mRNA_E-fasciculatus_F_contig16530.4403.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16530.4403.1
Unique NamemRNA_E-fasciculatus_F_contig16530.4403.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16530.4403.1 vs. uniprot
Match: D7FUR7_ECTSI (SET and MYND domain containing 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUR7_ECTSI)

HSP 1 Score: 295 bits (756), Expect = 3.090e-93
Identity = 156/186 (83.87%), Postives = 162/186 (87.10%), Query Frame = 1 
Query:  169 NCRHCLQPCHISPGPAPEETPQGGMTSPPHPRSCAKCLRSVLCSLCVTPVDTAEAGXXXXXXGACAHGSLECDALVRLSALQREQPGLASSLLGGSTVYLRLLLQLLAMRSRELGTDPTAGSSAARAADAAACLSDMDDLEDHLDDLLDGGEMEARMGNTIGAARLVAPAAWKANQDVCSEFLGKL 726
            N R CLQP H+SP   PE TPQGG TSPPHPRSCAKCLRSVLCS C+T  D+AE G      G C+HGSLECDALVRLSALQREQP LASSLLGGSTVYLRLLLQLLAMRSRELGT+ TAGS+AARA DA A LSDMDDLEDHLDDLLDGGEMEARMGNTIGAARLVAPAAWKANQDVCSEFLGKL
Sbjct:   14 NRRRCLQPSHLSPRLVPEATPQGG-TSPPHPRSCAKCLRSVLCSRCITAADSAEVGGDG---GGCSHGSLECDALVRLSALQREQPDLASSLLGGSTVYLRLLLQLLAMRSRELGTNSTAGSAAARAGDATAYLSDMDDLEDHLDDLLDGGEMEARMGNTIGAARLVAPAAWKANQDVCSEFLGKL 195
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BLAST of mRNA_E-fasciculatus_F_contig16530.4403.1 vs. uniprot
Match: A0A6H5JVN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN9_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 1.460e-38
Identity = 73/101 (72.28%), Postives = 78/101 (77.23%), Query Frame = 1 
Query:  169 NCRHCLQPCHISPGPAPEETPQGGMTSPPHPRSCAKCLRSVLCSLCVTPVDTAEAGXXXXXXGACAHGSLECDALVRLSALQREQPGLASSLLGGSTVYLR 471
            N R CLQP H+SP   P+  PQ G TSPPHPRSCAKCLRSVLCS C+T  +T E G      G C+HGSLECDALVRLSALQREQP LASSLLGGSTVYLR
Sbjct:   14 NRRRCLQPSHLSPRLMPDAAPQRG-TSPPHPRSCAKCLRSVLCSRCITAAETVEVGGDG---GGCSHGSLECDALVRLSALQREQPDLASSLLGGSTVYLR 110
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BLAST of mRNA_E-fasciculatus_F_contig16530.4403.1 vs. uniprot
Match: A0A6H5KQZ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ9_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 2.460e-24
Identity = 49/50 (98.00%), Postives = 50/50 (100.00%), Query Frame = 1 
Query:  577 MDDLEDHLDDLLDGGEMEARMGNTIGAARLVAPAAWKANQDVCSEFLGKL 726
            MDDLEDHLDDLLDGGEMEAR+GNTIGAARLVAPAAWKANQDVCSEFLGKL
Sbjct:    1 MDDLEDHLDDLLDGGEMEARIGNTIGAARLVAPAAWKANQDVCSEFLGKL 50
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16530.4403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FUR7_ECTSI3.090e-9383.87SET and MYND domain containing 3 n=1 Tax=Ectocarpu... [more]
A0A6H5JVN9_9PHAE1.460e-3872.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQZ9_9PHAE2.460e-2498.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16530contigE-fasciculatus_F_contig16530:62..2450 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score295.4
Seed ortholog evalue2.4e-77
Seed eggNOG ortholog2880.D7FUR7
KEGG koko:K11426
EggNOG free text desc.SET domain
EggNOG OGsCOG2940@1,KOG2084@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSET domain protein
Ec32 orthologEc-19_004190.1
Exons4
Model size729
Cds size729
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16530.4403.1prot_E-fasciculatus_F_contig16530.4403.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16530 62..2450 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928122.2103117-CDS-E-fasciculatus_F_contig16530:61..2371622928122.2103117-CDS-E-fasciculatus_F_contig16530:61..237Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16530 62..237 +
1695995827.104353-CDS-E-fasciculatus_F_contig16530:61..2371695995827.104353-CDS-E-fasciculatus_F_contig16530:61..237Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16530 62..237 +
1622928122.2611103-CDS-E-fasciculatus_F_contig16530:1167..14611622928122.2611103-CDS-E-fasciculatus_F_contig16530:1167..1461Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16530 1168..1461 +
1695995827.127626-CDS-E-fasciculatus_F_contig16530:1167..14611695995827.127626-CDS-E-fasciculatus_F_contig16530:1167..1461Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16530 1168..1461 +
1622928122.27752-CDS-E-fasciculatus_F_contig16530:1945..20361622928122.27752-CDS-E-fasciculatus_F_contig16530:1945..2036Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16530 1946..2036 +
1695995827.1479282-CDS-E-fasciculatus_F_contig16530:1945..20361695995827.1479282-CDS-E-fasciculatus_F_contig16530:1945..2036Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16530 1946..2036 +
1622928122.2931151-CDS-E-fasciculatus_F_contig16530:2282..24501622928122.2931151-CDS-E-fasciculatus_F_contig16530:2282..2450Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16530 2283..2450 +
1695995827.1587217-CDS-E-fasciculatus_F_contig16530:2282..24501695995827.1587217-CDS-E-fasciculatus_F_contig16530:2282..2450Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16530 2283..2450 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16530.4403.1

>prot_E-fasciculatus_F_contig16530.4403.1 ID=prot_E-fasciculatus_F_contig16530.4403.1|Name=mRNA_E-fasciculatus_F_contig16530.4403.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=243bp
MSLASTVEVRSAGVAGNGCFARSRPGGGLVMIRAGTAVLEGARPVVWALK
DEHEGRNCRHCLQPCHISPGPAPEETPQGGMTSPPHPRSCAKCLRSVLCS
LCVTPVDTAEAGGGGGGSGACAHGSLECDALVRLSALQREQPGLASSLLG
GSTVYLRLLLQLLAMRSRELGTDPTAGSSAARAADAAACLSDMDDLEDHL
DDLLDGGEMEARMGNTIGAARLVAPAAWKANQDVCSEFLGKL*
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mRNA from alignment at E-fasciculatus_F_contig16530:62..2450+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16530.4403.1 ID=mRNA_E-fasciculatus_F_contig16530.4403.1|Name=mRNA_E-fasciculatus_F_contig16530.4403.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2389bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16530:62..2450+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCTTTGGCGTCGACAGTCGAGGTTCGTTCGGCCGGTGTCGCGGGGAA
TGGGTGCTTCGCGAGGTCAAGGCCCGGAGGAGGGCTGGTGATGATCAGGG
CCGGGACTGCGGTGCTCGAGGGAGCGAGGCCCGTGGTGTGGGCGTTGAAG
GACGAGCACGAGGGACGCAACTGCAGGTCGGCTACTCACCAACGGCTTGT
GTCCACTTTTGTGGTGCCCCCGTGAGGACGACCTTGTCTCTTTTGGCGTG
CAATGACCTGGCTCACCCCCGGTCACAGCAGTAAACGGCACAGACAGGAG
TTGATGTACGTATGGTGCACAGCAGCAGCGGTGCAGCGGTGTTCATGTTT
CCTGAGAGGCGCCGCGACTTTTGTTCCTGTTGGGGGCCAGGGTTTGATTT
GTGACCAGCAGTGCGTGGCTTCGCAGCAACGTATGGAACACGTGGGCGTC
GACGCCGGAGAGACTAGACCCGGTGTTTCCTGGTTAAAGTAGCAATTTTG
TTTCCTCCTCCTCCTCCCCGCGTATTTGGTTGGAGGCATGGGCACCAGCC
CGCCTCCGCTGTACCGGTCATTGGCCCAGCGTGTCCATGAACGTAATTAT
CAGTGTGTCTTAAAAAGCAGACTCAAATTAAGCCCAGTATCCAGTAGGTT
TACTTCTCACTCGCTGCAAAGACTAAGACTTTCAACACATGCCCTTCCAC
TGTGGTTACATCTCGAAGCTTTCGTCCAACTATTTTTGCAAATGAACAAC
GTCCTCGTTTTTTGTTTTTTGGAAACTCAAACTTGCTGCTGCACGAAGAG
AAGTCCCTTTCGTTTCGTGTGTCGATACGCCCGGCCTGGCGGCCCTGTGG
CCTTTGCCCTGCACGAAGAAATCTGCCGTGTGTTGCATGGGCGTTGACCT
TCCGTCTCGAACTTTCACTTGTTCAGACTACATGGGTCCGCCAAAGTTAG
CCGCCTCTCTCTCTCTCTCTCTCTCTCAAATAATTTTTGCGTGTACTTGT
ATTGTATTGACATTGAGTCCCCCTCTCTCGATCCCGGCTTCCTTCCGTCG
CCTCCGATGGCCGTCAACGATGCCACCGCCGCCGCCGACACTCATCCAAA
CCGCAGGCACTGTCTGCAGCCCTGCCACATCTCACCCGGACCCGCGCCCG
AGGAGACACCACAAGGAGGCATGACGTCTCCGCCTCACCCTCGAAGCTGC
GCCAAGTGTCTGAGATCAGTCCTGTGTTCTCTGTGCGTCACCCCGGTCGA
CACAGCGGAGGCTGGTGGTGGTGGTGGTGGTAGTGGTGCATGCGCTCACG
GGAGCCTGGAGTGTGATGCGCTGGTGCGGCTGTCGGCTTTGCAACGCGAG
CAACCGGGCCTGGCGAGCTCCCTGCTGGGCGGCAGCACGGTTTACCTCAG
GTGGGCGGCCCTGGTGTCCTGCTGGTGTACGTTTTTAGCATCGACCTCGC
TTCCCGACTGGCCAATGAAATTGCAACATCACCCTGCGGGGGGAACGACA
TTTTTTTTTGCAAAAAATGCGAAGCCTCGGTGACGGAAAAACACGTCTCA
AACGGATCACCACATAACACGTTGGCCCTTCGACGTGGCAGGCTGGTAGC
AATGTGCTTCGGGCACAGCAGTTTGGGATATTTCCGGCCACTGTTTCCTG
ACGACCGCACCGTGTTGATGGCCCTCTACCTCCCGGCGATCGCCAATCCT
ACAACAGCGCCCCTTTCGCGTAGCACGCCCCAAACCCGCGTGCAAACGGC
ACTGGTCTACAGGCGTGCTGCTGCCTCTGGCGAACGGTATGTTAAGTGAC
GCAAAAGAAATCTGCTGGGCAGGTGTGTCTGCGTCGTCCATGCTGTGCTC
ACCTTCGTTCTCAATCTCTCCTCGATCCCGACAGGCTTCTTTTGCAGCTG
CTCGCCATGCGCTCGAGGGAGCTCGGAACGGACCCAACTGCAGGGTCGTC
GGCGGCGCGGGCTGCGGATGCGGCGGTGAGTAAAAAGCACAGGGTTGTGC
CTCATATTGTTTGTCGTGTTTGGGTTCGGAATTTGCGCGTGTTTCTAGTC
TAGGCCGGCGGCGGCATATCCGTATCGGTGTCAAATTACGCATTCTTTTT
TGTCGAATACTAGCAGGACCGTTAGTGGTGCCCCGGCTCGAGCTACAACC
CTTTGACTTTTTACTTCTTTATGACCATGACCACCACCACCACCATCAAT
ATACTGAAAAACCATCACCAGGCGTGCCTGAGCGACATGGACGATCTCGA
AGACCACCTGGACGACCTCCTCGACGGCGGGGAGATGGAGGCTAGGATGG
GAAACACGATTGGAGCCGCTAGGCTGGTGGCGCCGGCCGCTTGGAAGGCG
AACCAGGACGTCTGCTCCGAGTTTCTCGGGAAGCTGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16530:62..2450+

>mRNA_E-fasciculatus_F_contig16530.4403.1 ID=mRNA_E-fasciculatus_F_contig16530.4403.1|Name=mRNA_E-fasciculatus_F_contig16530.4403.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1458bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16530:62..2450+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCTTTGGCGTCGACAGTCGAGGTTCGTTCGGCCGGTGTCGCGGGGAA
TGGGTGCTTCGCGAGGTCAAGGCCCGGAGGAGGGCTGGTGATGATCAGGG
CCGGGACTGCGGTGCTCGAGGGAGCGAGGCCCGTGGTGTGGGCGTTGAAG
GACGAGCACGAGGGACGCAACTGCAGATGTCTTTGGCGTCGACAGTCGAG
GTTCGTTCGGCCGGTGTCGCGGGGAATGGGTGCTTCGCGAGGTCAAGGCC
CGGAGGAGGGCTGGTGATGATCAGGGCCGGGACTGCGGTGCTCGAGGGAG
CGAGGCCCGTGGTGTGGGCGTTGAAGGACGAGCACGAGGGACGCAACTGC
AGGCACTGTCTGCAGCCCTGCCACATCTCACCCGGACCCGCGCCCGAGGA
GACACCACAAGGAGGCATGACGTCTCCGCCTCACCCTCGAAGCTGCGCCA
AGTGTCTGAGATCAGTCCTGTGTTCTCTGTGCGTCACCCCGGTCGACACA
GCGGAGGCTGGTGGTGGTGGTGGTGGTAGTGGTGCATGCGCTCACGGGAG
CCTGGAGTGTGATGCGCTGGTGCGGCTGTCGGCTTTGCAACGCGAGCAAC
CGGGCCTGGCGAGCTCCCTGCTGGGCGGCAGCACGGTTTACCTCAGGCAC
TGTCTGCAGCCCTGCCACATCTCACCCGGACCCGCGCCCGAGGAGACACC
ACAAGGAGGCATGACGTCTCCGCCTCACCCTCGAAGCTGCGCCAAGTGTC
TGAGATCAGTCCTGTGTTCTCTGTGCGTCACCCCGGTCGACACAGCGGAG
GCTGGTGGTGGTGGTGGTGGTAGTGGTGCATGCGCTCACGGGAGCCTGGA
GTGTGATGCGCTGGTGCGGCTGTCGGCTTTGCAACGCGAGCAACCGGGCC
TGGCGAGCTCCCTGCTGGGCGGCAGCACGGTTTACCTCAGGCTTCTTTTG
CAGCTGCTCGCCATGCGCTCGAGGGAGCTCGGAACGGACCCAACTGCAGG
GTCGTCGGCGGCGCGGGCTGCGGATGCGGCGGCTTCTTTTGCAGCTGCTC
GCCATGCGCTCGAGGGAGCTCGGAACGGACCCAACTGCAGGGTCGTCGGC
GGCGCGGGCTGCGGATGCGGCGGCGTGCCTGAGCGACATGGACGATCTCG
AAGACCACCTGGACGACCTCCTCGACGGCGGGGAGATGGAGGCTAGGATG
GGAAACACGATTGGAGCCGCTAGGCTGGTGGCGCCGGCCGCTTGGAAGGC
GAACCAGGACGTCTGCTCCGAGTTTCTCGGGAAGCTGTGAGCGTGCCTGA
GCGACATGGACGATCTCGAAGACCACCTGGACGACCTCCTCGACGGCGGG
GAGATGGAGGCTAGGATGGGAAACACGATTGGAGCCGCTAGGCTGGTGGC
GCCGGCCGCTTGGAAGGCGAACCAGGACGTCTGCTCCGAGTTTCTCGGGA
AGCTGTGA
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