mRNA_E_fasciculatus_S2_contig6719.14834.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig6719.14834.1
Unique NamemRNA_E_fasciculatus_S2_contig6719.14834.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig6719.14834.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQV1_ECTSI)

HSP 1 Score: 354 bits (908), Expect = 6.640e-123
Identity = 180/192 (93.75%), Postives = 184/192 (95.83%), Query Frame = 1 
Query:    7 QAIQGQVQLFFGCLGALAARFGVRTPVEHAMFGGYISVLTGLTEFVLSIIAGEDEDSSSLLGISIMAFAEIVGSLLVLWRWRKGMANDRGGGSHRKSEQLQEDAKCSLCVGLISLAVVAALVLERLVSWADSATGICLSLYIVYEGVRSVWEARQQFVAHLEGDEGLRLVPLMHERLLVDKGEDTALLEETM 582
            +A QGQ+QLFFGCLG LAARFGVRTPVEHAMFGGYISVLTG TEFVLSIIAGEDEDSSSLLGISIMAFAEIVGSLLVLWRWRKGM NDRGG SHRKSEQLQEDAKCSLCVGLISLAVVAALVLERLVSWADSATGICLSLYIVYEG+ SVWEARQQFVAHLEGDEGLRLVPLMHERLL+DK E TALLEETM
Sbjct:    8 EAFQGQMQLFFGCLGGLAARFGVRTPVEHAMFGGYISVLTGATEFVLSIIAGEDEDSSSLLGISIMAFAEIVGSLLVLWRWRKGMGNDRGGASHRKSEQLQEDAKCSLCVGLISLAVVAALVLERLVSWADSATGICLSLYIVYEGLMSVWEARQQFVAHLEGDEGLRLVPLMHERLLLDKEEGTALLEETM 199
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BLAST of mRNA_E_fasciculatus_S2_contig6719.14834.1 vs.
Match: Transmembrane (protein 163 n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWE3_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.530e-8
Identity = 28/55 (50.91%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:   88 EHAMFGGYISVLTGLTEFVLSIIAGEDEDSSSLLGISIMAFAEIVGSLLVLWRWR 252
             +A+   Y+S++ GL EFV S +AGE EDS S++GI+ MA  E  GS LV WRW+
Sbjct:   35 RNAIISAYLSIVAGLLEFVFSYMAGESEDSVSIMGIASMAIIEAAGSALVAWRWQ 89
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BLAST of mRNA_E_fasciculatus_S2_contig6719.14834.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMU9_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 7.510e-7
Identity = 32/90 (35.56%), Postives = 50/90 (55.56%), Query Frame = 1 
Query:  280 GSHRKSEQLQEDAKCSLCVGLISLAVVAALVLERLVSWADSATGICLSLYIVYEGVRSVWEARQQF--------VAHLEGDEGLRLVPLM 525
            G+  +S  +  DA CS C G +S  V  AL+++ +V WADSA G+ L+ YI+++GV ++  AR ++         A   G  G R  PL+
Sbjct:    4 GAQLQSIVVITDAHCSRCTGYVSACVALALLIQGVVWWADSALGLLLACYIIFDGVSNMQAARAEWQTLKDAPGAAPTNGTGGARSEPLL 93
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6719.14834.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized6.640e-12393.75protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Transmembrane1.530e-850.91protein 163 n=2 Tax=Fibrocapsa japonica TaxID=9461... [more]
Uncharacterized7.510e-735.56protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig6719contigE_fasciculatus_S2_contig6719:1731..7282 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size585
Hectar predicted targeting categorysignal peptide
Exons5
Cds size585
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842327.9983993-CDS-E_fasciculatus_S2_contig6719:1730..18901696842327.9983993-CDS-E_fasciculatus_S2_contig6719:1730..1890Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6719 1731..1890 +
1696842328.0099812-CDS-E_fasciculatus_S2_contig6719:2475..26271696842328.0099812-CDS-E_fasciculatus_S2_contig6719:2475..2627Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6719 2476..2627 +
1696842328.0208726-CDS-E_fasciculatus_S2_contig6719:4899..49711696842328.0208726-CDS-E_fasciculatus_S2_contig6719:4899..4971Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6719 4900..4971 +
1696842328.0317774-CDS-E_fasciculatus_S2_contig6719:5652..57811696842328.0317774-CDS-E_fasciculatus_S2_contig6719:5652..5781Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6719 5653..5781 +
1696842328.0447018-CDS-E_fasciculatus_S2_contig6719:7210..72821696842328.0447018-CDS-E_fasciculatus_S2_contig6719:7210..7282Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6719 7211..7282 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig6719.14834.1prot_E_fasciculatus_S2_contig6719.14834.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig6719 1731..7282 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig6719.14834.1

>prot_E_fasciculatus_S2_contig6719.14834.1 ID=prot_E_fasciculatus_S2_contig6719.14834.1|Name=mRNA_E_fasciculatus_S2_contig6719.14834.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=195bp
MVQAIQGQVQLFFGCLGALAARFGVRTPVEHAMFGGYISVLTGLTEFVLS
IIAGEDEDSSSLLGISIMAFAEIVGSLLVLWRWRKGMANDRGGGSHRKSE
QLQEDAKCSLCVGLISLAVVAALVLERLVSWADSATGICLSLYIVYEGVR
SVWEARQQFVAHLEGDEGLRLVPLMHERLLVDKGEDTALLEETM*
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mRNA from alignment at E_fasciculatus_S2_contig6719:1731..7282+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig6719.14834.1 ID=mRNA_E_fasciculatus_S2_contig6719.14834.1|Name=mRNA_E_fasciculatus_S2_contig6719.14834.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5552bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6719:1731..7282+ (Ectocarpus fasciculatus EfasUO2)
ATGGTGCAGGCCATTCAGGGCCAGGTGCAGCTGTTTTTCGGATGCCTGGG
GGCGTTGGCGGCGCGGTTCGGGGTGCGGACACCGGTCGAGCACGCCATGT
TCGGGGGCTACATCTCCGTCCTCACGGGCCTCACCGAGTTCGTCCTGTCC
ATCATCGCGGGTGCGTGCGCGTTTGTTATAGGGGGCGGGGGGGCGTACTC
TTATGTTTTGCATGCCTTCGTCGTTAGACCATTTACCACGCGTCCTCGAA
AAGACGGAGCATTGTTTCCACAGGACCGATCACCGGTGGCCAATCGTTCC
TTCTTACTTTGTTATGGGGGAGGGTGTGGTCATAGCCGTGCGTTTCGTAT
TCGTCTGACCTTTGACCCCGCATCCCTACAAAGCCGGAGGGGCGCGCATT
CTCGTGTTTTGCAGGCCTTAGTTGTTAGACCATGGACCACAGGCCCTCAA
GAGGGTGGAGCGGGTGTGTGCTGTGTGTGTGTTGTCGTAACCGTGGACGC
CGTAGTCGTTAGACCATTGACGTCGCATCCCTACACAGCTTGGACGGAAT
CTGCCGGGTTCTCACCAGACCAGGCTAGCACATCACCAAGCGGGCGGGAG
GGGGTGTACCCATGCCACAGACACACGCTTGGATTTCCGCGCGACGCCCA
CAGCCCTATCCAAGGACTCTTGTACTTGATGTCTGTATCGACGAAGCTTT
TCTTTCCCCACACAACACACAACATCAAAAAACGGCATGCGGCAGGGGAA
GATGAGGACAGCAGCTCGTTGCTCGGCATCTCCATCATGGCCTTCGCCGA
GATCGTGGGCAGCCTGCTCGTGCTGTGGCGCTGGAGGAAGGGCATGGCGA
ACGATAGGGGGGGGGGATCGCACCGAAAGTCGGAGCAACTCCAAGAGGTG
CCGTGGCAACGAGCTTGACTCTTGACTTGACGGTTAAACGAGCACAGCAG
TATTTACCACGCCAATCCATTTGAATTTTCTTGCCCGGGTGTATGTGTGT
AGCGGACGGGGGGGTAATGTAAGCGGGCGGCAACCTGTTTTTCGGTTGTC
GAGTTCCTTCTTGTGGGTCGTGTCGTACAGTACCTGCTACGTATCTTCCA
GGGTATACATATGAGCGTTTAGTATACGAGAGTGAAATCGTGTTACTGGA
GTGGAGTTTTCGTCTTGGCAGCGCCTCTGTGGGTGGCGATTAATGGCTAC
TCCTAAAGCGTGTGGCGCAGTCCCTGCAGAAGAGGGGGAGAGTGAAAATT
CACTACCCCTTGTCAGAGCTTGCGACTGCCGTCACCATCCGCAGTCATCC
AATCCCGCGCAGACTGCTGCATCTAAGAAGATCCATCCACCTCGCACGCC
GTTTGCCGTCGATGCAGCTTTGAACCCCTCTTCTGTCCAATTATTGTCAG
TCCAGCGAGATCTGTGTTGCGTTGAAGAAATGCAGTAGTTTGTATGATTT
ATATATGATTCACATACGCATCGTAAAGGTTCCTGATCGATTCACAATTA
TCAACGTTCGAACAGCGCGGCAGCACCGTGAACAGTTGCGCTGCCAAACC
GGATACGTGCGTCAGCTCTGGCTGCTGTGCTTGCAGTTTGACGAGCGCTG
GCTAGATCGGTTTCTCAGCCCCACTCGTCAACTTCTAAGATTGTGGTTGT
TGTTCATGTTGGTGATGCAATTTCTATCGGCAGGTGTACTTCGCCGGGGC
GATCGCGTTGATGACGATGCTGCTCGGTTTGATGCTGCTGCACACCAGCG
TGACAGATTTAAGTGAGAGCGAGACAGAGTGCAAGACATGCGTTACGAGC
AGAACTTTTGTTTTGTGCTATTTCCTTTGGGGTGATGTTGCTCGAAACGA
GCGCCAAACATATGCATGGGAGAGAGCAAGGCATGCGAATGGTACGGAGC
TTTTTCTGTTTTGGTCTGGGGTACCTTCCCATTGACTGAACGCTTTCACA
AGCCGGTAGTCATGCCAATGCTCCGAACCCTTTTCTGTTTTTGGTTTGGC
GTTCCTCCCCAATGACTGAATTATATCAATGCTTTCACAAGCCCGTAGAC
CCCCCTACTCCTGAGGCAGCAATGAGAGGGTTTGGGGCAGATAACTTTCC
ACGGAAGCGTTTGAGGCCGGCGGCGCCATAGCACGTCACATTTCAGATCC
TGTCGAGGACGCGTGGCCAATGGTCCAACAACAAGGCATGCACACACACA
CACACACACACCCGTCTTCTCGAGGACGCGTCGTCCATGATCTAACAACC
AAGGCATAGCAACACATGAGTACGACCCCCCCCCCCCTCACGATGATCGA
TTGCTTCTTGAACGACCAAGTGAATCCTGCACCGCCATCTAGCGTGGCGG
CCGGCATCTTCGTGTCGGCGTTCGGGGCGTCGTGCAGCTTCCTGCTCTGG
GCGTACAAAGCACACTACGGGAGGGTGCTGAGGAGCATGGTGCTCCTTGC
GGTGAGTCCCGGGGGCTCCGCGGCAATCGATTTTTCCCGGCGGGAGGGGG
GAGCAATGTTCGATACCCGGAGGGGGGCTAAGATTCACGGCGTACGAGGG
GTATTTATCAGGAGCATGAACCCCCTCTCTGGAAACTGGAAACTGGGGCA
TATGCCTGTCTATCGTGTACAAGCTCCCGAGGGAGGGTTATCGTTGGTGC
CATCGTGAGACTTCGCTGGGAATGAGTAACCCCAGGGATTCGTTCGTTGA
TATGCCCGGACGCTTGAGGTCTCCTCATGCATGCTTTTTTGTTTTATTTT
TTCTTTCTCCCGCGCACTCGGCAAACACGGAAAAGACGTTTCGCTCCTGT
TTCAACTCACCCCAATCATGCCCCCGAGCCTCTGAGTATGCCGGCGCGCC
CGCCCGGTGTCGCTCCGCAACCAACGGCGCTCAAGGCTAGTTGCTGCCTT
GGTTTCGAAACGGTGGCGGTAACTTGATGAGCCTTCGTTTTCGCCCCATT
TTGGAGTGCCGCTGTATGTACTGCCATTGCCACCACCTCGAGCGGTAGTT
GATTTCCGGGCGTCATGTTCAGCACGATATTTTCTGTTTTGTCTAACGCT
GTGTTGGCTGACCTCGGGCTGGCTCCACGTTGTGTGTGTGATGTTTTTTT
CTTTTTAATATGACACATCGAATCGAACCCATCTCTATCCACACTTTTGT
TCCTTTTTTTTTTTCGCAGGATGCCAAGTGCTCCCTCTGCGTGGGTCTCA
TTTCATTGGCAGTTGTGGCGGCGCTAGTGCTGGAACGACTCGTGAGTGTG
CATACGATCCGTGCCGTATCGATCTGTGCCAAAGGACGCTGTACTGCTGT
AGAAGGTTCAGGTTCGATTTACAAGAACCGAAAAAATAAGAACTGTTTTG
GGCAAGAACCGAATAAATAAGAATGTTTCCGGCAGAACAAGGAACCAAAT
TTCTTCGCAAGAAAGCACCGATAATCTGTTCTTCTCGAAGTATATTCTGT
TGTCGGTGGAAATTCGAAGACCATGGGTTTTTTTTTTGTCGCAGTTATCC
GCTTGTGTTCCTGGCTGCTTGTCATATCGTTGTTGAGGGCGGCCGTGGGA
ATGCCTTTGAGACGATTTTCTCGATACCTACGTACGACCGTGCCTTCGAT
GTGCGCTTGGTTCTCAACCCCCGACTTGTCCTTCAAACACCCAAAGAAGA
GCTGAAAAATTGCTCAAATTCATTACGCAGAATGACTAAATAATTAAAAT
ACCTTACGCAAGGATATATATTTATAATACATTTACGTATGAAGAGTTCC
TTCAGAAGTGAAATTCGAGAATAATTCGCTTGCTTCCAGTTATTTCTTGT
CGCAGACAGACATGGCGCATTTCGACGCCAGCGTGTTGCTCGCACGGTCC
CCCCCCCACCACCACCACCACCACCCCTCGTGTGCACGCGCATGCACGTA
TGCGTAAATGCGTACGGTACAGGTTTCGTGGGCAGATAGCGCTACGGGCA
TCTGCCTGTCGCTGTACATCGTGTATGAGGGGGTGAGGAGCGTGTGGGAA
GCGAGACAGCAGTTCGTCGCACACTTGGAGGGAGACGAGGGCCTGCGATT
GGTGAGTCATTCTCCTTTTTGCCCACAACACGCCGCTGCCATTCTTGTTT
CCTTTGCTTTTAGACGATATACCAGTACGTACACTCAAAGAAAAATAGCG
GTTCAACAGCAGTAGTCGAAGGGGATGGGTGTAAATGTCTCTTTTCTGAC
GAGTGCGTGTGTGTGCGTTCGAAGATCCTTGTGCCCATACCGCCGCCGCC
ATTCTTGCGCAAGTTTTTATTGCACATACGATCAGAGACAGAAATTGTTC
ATGTATGGTCACAGCAGCCGAAGGGGCTGAAACTGCTGGATACTTGGCTT
ATTTTCTGAGTGGGGGGTCAGACTACAAGGACGTGAAGGGGGGGAAACTG
CTGCATACAAGTTTTTTTTTCTGATTTTTTTTAGACTACAATTTTGAAAG
ACTACCCTTTCGAAATATAACCACAAGGAATGGGTTGAAGTCTAGTTGCT
GACGAGTGCGTGTGTGCGTGTTTGACGACGCTGCCCTGCTGATTTGAGTC
AGCAAATGTACGTCCTGGATACCTCAAACTCCATCTGTCATTTGTCTGCT
CGTTTTTGTTGGCATGCGTGTGCATGAAGTACGTGTTTGGGTGGGCGTCG
CCGGGCCGCGATCCGCTAGAGAACGGCGTCGTGTTTTTCTTTTGTTGTTT
TCCACGGCTCTTGTGATGTGATGTTTTGCTCGAACCCTCGGACCACTGGC
ATGCATGCTTGCGTACGACAACAACTCGTATTCAGCGTCCTGGCCAAAAT
CCTCCTGCTGAATAGTGTACTAAATTTACGATGCCCATCCACCTGCGTAG
AGCACCTACCAGATCGGTGGAAAATCTGACAGGAGGAGTGCCCCGGTTGA
GAAGGCTTTGCGACGAGACGTTGCCCAGAGTGAAGTATGGTTGCTGTCAT
CATTGCAAACGAGTTGTGCACAATCTGCACCGTTTACGTTGCCTTGCTTT
TGCCTCTCTGTCGCAACGGAAGAGGCGACTGGGAAAGTCGGGGAAAGAAG
AAAGCTCGTGTCGTGCGTCTTGCTTGATATGGTTTGTGTTGAGCTGTGCG
TGCACATGTTCTTGACGATTGCGCCGCCACATAGCTCCTGCCTCATTCTC
TGGCCCCCCTCGCCCCGCCAATACAAGAGCATTTACTCAGACAGCTCTTG
TTATGCGTCTTGACATGGTTGATGTTCAGCTGTGCATGTACATGTCTTTC
ACGATTGCGCCGCCGCATGGCTCCTGCTTCATCCTTTGCCCCCCCCCCCC
CCCCAACACCAAGCAGGCCCCCCCTATGCCTGAGAGGCTGCCGGTAGACA
NNNNNNNNNNCCCCTCATTGCTCCTCTTTCCTCCTTTGCCCCCCCCCCCC
GCCGAAACTGCGAGGTCTATGGTCTAACGACTACGGCATGCATGATACTG
AGTACACCCCCCCCGCCGAAACCAAAGCAGGTCCCTCTGATGCATGAGAG
GCTGCTGGTAGACAAGGGAGAGGACACGGCTCTGCTCGAAGAGACCATGT
AA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6719:1731..7282+

>mRNA_E_fasciculatus_S2_contig6719.14834.1 ID=mRNA_E_fasciculatus_S2_contig6719.14834.1|Name=mRNA_E_fasciculatus_S2_contig6719.14834.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=585bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6719:1731..7282+ (Ectocarpus fasciculatus EfasUO2)
ATGGTGCAGGCCATTCAGGGCCAGGTGCAGCTGTTTTTCGGATGCCTGGG
GGCGTTGGCGGCGCGGTTCGGGGTGCGGACACCGGTCGAGCACGCCATGT
TCGGGGGCTACATCTCCGTCCTCACGGGCCTCACCGAGTTCGTCCTGTCC
ATCATCGCGGGGGAAGATGAGGACAGCAGCTCGTTGCTCGGCATCTCCAT
CATGGCCTTCGCCGAGATCGTGGGCAGCCTGCTCGTGCTGTGGCGCTGGA
GGAAGGGCATGGCGAACGATAGGGGGGGGGGATCGCACCGAAAGTCGGAG
CAACTCCAAGAGGATGCCAAGTGCTCCCTCTGCGTGGGTCTCATTTCATT
GGCAGTTGTGGCGGCGCTAGTGCTGGAACGACTCGTTTCGTGGGCAGATA
GCGCTACGGGCATCTGCCTGTCGCTGTACATCGTGTATGAGGGGGTGAGG
AGCGTGTGGGAAGCGAGACAGCAGTTCGTCGCACACTTGGAGGGAGACGA
GGGCCTGCGATTGGTCCCTCTGATGCATGAGAGGCTGCTGGTAGACAAGG
GAGAGGACACGGCTCTGCTCGAAGAGACCATGTAA
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