPDKNA
Sbjct:  781 MLPLLKRRAAKPRVLLAAMSRYNEKQDGTFLGYLPDKNA 819
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BLAST of mRNA_E_fasciculatus_S2_contig674.14857.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L0_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 6.160e-13
Identity = 33/39 (84.62%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:    1 MLPLLKRRAAKPRVLLAALSRYNEKEDGPFLGYLPDKNA 117
            M+PLLKRRAAKPRVLLAALSRYNEK+DG FLGYLP+K+ 
Sbjct:  445 MVPLLKRRAAKPRVLLAALSRYNEKQDGAFLGYLPEKST 483
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BLAST of mRNA_E_fasciculatus_S2_contig674.14857.1 vs.
Match: EsV-1-1 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C8_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 2.900e-12
Identity = 32/39 (82.05%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    4 LPLLKRRAAKPRVLLAALSRYNEKEDGPFLGYLPDKNAE 120
            LP LKRRA KP VLLAALSRYN K+DGPFLGY PDKN E
Sbjct:  150 LPGLKRRATKPCVLLAALSRYNNKQDGPFLGYSPDKNGE 188
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BLAST of mRNA_E_fasciculatus_S2_contig674.14857.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS0_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 1.680e-10
Identity = 30/39 (76.92%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 MLPLLKRRAAKPRVLLAALSRYNEKEDGPFLGYLPDKNA 117
            MLP LKRRA KPRV LA LSRYN K+DGPFLGY P KN 
Sbjct:  364 MLPGLKRRATKPRVALAPLSRYNNKQDGPFLGYTPSKNG 402
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig674.14857.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 1.700e-10
Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 MLPLLKRRAAKPRVLLAALSRYNEKEDGPFLGYLPDKNA 117
            M+PLLKRRAA  RVLLAA+SRYN K+DG FLGYLP+KN 
Sbjct:  812 MVPLLKRRAATLRVLLAAMSRYNNKQDGAFLGYLPEKNV 850
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig674.14857.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ8_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 7.290e-9
Identity = 33/50 (66.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:    1 MLPLLKRRAAKPRVLLAALSRYNEKEDGPFLGY-----------LPDKNA 117
            MLPLLKRRAAKPRVLLAA+SRYN K DG FLG            LP KNA
Sbjct:  391 MLPLLKRRAAKPRVLLAAMSRYNNKHDGAFLGXXXXXXXXXXXXLPGKNA 440
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig674.14857.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPN9_ECTSI)

HSP 1 Score: 46.2 bits (108), Expect = 1.110e-5
Identity = 22/33 (66.67%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:    1 MLPLLKRRAAKPRVLLAALSRYNEKEDGPFLGY 99
            MLP+LKRR  KPR LLAALSRY +K+D  F G+
Sbjct:    1 MLPVLKRRVTKPRALLAALSRYIDKQDRSFTGF 33
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig674.14857.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
Uncharacterized3.920e-1687.18protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized7.810e-1592.31protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized6.160e-1384.62protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
EsV-1-12.900e-1282.05n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
Uncharacterized1.680e-1076.92protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.700e-1076.92protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized7.290e-966.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.110e-566.67protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig674contigE_fasciculatus_S2_contig674:9796..10018 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score65.1
Seed ortholog evalue9e-09
Seed eggNOG ortholog2880.D7G2C8
Model size126
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-18_001910.1
Cds size126
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842330.1267214-CDS-E_fasciculatus_S2_contig674:9795..98591696842330.1267214-CDS-E_fasciculatus_S2_contig674:9795..9859Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig674 9796..9859 -
1696842330.1520681-CDS-E_fasciculatus_S2_contig674:9956..100181696842330.1520681-CDS-E_fasciculatus_S2_contig674:9956..10018Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig674 9957..10018 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig674.14857.1prot_E_fasciculatus_S2_contig674.14857.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig674 9796..10018 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig674.14857.1

>prot_E_fasciculatus_S2_contig674.14857.1 ID=prot_E_fasciculatus_S2_contig674.14857.1|Name=mRNA_E_fasciculatus_S2_contig674.14857.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=42bp
MLPLLKRRAAKPRVLLAALSRYNEKEDGPFLGYLPDKNAEG*
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mRNA from alignment at E_fasciculatus_S2_contig674:9796..10018-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig674.14857.1 ID=mRNA_E_fasciculatus_S2_contig674.14857.1|Name=mRNA_E_fasciculatus_S2_contig674.14857.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=223bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig674:9796..10018- (Ectocarpus fasciculatus EfasUO2)
ATGCTCCCGCTTCTGAAGCGGAGGGCGGCGAAGCCTCGTGTGCTCTTGGC
GGCCCTGTCTAGGTGCGTGGTGTTGCTTTAGTTCGACGGGCGTGTGTTGC
GGCCAATACACAATTTGAAAGAATTTAGCTGAAACGCTTTTACCCGCCCC
TTTCGACAGGTACAACGAGAAGGAGGACGGACCTTTCCTCGGGTACCTCC
CGGATAAAAACGCGGAAGGCTAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig674:9796..10018-

>mRNA_E_fasciculatus_S2_contig674.14857.1 ID=mRNA_E_fasciculatus_S2_contig674.14857.1|Name=mRNA_E_fasciculatus_S2_contig674.14857.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=126bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig674:9796..10018- (Ectocarpus fasciculatus EfasUO2)
ATGCTCCCGCTTCTGAAGCGGAGGGCGGCGAAGCCTCGTGTGCTCTTGGC
GGCCCTGTCTAGGTACAACGAGAAGGAGGACGGACCTTTCCTCGGGTACC
TCCCGGATAAAAACGCGGAAGGCTAA
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