prot_E-fasciculatus_F_contig12643.2023.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig12643.2023.1
Unique Nameprot_E-fasciculatus_F_contig12643.2023.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length120
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12643.2023.1 vs. uniprot
Match: A0A6H5JGQ1_9PHAE (Transcription initiation factor TFIID subunit 2 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGQ1_9PHAE)

HSP 1 Score: 211 bits (536), Expect = 6.570e-63
Identity = 105/120 (87.50%), Postives = 109/120 (90.83%), Query Frame = 0 
Query:    1 RIPDGDLPGDARLSAVEVLLYGWVSTALRLEGGKHRWLVHSIAGHLLTKFAAELRGEEEKQHRLPLRLALSAQVALDCDLGCLSISPPTADLYIPDAIDPSTAYYARLKALLTLHMAEVR 120
            RIPDGDLPGDARLSAVEVLLYGWVSTALRLEGGKHRWLVH IAGHLLTKFAAELRGEEEKQHRL    A+   VALDCDLGC SISPPT DLYIPDAIDP+TAYYARLKA+L LHMAEV+
Sbjct:  471 RIPDGDLPGDARLSAVEVLLYGWVSTALRLEGGKHRWLVHGIAGHLLTKFAAELRGEEEKQHRL--WRAVQKAVALDCDLGCPSISPPTPDLYIPDAIDPATAYYARLKAVLILHMAEVK 588
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12643.2023.1 vs. uniprot
Match: D7G4X2_ECTSI (Transcription initiation factor TFIID subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4X2_ECTSI)

HSP 1 Score: 213 bits (542), Expect = 1.040e-61
Identity = 106/120 (88.33%), Postives = 110/120 (91.67%), Query Frame = 0 
Query:    1 RIPDGDLPGDARLSAVEVLLYGWVSTALRLEGGKHRWLVHSIAGHLLTKFAAELRGEEEKQHRLPLRLALSAQVALDCDLGCLSISPPTADLYIPDAIDPSTAYYARLKALLTLHMAEVR 120
            RIPDGDLPGDARLSAVEVLLYGWVSTALRLEGGKHRWLVH IAGHLLTKFAAELRGEEEKQHRL    A+   VALDCDLGC SISPPTADLYIPDAIDP+TAYYARLKA+L LHMAEV+
Sbjct:  474 RIPDGDLPGDARLSAVEVLLYGWVSTALRLEGGKHRWLVHGIAGHLLTKFAAELRGEEEKQHRL--WCAVQKAVALDCDLGCPSISPPTADLYIPDAIDPATAYYARLKAVLILHMAEVK 591
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12643.2023.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JGQ1_9PHAE6.570e-6387.50Transcription initiation factor TFIID subunit 2 n=... [more]
D7G4X2_ECTSI1.040e-6188.33Transcription initiation factor TFIID subunit 2 n=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12643contigE-fasciculatus_F_contig12643:71..858 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12643.2023.1mRNA_E-fasciculatus_F_contig12643.2023.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig12643 71..858 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig12643.2023.1 ID=prot_E-fasciculatus_F_contig12643.2023.1|Name=mRNA_E-fasciculatus_F_contig12643.2023.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=120bp
RIPDGDLPGDARLSAVEVLLYGWVSTALRLEGGKHRWLVHSIAGHLLTKF
AAELRGEEEKQHRLPLRLALSAQVALDCDLGCLSISPPTADLYIPDAIDP
STAYYARLKALLTLHMAEVR
back to top