mRNA_E_fasciculatus_S2_contig6735.14854.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig6735.14854.1
Unique NamemRNA_E_fasciculatus_S2_contig6735.14854.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig6735.14854.1 vs.
Match: AMP-binding (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JW39_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 8.470e-31
Identity = 68/76 (89.47%), Postives = 69/76 (90.79%), Query Frame = 3 
Query:  249 MQATIRLGGSSVARGLPRRPRPPSLAALSSAWADPTSCSHNGFASTSAAVAFGSRHHFGSKAAAASPPVHATPHYM 476
            MQAT+RLGGSSVARGLPRR RPPSLAALSSAWADPT CSHNGFA TSA V FGSRHH GSKA AASPPVHATPHYM
Sbjct:    1 MQATLRLGGSSVARGLPRRSRPPSLAALSSAWADPTPCSHNGFAGTSA-VTFGSRHHLGSKAPAASPPVHATPHYM 75
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6735.14854.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
AMP-binding8.470e-3189.47domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig6735contigE_fasciculatus_S2_contig6735:4866..5341 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size478
Hectar predicted targeting categoryother localisation
Exons1
Cds size228
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842329.7964706-UTR-E_fasciculatus_S2_contig6735:4865..51131696842329.7964706-UTR-E_fasciculatus_S2_contig6735:4865..5113Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig6735 4866..5113 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842329.8078048-CDS-E_fasciculatus_S2_contig6735:5113..53411696842329.8078048-CDS-E_fasciculatus_S2_contig6735:5113..5341Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6735 5114..5341 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig6735.14854.1prot_E_fasciculatus_S2_contig6735.14854.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig6735 5114..5341 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig6735.14854.1

>prot_E_fasciculatus_S2_contig6735.14854.1 ID=prot_E_fasciculatus_S2_contig6735.14854.1|Name=mRNA_E_fasciculatus_S2_contig6735.14854.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=76bp
MQATIRLGGSSVARGLPRRPRPPSLAALSSAWADPTSCSHNGFASTSAAV
AFGSRHHFGSKAAAASPPVHATPHYM
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mRNA from alignment at E_fasciculatus_S2_contig6735:4866..5341+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig6735.14854.1 ID=mRNA_E_fasciculatus_S2_contig6735.14854.1|Name=mRNA_E_fasciculatus_S2_contig6735.14854.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=476bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6735:4866..5341+ (Ectocarpus fasciculatus EfasUO2)
CACACGCTCACACCACACCCAGTTCTTCTTCGCCATAGAAAATCAAACAA
GACGAAGGATTCCTGAGCGAGCTTGGTTGTCTTGACGCGCACTCCACCAA
AAGCTCCTGTTCAAACCACGTATTGAGTCTCTCCGCTCTTTCTCTACACT
GCTGTCGTGTTTTTTTAACTTCAACTCGCTCGAAATACGCCGAAGACAGC
GACCGGGGGTACTGGAACGAGCACCACCAGCAGCTACTCCGAGAGACGAT
GCAGGCTACGATACGGTTAGGGGGCTCCTCGGTCGCCCGGGGGCTCCCTC
GGAGGCCTCGTCCGCCTTCGCTGGCGGCGCTCTCCTCTGCCTGGGCGGAC
CCCACGTCGTGTTCTCACAACGGATTTGCCTCGACTTCGGCGGCAGTGGC
CTTCGGATCCCGGCACCACTTCGGCTCGAAGGCAGCGGCCGCGAGCCCTC
CCGTCCACGCCACGCCGCACTACATG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6735:4866..5341+

>mRNA_E_fasciculatus_S2_contig6735.14854.1 ID=mRNA_E_fasciculatus_S2_contig6735.14854.1|Name=mRNA_E_fasciculatus_S2_contig6735.14854.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=228bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6735:4866..5341+ (Ectocarpus fasciculatus EfasUO2)
ATGCAGGCTACGATACGGTTAGGGGGCTCCTCGGTCGCCCGGGGGCTCCC
TCGGAGGCCTCGTCCGCCTTCGCTGGCGGCGCTCTCCTCTGCCTGGGCGG
ACCCCACGTCGTGTTCTCACAACGGATTTGCCTCGACTTCGGCGGCAGTG
GCCTTCGGATCCCGGCACCACTTCGGCTCGAAGGCAGCGGCCGCGAGCCC
TCCCGTCCACGCCACGCCGCACTACATG
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