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Homology
BLAST of mRNA_E-fasciculatus_F_contig1010.116.1 vs. uniprot
Match: A0A6H5JAI1_9PHAE (PPR_long domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAI1_9PHAE) HSP 1 Score: 262 bits (670), Expect = 3.560e-73 Identity = 140/187 (74.87%), Postives = 150/187 (80.21%), Query Frame = 0
Query: 1 MGLPARGRMPAWLEHIAIGLTLAWCTCAGDGFTGLSSAIDKSSCAFTLDGARPTHSACSNSRVFAQDSRAYRHVRRDGGSIRQVSGTSVPCELGDRVVDVGAGGKATRLGVLSRRRGDPLESSTRPRRAARRGRASKSLVKLKSILLEAKGGDWRTALTALDGFKISGGRLDTTSYNIAIAACGNGK 187
MGLPARG M AWLE IAI +TLA CTCAGDGFTGLSSAIDKSSCAF L GA PTHS CS+S + A++SR YRH RR+ GS R +SGT +PCEL VD G G+ATRLGVLSR+ PLESSTR R AARRG SKSLVKLKS LLEAK GDWRTAL ALD FKISGG LDTTSYNIAIAAC NGK
Sbjct: 1 MGLPARGSMFAWLERIAIAVTLACCTCAGDGFTGLSSAIDKSSCAFGLQGAMPTHSTCSDSELMAKNSRTYRHSRRERGSTRHLSGTRMPCELDAGAVDAGVSGEATRLGVLSRKGEGPLESSTRSRGAARRGGKSKSLVKLKSTLLEAKDGDWRTALAALDEFKISGGNLDTTSYNIAIAACSNGK 187
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 131..254
e-value: 2.1E-30
score: 107.4
coord: 255..358
e-value: 1.2E-35
score: 124.5
coord: 465..570
e-value: 1.2E-36
score: 127.8
coord: 359..464
e-value: 9.5E-37
score: 128.1 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 571..750
e-value: 1.5E-55
score: 190.7 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | SUPERFAMILY | 48452 | TPR-like | coord: 217..335 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF13041 | PPR_2 | coord: 172..219
e-value: 7.6E-9
score: 35.6
coord: 243..292
e-value: 9.9E-12
score: 44.9
coord: 523..571
e-value: 3.0E-14
score: 52.9
coord: 628..676
e-value: 1.1E-9
score: 38.3
coord: 698..745
e-value: 9.7E-9
score: 35.3 |
| IPR002885 | Pentatricopeptide repeat | TIGRFAM | TIGR00756 | TIGR00756 | coord: 631..665
e-value: 5.3E-6
score: 24.3
coord: 666..699
e-value: 2.7E-5
score: 22.1
coord: 246..279
e-value: 6.3E-9
score: 33.5
coord: 561..595
e-value: 8.8E-8
score: 29.9
coord: 317..349
e-value: 6.1E-7
score: 27.2
coord: 456..489
e-value: 6.9E-6
score: 23.9
coord: 175..208
e-value: 2.8E-6
score: 25.2
coord: 526..560
e-value: 6.3E-8
score: 30.3
coord: 351..385
e-value: 6.4E-8
score: 30.3
coord: 281..315
e-value: 1.4E-7
score: 29.2
coord: 702..735
e-value: 3.0E-6
score: 25.1
coord: 386..420
e-value: 3.6E-8
score: 31.1
coord: 596..630
e-value: 1.4E-5
score: 23.0
coord: 421..455
e-value: 2.1E-6
score: 25.5
coord: 491..525
e-value: 1.2E-5
score: 23.2
coord: 209..236
e-value: 1.2E-6
score: 26.3 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF01535 | PPR | coord: 596..624
e-value: 0.0077
score: 16.4
coord: 491..520
e-value: 0.0028
score: 17.8 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 524..558
score: 12.814 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 172..206
score: 11.257 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 699..733
score: 11.444 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 314..348
score: 11.093 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 384..418
score: 12.54 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 454..488
score: 11.224 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 349..383
score: 12.638 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 629..663
score: 12.156 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 489..523
score: 11.17 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 279..313
score: 12.518 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 664..698
score: 10.907 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 207..237
score: 10.435 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 594..628
score: 10.742 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 559..593
score: 12.178 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 419..453
score: 11.016 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 244..278
score: 13.603 |
| IPR033443 | Pentacotripeptide-repeat region of PRORP | PFAM | PF17177 | PPR_long | coord: 315..478
e-value: 5.6E-11
score: 42.2 |
| None | No IPR available | PANTHER | PTHR46128 | FAMILY NOT NAMED | coord: 168..322
coord: 288..434
coord: 581..747
coord: 415..582 |
| None | No IPR available | PHOBIUS | SIGNAL_PEPTIDE_C_REGION | Signal peptide C-region | coord: 28..38 |
| None | No IPR available | PHOBIUS | SIGNAL_PEPTIDE | Signal Peptide | coord: 1..38 |
| None | No IPR available | PHOBIUS | SIGNAL_PEPTIDE_H_REGION | Signal peptide H-region | coord: 16..27 |
| None | No IPR available | PHOBIUS | NON_CYTOPLASMIC_DOMAIN | Non cytoplasmic domain | coord: 39..750 |
| None | No IPR available | PHOBIUS | SIGNAL_PEPTIDE_N_REGION | Signal peptide N-region | coord: 1..15 |
| None | No IPR available | SIGNALP_EUK | SignalP-noTM | SignalP-noTM | coord: 1..28
score: 0.645 |
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >prot_E-fasciculatus_F_contig1010.116.1 ID=prot_E-fasciculatus_F_contig1010.116.1|Name=mRNA_E-fasciculatus_F_contig1010.116.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=751bp
MGLPARGRMPAWLEHIAIGLTLAWCTCAGDGFTGLSSAIDKSSCAFTLDG
ARPTHSACSNSRVFAQDSRAYRHVRRDGGSIRQVSGTSVPCELGDRVVDV
GAGGKATRLGVLSRRRGDPLESSTRPRRAARRGRASKSLVKLKSILLEAK
GGDWRTALTALDGFKISGGRLDTTSYNIAIAACGNGKQWATALRLLREMP
SEGVTPDVITYNSAIAACSKGGRWKEAMDLLQQMMAPTEGISPDVVTYNS
AIAACSNGGRWKEAMELLEQMVAQGVSPNLITYHSAVGACAKARRWKEAL
DLLEEMPKQGLPPNTRTYNSVIDACAKGGQWLEAVNLLGQMVTNDVPADV
ISYSSAIAACGRGGRWKEAMGLLEQMRTQGVSPNVISYNSAIDACAKGDR
WREALDLLREMKTVGLVPTVISYNTATAACAVNGRWVEALDLLKEMPAQG
IAPNTISYNSALDACAKGGQWERAVKLLRGMSAVGSDPDIISFNSAIDAC
ARGQQWQTAVELLREMPTAGLLPNAITYNSAIEACGRSTRWQEAMSLFSE
MPTRGLSPNVVTYNSMIEACGKGEQWELAVQLLAGMPSRGVAPDVISYNS
AIEACGKGEQWELALQLLKGMPTRRLKPDVISYNSAIAACAKSGRWREAL
GLLKYMAAVGLTPNTVSYGAAIHACGKGERWDVAVRILKEMQTHGATPNL
IAYSAAIDACAKQGRWKEAVDLLMDLRTQGLTPDTQTYHRVMSAFRRCSD
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Annotated Terms
The following terms have been associated with this polypeptide:
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