mRNA_E_fasciculatus_S2_contig6720.14838.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig6720.14838.1
Unique NamemRNA_E_fasciculatus_S2_contig6720.14838.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6720.14838.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig6720contigE_fasciculatus_S2_contig6720:6478..7507 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size364
Hectar predicted targeting categoryother localisation
Exons2
Cds size363
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842328.4745426-CDS-E_fasciculatus_S2_contig6720:6477..67091696842328.4745426-CDS-E_fasciculatus_S2_contig6720:6477..6709Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6720 6478..6709 +
1696842328.4851232-CDS-E_fasciculatus_S2_contig6720:7376..75071696842328.4851232-CDS-E_fasciculatus_S2_contig6720:7376..7507Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6720 7377..7507 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig6720.14838.1prot_E_fasciculatus_S2_contig6720.14838.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig6720 6478..7507 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig6720.14838.1

>prot_E_fasciculatus_S2_contig6720.14838.1 ID=prot_E_fasciculatus_S2_contig6720.14838.1|Name=mRNA_E_fasciculatus_S2_contig6720.14838.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=121bp
YAKGCTFVRFVGSQERGEEKRNLHMQCVGTWALMKTFDTPTKLNAAMRKH
IRDKSGIASNDRIKIVVKPLEGKQTFTDMIGYCCKDSGKGHYKTFRKNVT
KAEANTALTEYRALQRQTVKD
back to top

mRNA from alignment at E_fasciculatus_S2_contig6720:6478..7507+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig6720.14838.1 ID=mRNA_E_fasciculatus_S2_contig6720.14838.1|Name=mRNA_E_fasciculatus_S2_contig6720.14838.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1030bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6720:6478..7507+ (Ectocarpus fasciculatus EfasUO2)
TACGCCAAGGGATGCACCTTCGTTCGGTTTGTTGGTAGCCAAGAGAGGGG
GGAGGAGAAGCGCAACCTGCACATGCAATGCGTCGGGACGTGGGCGCTGA
TGAAGACCTTCGACACCCCTACCAAACTCAACGCGGCGATGCGAAAGCAC
ATTCGCGACAAGTCCGGCATCGCCTCCAACGACAGAATCAAGATTGTCGT
TAAGCCCCTAGAGGGGAAGCAGACGTTTACCGGTGAGGACTTGGTGCGGG
TGCATTCTTCACCACAGGGTTGGTTTTGTTCGGTGTCAATCTCTTGTCGT
TATTATTGCCGTGCGGTTACATGAACCCGCAAGCGGCAAACGTTTGTGCA
GACTCTTGCGAATTCCACATGGCAATGCGTGGCGTGTTGTATTGTTGGGG
GGGGGGGGGCAACTGTGTGGTGTGTTGTGTAGGGTCACATTTATTTTTCT
TTTCCTTCTTGATTTCATCTATTGTGTGTTGTGTGTGTTTTTTTTATTTG
TTATAACTATATTATGTGAGGTGTGTAGTATGGGGTGCTTCTTTTTTTGT
CTTGTGTGTGTCAAATAACATTAAAACTGCTGTGTGGTGTGTCTTGTGTG
GGGTGCTGCTTCTTGTTTTATTCTTCAGCTTTTCTTGTGGTTGTGTCTTG
TTTTTATTAACATATCATTTTTGTGTCTTGTGTGGGGTGCTTCTTTTTCA
TCTTGTGTGGTGTGCTGTGTGTTTGGTGCCTTTGAAACTAGCCTTTTGTT
CGCGAACATATAACATCCTGACCTTTCGTTTATAGCCGGATAGAGCCTAT
ATTTCAATAACATGTTGCTTCCTCGTACTGAACATAACCCTTTCCGTCCC
ACCCTCCGTTGCCCCTCATCCATGTTCCTGTCGCCACGCCATTCCTCAGA
TATGATAGGTTATTGTTGCAAGGACTCGGGGAAGGGCCACTACAAGACCT
TCCGAAAGAACGTGACGAAGGCCGAAGCCAACACGGCCTTGACAGAGTAC
CGCGCGCTGCAACGGCAGACCGTCAAAGAC
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6720:6478..7507+

>mRNA_E_fasciculatus_S2_contig6720.14838.1 ID=mRNA_E_fasciculatus_S2_contig6720.14838.1|Name=mRNA_E_fasciculatus_S2_contig6720.14838.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=363bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6720:6478..7507+ (Ectocarpus fasciculatus EfasUO2)
TACGCCAAGGGATGCACCTTCGTTCGGTTTGTTGGTAGCCAAGAGAGGGG
GGAGGAGAAGCGCAACCTGCACATGCAATGCGTCGGGACGTGGGCGCTGA
TGAAGACCTTCGACACCCCTACCAAACTCAACGCGGCGATGCGAAAGCAC
ATTCGCGACAAGTCCGGCATCGCCTCCAACGACAGAATCAAGATTGTCGT
TAAGCCCCTAGAGGGGAAGCAGACGTTTACCGATATGATAGGTTATTGTT
GCAAGGACTCGGGGAAGGGCCACTACAAGACCTTCCGAAAGAACGTGACG
AAGGCCGAAGCCAACACGGCCTTGACAGAGTACCGCGCGCTGCAACGGCA
GACCGTCAAAGAC
back to top