prot_E-fasciculatus_F_contig15893.4038.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig15893.4038.1
Unique Nameprot_E-fasciculatus_F_contig15893.4038.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length137
Homology
BLAST of mRNA_E-fasciculatus_F_contig15893.4038.1 vs. uniprot
Match: D7G3E5_ECTSI (Spt4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3E5_ECTSI)

HSP 1 Score: 208 bits (530), Expect = 2.940e-67
Identity = 95/105 (90.48%), Postives = 99/105 (94.29%), Query Frame = 0
Query:    1 MSYNNYGDGLDVEEEGLDEFAGAEIPTSLKGLRACKRCSLVKGNDQFVNHGCENCPFLQMESDQARVQDCTTTYFSGLIAMMDPETSWVGKWQRISEWNSDAFVV 105
            MSYNNYGDGLD+EEEGLDEFAGAEIPTSLKGLRACKRCSLVKGNDQFVNHGCENCPFLQMESDQARVQDCTTTYFSGLIAMMDPE+SWVGKWQRISE     + +
Sbjct:    1 MSYNNYGDGLDLEEEGLDEFAGAEIPTSLKGLRACKRCSLVKGNDQFVNHGCENCPFLQMESDQARVQDCTTTYFSGLIAMMDPESSWVGKWQRISECRPGMYAI 105          
BLAST of mRNA_E-fasciculatus_F_contig15893.4038.1 vs. uniprot
Match: A0A835Z5B7_9STRA (Spt4/RpoE2 zinc finger-domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5B7_9STRA)

HSP 1 Score: 111 bits (278), Expect = 5.380e-29
Identity = 50/98 (51.02%), Postives = 67/98 (68.37%), Query Frame = 0
Query:    8 DGLDVEEEGLDEFAGAEIPTSLKGLRACKRCSLVKGNDQFVNHGCENCPFLQMESDQARVQDCTTTYFSGLIAMMDPETSWVGKWQRISEWNSDAFVV 105
            D  DVE+ G D    A++P  LK LRACKRC+LVK   QF   GCENCPFL++E    RV +CT++YFSG+IAM++P+ SWV +WQRI  +    + +
Sbjct:    9 DEEDVEDAGEDM---AQVPGELKALRACKRCALVKTLTQFTEQGCENCPFLRIEESAERVHECTSSYFSGMIAMLNPKESWVARWQRIRAFKPGMYAI 103          
BLAST of mRNA_E-fasciculatus_F_contig15893.4038.1 vs. uniprot
Match: A0A7S2IAX2_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IAX2_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.960e-28
Identity = 52/109 (47.71%), Postives = 66/109 (60.55%), Query Frame = 0
Query:    1 MSYNNYGDGLDVEEEGLDE----FAGAEIPTSLKGLRACKRCSLVKGNDQFVNHGCENCPFLQMESDQARVQDCTTTYFSGLIAMMDPETSWVGKWQRISEWNSDAFVV 105
            M+Y++   G   EEE L E     A A  P+SL+G+RACKRC ++K  DQF N GCENCPFLQME    R   CTT +F G  A+MDP  SWV KW R+  +    + +
Sbjct:   16 MNYHDDEAGEGEEEEELPEQVLNLAQARTPSSLRGMRACKRCGILKTFDQFFNEGCENCPFLQMEGGTERCNRCTTAFFEGQAAVMDPRASWVAKWLRVDAYVPGVYAI 124          
BLAST of mRNA_E-fasciculatus_F_contig15893.4038.1 vs. uniprot
Match: A0A7S3LYU5_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3LYU5_9STRA)

HSP 1 Score: 109 bits (272), Expect = 3.460e-28
Identity = 42/88 (47.73%), Postives = 65/88 (73.86%), Query Frame = 0
Query:   18 DEFAGAEIPTSLKGLRACKRCSLVKGNDQFVNHGCENCPFLQMESDQARVQDCTTTYFSGLIAMMDPETSWVGKWQRISEWNSDAFVV 105
            +E+  A+IP   KGLRAC RCSL+K  +QF + GCENC F+ +E ++ R+++CTT+YF G IA+++P+ SWV KWQRI+++    + +
Sbjct:    5 EEYITADIPDEFKGLRACLRCSLIKTFEQFNDKGCENCEFIDLEGNKGRIEECTTSYFEGAIALVEPQGSWVAKWQRIAQYQPGLYAI 92          
BLAST of mRNA_E-fasciculatus_F_contig15893.4038.1 vs. uniprot
Match: A0A2R6W3C5_MARPO (Transcription elongation factor SPT4 homolog n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6W3C5_MARPO)

HSP 1 Score: 103 bits (258), Expect = 3.630e-26
Identity = 51/99 (51.52%), Postives = 67/99 (67.68%), Query Frame = 0
Query:   21 AGAEIPTSL-KGLRACKRCSLVKGNDQFVNHGCENCPFLQMESDQARVQDCTTTYFSGLIAMMDPETSWVGKWQRISEWNSDAFVVFRT---PKDLAAM 115
            + A+IPTS  K LRAC RCSLVK   QF + GCENCPF  M+ D  RV DCTT  F+G+IA MDP +SW  +WQRIS++    + +  T   P+++AA+
Sbjct:    5 SAAQIPTSFGKELRACLRCSLVKTYKQFTDVGCENCPFFNMDQDNDRVLDCTTPNFAGVIASMDPTSSWAARWQRISKFVPGCYALSVTGLLPEEMAAI 103          
BLAST of mRNA_E-fasciculatus_F_contig15893.4038.1 vs. uniprot
Match: A0A7S0AK05_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AK05_9STRA)

HSP 1 Score: 103 bits (258), Expect = 5.400e-26
Identity = 40/91 (43.96%), Postives = 61/91 (67.03%), Query Frame = 0
Query:   15 EGLDEFAGAEIPTSLKGLRACKRCSLVKGNDQFVNHGCENCPFLQMESDQARVQDCTTTYFSGLIAMMDPETSWVGKWQRISEWNSDAFVV 105
            + + + A A +P++++G+RACKRC ++K  DQFV+ GCENCPFL+M  D  +V  CTT ++ G  A+MDP  SWV KW R+  +    + +
Sbjct:   12 QNVADLAQASVPSAVRGIRACKRCGILKTLDQFVDDGCENCPFLEMVDDPEKVNACTTAFYEGQAAVMDPRESWVAKWLRVDNYLPGCYAI 102          
BLAST of mRNA_E-fasciculatus_F_contig15893.4038.1 vs. uniprot
Match: B7FXW7_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FXW7_PHATC)

HSP 1 Score: 103 bits (258), Expect = 6.050e-26
Identity = 44/105 (41.90%), Postives = 63/105 (60.00%), Query Frame = 0
Query:    1 MSYNNYGDGLDVEEEGLDEFAGAEIPTSLKGLRACKRCSLVKGNDQFVNHGCENCPFLQMESDQARVQDCTTTYFSGLIAMMDPETSWVGKWQRISEWNSDAFVV 105
            MSY+    G +     + E A A +PT+LK +RACKRC ++K  +QF++ GCENCPFL M  D  +V  CTT ++ G  A+MDP  SW  KW R+  +    + +
Sbjct:    1 MSYDEDERGEEDVPAQVAELANASVPTNLKAVRACKRCGILKTPEQFLDDGCENCPFLHMADDMQQVNKCTTAFYEGQAAVMDPRDSWAAKWIRVDAYLPGVYAI 105          
BLAST of mRNA_E-fasciculatus_F_contig15893.4038.1 vs. uniprot
Match: A0A662XZF9_9STRA (Spt4 domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XZF9_9STRA)

HSP 1 Score: 102 bits (254), Expect = 8.770e-26
Identity = 47/90 (52.22%), Postives = 61/90 (67.78%), Query Frame = 0
Query:    7 GDGLDVEEEGLDEFAG-AEIPTSLKGLRACKRCSLVKGNDQFVNHGCENCPFLQMESDQARVQDCTTTYFSGLIAMMDPETSWVGKWQRI 95
            G   D ++E LD+    A+IP + + LRAC  CSL+K   QF + GCENC FLQM  ++ RV +CT+ YF G+IAMM P+ SWV KWQRI
Sbjct:    5 GGARDEDDEELDDAVQHADIPNTFRELRACMTCSLIKTFTQFYDTGCENCAFLQMADNRQRVAECTSAYFEGMIAMMQPKESWVAKWQRI 94          
BLAST of mRNA_E-fasciculatus_F_contig15893.4038.1 vs. uniprot
Match: W4GN44_9STRA (Spt4 domain-containing protein n=4 Tax=Aphanomyces TaxID=100860 RepID=W4GN44_9STRA)

HSP 1 Score: 103 bits (256), Expect = 9.150e-26
Identity = 46/96 (47.92%), Postives = 64/96 (66.67%), Query Frame = 0
Query:   11 DVEEEGLDE-FAGAEIPTSLKGLRACKRCSLVKGNDQFVNHGCENCPFLQMESDQARVQDCTTTYFSGLIAMMDPETSWVGKWQRISEWNSDAFVV 105
            D +++ +++    AEIPT+ + LRAC  CSLVK   QF   GC+NC FL M+ ++ RV DCTT YF G+IAMM P+ SWV KW+RI ++    + V
Sbjct:    4 DEDDDDVEQGVVHAEIPTTFRELRACMICSLVKTYSQFYESGCDNCGFLNMQDNRTRVTDCTTAYFEGMIAMMQPKESWVAKWRRIGKFVPGIYAV 99          
BLAST of mRNA_E-fasciculatus_F_contig15893.4038.1 vs. uniprot
Match: K3WRG9_GLOUD (Spt4 domain-containing protein n=33 Tax=Oomycota TaxID=4762 RepID=K3WRG9_GLOUD)

HSP 1 Score: 102 bits (254), Expect = 2.110e-25
Identity = 46/86 (53.49%), Postives = 60/86 (69.77%), Query Frame = 0
Query:   11 DVEEEGLDE-FAGAEIPTSLKGLRACKRCSLVKGNDQFVNHGCENCPFLQMESDQARVQDCTTTYFSGLIAMMDPETSWVGKWQRI 95
            D E++ LD+    A+IP + + LRAC  CSL+K   QF + GCENC FLQM  ++ RV +CT+ YF G+IAMM P+ SWV KWQRI
Sbjct:    8 DEEDDELDDAIVHADIPNTFRELRACMTCSLIKTFTQFYDTGCENCAFLQMADNRQRVAECTSAYFEGMIAMMQPKESWVAKWQRI 93          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15893.4038.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3E5_ECTSI2.940e-6790.48Spt4 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835Z5B7_9STRA5.380e-2951.02Spt4/RpoE2 zinc finger-domain-containing protein n... [more]
A0A7S2IAX2_9STRA1.960e-2847.71Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S3LYU5_9STRA3.460e-2847.73Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A2R6W3C5_MARPO3.630e-2651.52Transcription elongation factor SPT4 homolog n=1 T... [more]
A0A7S0AK05_9STRA5.400e-2643.96Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
B7FXW7_PHATC6.050e-2641.90Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A662XZF9_9STRA8.770e-2652.22Spt4 domain-containing protein n=1 Tax=Nothophytop... [more]
W4GN44_9STRA9.150e-2647.92Spt4 domain-containing protein n=4 Tax=Aphanomyces... [more]
K3WRG9_GLOUD2.110e-2553.49Spt4 domain-containing protein n=33 Tax=Oomycota T... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022800Spt4/RpoE2 zinc fingerSMARTSM01389Spt4_2coord: 32..96
e-value: 7.8E-27
score: 105.1
IPR022800Spt4/RpoE2 zinc fingerPFAMPF06093Spt4coord: 32..101
e-value: 7.9E-27
score: 93.2
IPR038510Spt4 superfamilyGENE3D3.30.40.210coord: 19..115
e-value: 5.3E-31
score: 108.6
IPR009287Transcription initiation Spt4PANTHERPTHR12882SUPPRESSOR OF TY 4coord: 22..100
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..111
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 112..131
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 132..136
NoneNo IPR availableTMHMMTMhelixcoord: 112..131
IPR029040RNA polymerase subunit RPABC4/transcription elongation factor Spt4SUPERFAMILY63393RNA polymerase subunitscoord: 26..97

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15893contigE-fasciculatus_F_contig15893:545..2363 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15893.4038.1mRNA_E-fasciculatus_F_contig15893.4038.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig15893 545..2460 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig15893.4038.1 ID=prot_E-fasciculatus_F_contig15893.4038.1|Name=mRNA_E-fasciculatus_F_contig15893.4038.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=137bp
MSYNNYGDGLDVEEEGLDEFAGAEIPTSLKGLRACKRCSLVKGNDQFVNH
GCENCPFLQMESDQARVQDCTTTYFSGLIAMMDPETSWVGKWQRISEWNS
DAFVVFRTPKDLAAMLLVLLLSFIAVVFPTVRSSKR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029040RPABC4/Spt4
IPR009287Spt4
IPR038510Spt4_sf
IPR022800Spt4/RpoE2_Znf