mRNA_E-fasciculatus_F_contig16529.4401.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16529.4401.1
Unique NamemRNA_E-fasciculatus_F_contig16529.4401.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16529.4401.1 vs. uniprot
Match: A0A835YS22_9STRA (Putative endoplasmic oxidoreductin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS22_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 8.650e-15
Identity = 40/59 (67.80%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:   22 QLWGKLETLGLGTALKIMLFSSDVEGEQDLKSLSRNELIALVNTAAQLAKSVGSVPGWR 198
            ++WGKLETLG+GTA+KI+L S   E  QDL   SRNE+IALVNTAAQLAKSVG+VP ++
Sbjct:  440 KMWGKLETLGIGTAIKILLASESCEEVQDL---SRNEVIALVNTAAQLAKSVGTVPKFK 495
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BLAST of mRNA_E-fasciculatus_F_contig16529.4401.1 vs. uniprot
Match: A0A7S2Y4A3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y4A3_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 4.900e-12
Identity = 38/59 (64.41%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:   22 QLWGKLETLGLGTALKIMLFSSDVEGEQDLKSLSRNELIALVNTAAQLAKSVGSVPGWR 198
            ++WGKL+TLGLGTALKI+L       EQ   SL RNE+IALVNTA QLA+SV SV  WR
Sbjct:  134 KMWGKLQTLGLGTALKILLTP-----EQVGYSLQRNEVIALVNTATQLARSVHSVQFWR 187
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BLAST of mRNA_E-fasciculatus_F_contig16529.4401.1 vs. uniprot
Match: A0A8J2SP79_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SP79_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 6.070e-12
Identity = 36/59 (61.02%), Postives = 43/59 (72.88%), Query Frame = 1 
Query:   22 QLWGKLETLGLGTALKIMLFSSDVEGEQDLKSLSRNELIALVNTAAQLAKSVGSVPGWR 198
            +LWGKL+ LGLGTALKI+L   DV G      L RNE++ALVNT AQLAKSV S+  W+
Sbjct:  435 RLWGKLQVLGLGTALKILLMEGDVLG---YGVLQRNEVVALVNTLAQLAKSVDSIRDWQ 490
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BLAST of mRNA_E-fasciculatus_F_contig16529.4401.1 vs. uniprot
Match: F0Y872_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y872_AURAN)

HSP 1 Score: 68.2 bits (165), Expect = 8.080e-12
Identity = 36/59 (61.02%), Postives = 43/59 (72.88%), Query Frame = 1 
Query:   22 QLWGKLETLGLGTALKIMLFSSDVEGEQDLKSLSRNELIALVNTAAQLAKSVGSVPGWR 198
            +LWGKL+ LGLGTALKI+L   D  G   L  L RNE++ALVNT AQLAKSV S+  W+
Sbjct:  337 RLWGKLQILGLGTALKILLADGDAFG---LGVLQRNEVVALVNTLAQLAKSVDSIRAWQ 392
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BLAST of mRNA_E-fasciculatus_F_contig16529.4401.1 vs. uniprot
Match: A0A7S3NI84_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NI84_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 2.900e-11
Identity = 35/59 (59.32%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:   22 QLWGKLETLGLGTALKIMLFSSDVEGEQDLKSLSRNELIALVNTAAQLAKSVGSVPGWR 198
            +LWG L+ LGLGTALKI+    D  G   L SL RNE++AL+NT AQLAKSV SV  W+
Sbjct:  418 RLWGTLQVLGLGTALKILFLQGDESG---LGSLQRNEVVALINTLAQLAKSVDSVRLWQ 473
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BLAST of mRNA_E-fasciculatus_F_contig16529.4401.1 vs. uniprot
Match: A0A7S2DCT6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DCT6_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.680e-9
Identity = 35/59 (59.32%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:   22 QLWGKLETLGLGTALKIMLFSSDVEGEQDLKSLSRNELIALVNTAAQLAKSVGSVPGWR 198
            +LWGKL+ LG+GTALKI++ S + EGE    +L RNE IAL+NT AQL+ SV SV  WR
Sbjct:  410 RLWGKLQVLGIGTALKILM-SREEEGEI---TLQRNEAIALLNTLAQLSTSVQSVQLWR 464
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BLAST of mRNA_E-fasciculatus_F_contig16529.4401.1 vs. uniprot
Match: A0A8B8NS75_9MYRT (endoplasmic reticulum oxidoreductin-1-like isoform X1 n=2 Tax=Rhodamnia argentea TaxID=178133 RepID=A0A8B8NS75_9MYRT)

HSP 1 Score: 60.8 bits (146), Expect = 3.130e-9
Identity = 33/59 (55.93%), Postives = 43/59 (72.88%), Query Frame = 1 
Query:   22 QLWGKLETLGLGTALKIMLFSSDVEGEQDLK-SLSRNELIALVNTAAQLAKSVGSVPGW 195
            +LWGKL+ LGLGTALKI LFS D++ E D    L RNE+IALVN  ++L++S+  V  W
Sbjct:  384 RLWGKLQVLGLGTALKI-LFSVDIQNEPDTSVQLQRNEVIALVNLLSRLSESIQFVHEW 441
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BLAST of mRNA_E-fasciculatus_F_contig16529.4401.1 vs. uniprot
Match: K3WB81_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WB81_GLOUD)

HSP 1 Score: 60.8 bits (146), Expect = 3.140e-9
Identity = 31/59 (52.54%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:   22 QLWGKLETLGLGTALKIMLFSSDVEGEQDLKSLSRNELIALVNTAAQLAKSVGSVPGWR 198
            +LWGK++T+G+GTALKI+L    V+  Q+L  L+RNELIAL+N A  L++SV  V  +R
Sbjct:  434 RLWGKIQTMGIGTALKILL----VDDVQNLPKLNRNELIALINVATNLSRSVDGVRMFR 488
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BLAST of mRNA_E-fasciculatus_F_contig16529.4401.1 vs. uniprot
Match: A0A5D6YAX0_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YAX0_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.500e-8
Identity = 32/59 (54.24%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:   22 QLWGKLETLGLGTALKIMLFSSDVEGEQDLKSLSRNELIALVNTAAQLAKSVGSVPGWR 198
            +LWGK++T+GLGTA+KI+L + DV+    L  L+RNELIAL+N A  LA+SV  V  +R
Sbjct:  431 RLWGKIQTMGLGTAIKILL-ADDVD---KLPRLNRNELIALINVATNLARSVDGVTMFR 485
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BLAST of mRNA_E-fasciculatus_F_contig16529.4401.1 vs. uniprot
Match: W7U2W8_9STRA (Endoplasmic oxidoreductin-2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U2W8_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.800e-8
Identity = 30/59 (50.85%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:   22 QLWGKLETLGLGTALKIMLFSSDVEGEQDLKSLSRNELIALVNTAAQLAKSVGSVPGWR 198
            +LWGKL+ LGLGTA+KI+L   +    +   S  RNE+I+L+NTA QLAKSV +V  ++
Sbjct:  399 RLWGKLQILGLGTAIKIVLGRPEDRTLEGSLSFQRNEVISLINTAHQLAKSVKAVENFQ 457
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16529.4401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YS22_9STRA8.650e-1567.80Putative endoplasmic oxidoreductin n=1 Tax=Tribone... [more]
A0A7S2Y4A3_9STRA4.900e-1264.41Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A8J2SP79_9STRA6.070e-1261.02Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0Y872_AURAN8.080e-1261.02Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S3NI84_9STRA2.900e-1159.32Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2DCT6_9STRA1.680e-959.32Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A8B8NS75_9MYRT3.130e-955.93endoplasmic reticulum oxidoreductin-1-like isoform... [more]
K3WB81_GLOUD3.140e-952.54Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A5D6YAX0_9STRA1.500e-854.24Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
W7U2W8_9STRA2.800e-850.85Endoplasmic oxidoreductin-2 n=2 Tax=Monodopsidacea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16529contigE-fasciculatus_F_contig16529:347..544 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.2
Seed ortholog evalue1.7e-09
Seed eggNOG ortholog44056.XP_009036749.1
Preferred nameERO1LB
KEGG koko:K10950,ko:K10976
KEGG Pathwayko04141,ko05110,map04141,map05110
GOsGO:0001666,GO:0003674,GO:0003756,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0005789,GO:0006082,GO:0006457,GO:0006458,GO:0006464,GO:0006508,GO:0006518,GO:0006520,GO:0006575,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006915,GO:0006950,GO:0006979,GO:0006986,GO:0007154,GO:0007165,GO:0007204,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008219,GO:0008593,GO:0009266,GO:0009628,GO:0009966,GO:0009987,GO:0010033,GO:0010260,GO:0010467,GO:0010646,GO:0010817,GO:0012501,GO:0012505,GO:0015035,GO:0015036,GO:0016020,GO:0016021,GO:0016043,GO:0016485,GO:0016486,GO:0016491,GO:0016667,GO:0016670,GO:0016853,GO:0016860,GO:0016864,GO:0016972,GO:0019471,GO:0019538,GO:0019725,GO:0019752,GO:0022417,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030070,GO:0030154,GO:0030176,GO:0030198,GO:0030425,GO:0030968,GO:0031224,GO:0031227,GO:0031974,GO:0031984,GO:0032501,GO:0032502,GO:0032879,GO:0033500,GO:0033554,GO:0034220,GO:0034599,GO:0034620,GO:0034641,GO:0034975,GO:0034976,GO:0035556,GO:0035966,GO:0035967,GO:0036211,GO:0036293,GO:0036294,GO:0036477,GO:0042175,GO:0042221,GO:0042445,GO:0042592,GO:0042593,GO:0042995,GO:0043005,GO:0043062,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043436,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0045444,GO:0045454,GO:0048513,GO:0048519,GO:0048523,GO:0048583,GO:0048731,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050873,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051179,GO:0051209,GO:0051234,GO:0051282,GO:0051283,GO:0051480,GO:0051604,GO:0051641,GO:0051649,GO:0051716,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0055085,GO:0055114,GO:0060401,GO:0060402,GO:0061077,GO:0065007,GO:0065008,GO:0070013,GO:0070059,GO:0070482,GO:0070588,GO:0070838,GO:0070887,GO:0071310,GO:0071453,GO:0071456,GO:0071704,GO:0071840,GO:0072503,GO:0072507,GO:0072511,GO:0097190,GO:0097193,GO:0097447,GO:0097458,GO:0097553,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098827,GO:0120025,GO:0120038,GO:0140096,GO:1901142,GO:1901564,GO:1901605
EggNOG free text desc.protein folding in endoplasmic reticulum
EggNOG OGsCOG5061@1,KOG2608@2759
COG Functional cat.OU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size198
Cds size198
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928121.8860373-CDS-E-fasciculatus_F_contig16529:346..5441622928121.8860373-CDS-E-fasciculatus_F_contig16529:346..544Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16529 347..544 +
1695995826.9354923-CDS-E-fasciculatus_F_contig16529:346..5441695995826.9354923-CDS-E-fasciculatus_F_contig16529:346..544Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16529 347..544 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16529.4401.1prot_E-fasciculatus_F_contig16529.4401.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16529 347..544 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16529.4401.1

>prot_E-fasciculatus_F_contig16529.4401.1 ID=prot_E-fasciculatus_F_contig16529.4401.1|Name=mRNA_E-fasciculatus_F_contig16529.4401.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=66bp
MFFVVVKQLWGKLETLGLGTALKIMLFSSDVEGEQDLKSLSRNELIALVN
TAAQLAKSVGSVPGWR
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mRNA from alignment at E-fasciculatus_F_contig16529:347..544+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16529.4401.1 ID=mRNA_E-fasciculatus_F_contig16529.4401.1|Name=mRNA_E-fasciculatus_F_contig16529.4401.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=198bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16529:347..544+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTTTTTGTCGTTGTGAAACAGCTGTGGGGAAAGCTGGAGACTCTCGG
GCTCGGAACGGCCCTGAAGATCATGCTCTTCTCGTCTGACGTGGAGGGAG
AGCAAGACCTCAAGTCTCTCAGCAGGAACGAGCTGATCGCCCTGGTGAAC
ACGGCGGCGCAACTGGCCAAGAGCGTCGGAAGCGTCCCGGGGTGGAGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16529:347..544+

>mRNA_E-fasciculatus_F_contig16529.4401.1 ID=mRNA_E-fasciculatus_F_contig16529.4401.1|Name=mRNA_E-fasciculatus_F_contig16529.4401.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=396bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16529:347..544+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTTTTTGTCGTTGTGAAACAGCTGTGGGGAAAGCTGGAGACTCTCGG
GCTCGGAACGGCCCTGAAGATCATGCTCTTCTCGTCTGACGTGGAGGGAG
AGCAAGACCTCAAGTCTCTCAGCAGGAACGAGCTGATCGCCCTGGTGAAC
ACGGCGGCGCAACTGGCCAAGAGCGTCGGAAGCGTCCCGGGGTGGAGAAT
GTTTTTTGTCGTTGTGAAACAGCTGTGGGGAAAGCTGGAGACTCTCGGGC
TCGGAACGGCCCTGAAGATCATGCTCTTCTCGTCTGACGTGGAGGGAGAG
CAAGACCTCAAGTCTCTCAGCAGGAACGAGCTGATCGCCCTGGTGAACAC
GGCGGCGCAACTGGCCAAGAGCGTCGGAAGCGTCCCGGGGTGGAGA
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