mRNA_E_fasciculatus_S2_contig6731.14852.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig6731.14852.1
Unique NamemRNA_E_fasciculatus_S2_contig6731.14852.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig6731.14852.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP71_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 1.290e-40
Identity = 77/79 (97.47%), Postives = 79/79 (100.00%), Query Frame = 1 
Query:    1 LLSSDLSALRASSVAASSPETAAVLETTVASLVKHRYGRANPTLREEDTGWRRDLDTLRHAELSHVASLVRGPQRPGKG 237
            LLS+DLSALRASSVAASSPETAAVLETTVASLVKHRYGRANPTLREEDTGWRRDL+TLRHAELSHVASLVRGPQRPGKG
Sbjct:   85 LLSTDLSALRASSVAASSPETAAVLETTVASLVKHRYGRANPTLREEDTGWRRDLETLRHAELSHVASLVRGPQRPGKG 163
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6731.14852.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.290e-4097.47protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP71... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig6731contigE_fasciculatus_S2_contig6731:5737..7217 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score149.1
Seed ortholog evalue9.1e-34
Seed eggNOG ortholog2880.D7FP71
Model size242
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs2CQHN@1,2S453@2759
Cds size240
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842329.6653547-CDS-E_fasciculatus_S2_contig6731:5736..57941696842329.6653547-CDS-E_fasciculatus_S2_contig6731:5736..5794Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6731 5737..5794 +
1696842329.675108-CDS-E_fasciculatus_S2_contig6731:7035..72171696842329.675108-CDS-E_fasciculatus_S2_contig6731:7035..7217Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6731 7036..7217 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig6731.14852.1prot_E_fasciculatus_S2_contig6731.14852.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig6731 5737..7217 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig6731.14852.1

>prot_E_fasciculatus_S2_contig6731.14852.1 ID=prot_E_fasciculatus_S2_contig6731.14852.1|Name=mRNA_E_fasciculatus_S2_contig6731.14852.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=80bp
LLSSDLSALRASSVAASSPETAAVLETTVASLVKHRYGRANPTLREEDTG
WRRDLDTLRHAELSHVASLVRGPQRPGKG*
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mRNA from alignment at E_fasciculatus_S2_contig6731:5737..7217+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig6731.14852.1 ID=mRNA_E_fasciculatus_S2_contig6731.14852.1|Name=mRNA_E_fasciculatus_S2_contig6731.14852.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1481bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6731:5737..7217+ (Ectocarpus fasciculatus EfasUO2)
CTGCTCAGCTCAGACCTCTCGGCCCTGCGTGCCTCGAGCGTGGCCGCTTC
CTCCCCCGGTGAGATGCCACGCCGCGTTATGTCTATTCCCGTGGTGTTGT
TGACATTGTGTTTTTGTTGGGCCATGTAATGCCATGTACCGGGTGAAGGT
TCCCGGGAGGTATCTACTGCTGTGTAGGTGTGCGGAGCGTTTTTTTGTTT
TTTTGTATTTTTGCAGATATTCGATGCAACAAGGGGGCTGCTGGTTCTCT
CTCGGTGAGGACTCTTTCATAGGCATAGGCTGGTTTTGGACGCTGCCCTT
CCTTCGACGATCGAATGCGCGTCTGGCGCCCTGTGGTTCGACCTCGTGCC
CCGCGTAGCAGCTAGTTCGTATGGTCCTTGCGGATGACGTCACGTGCTTT
TGAGTTCTTGGAATGGTAGCATACATCATGTAGTAGGCGAGGCTACTGCT
GCTGCGTGTACCTTTGGAACGGTTGGGGGCGAAGCTCTGACAAAATGACA
CGTGCAAGGGGCACGGCGGTGACCGTTAAAGTCTGGCGCGTCGGTGTGTA
GGTAATTTTGAAGCTGCTGTTGCTGTAACAAGTTTCGGCATGCTTTCCTA
CAGTATAGTGCGACGGAAGATCCTCCAATAGAGATCCCGAGTCGAAAGAG
TAGCGTTGTTCTACAAGGTTTCAGTGGCTTTGGTCCTTGTAATACTAGTA
GACGGACACGCGGCCATGTGAACTACTGTAGACTTGCTGTAACGAAGGAC
CCGCCTTCGTGAAAAGCAGCATGATTCTACATGTAGTCTACCCGCTGTAG
GCTTTAGCAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCCCCTTGCCGGCGTAGACGAAAAAATGTACATTACCG
AACATCCGACACGGCGGTTGATGCCTCCCTTTACTATTGTAATGCTGCTG
CCGGGCACGCGTAAGCGAGGTTCCACAAAAGCGCGGGCATACGCCCTGGA
ACGAAATGCCACTCACCCCCGTAACTGGCCGAGCGTATCAAAGCAGTGGT
ACCGTAGTCCCGATATCGGACACCGCGGTCCCGAGTATTGCGGGTCCCAA
TACTCGGTGGTAAAAATCGCGAGTTGGCTACCATGCTAGGAGCTTGTTAC
CCAATACCCAATGCCCAACAGCAGTGCGGTGTCCCGAAAAAACGCGCGGT
GATATTTGCCTGTCCCGATACCACGGTATATCTGGACTACGATTGCTGCA
CCAAGAAGCCGACCGCGTGGCGTTGCACTCCCTTTGGCATCTCCCTCAGA
GACGGCGGCGGTGCTGGAGACAACTGTGGCATCTCTGGTCAAGCACCGCT
ACGGCAGGGCTAACCCCACATTGAGGGAGGAAGACACGGGATGGAGGAGG
GATCTGGACACCCTCAGGCACGCCGAGTTGAGCCACGTGGCTTCATTGGT
GCGCGGCCCTCAGCGCCCGGGAAAGGGGTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6731:5737..7217+

>mRNA_E_fasciculatus_S2_contig6731.14852.1 ID=mRNA_E_fasciculatus_S2_contig6731.14852.1|Name=mRNA_E_fasciculatus_S2_contig6731.14852.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=240bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6731:5737..7217+ (Ectocarpus fasciculatus EfasUO2)
CTGCTCAGCTCAGACCTCTCGGCCCTGCGTGCCTCGAGCGTGGCCGCTTC
CTCCCCCGAGACGGCGGCGGTGCTGGAGACAACTGTGGCATCTCTGGTCA
AGCACCGCTACGGCAGGGCTAACCCCACATTGAGGGAGGAAGACACGGGA
TGGAGGAGGGATCTGGACACCCTCAGGCACGCCGAGTTGAGCCACGTGGC
TTCATTGGTGCGCGGCCCTCAGCGCCCGGGAAAGGGGTGA
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