mRNA_E-fasciculatus_F_contig1652.4400.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1652.4400.1 vs. uniprot
Match: D8LU56_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU56_ECTSI) HSP 1 Score: 525 bits (1351), Expect = 4.110e-179 Identity = 252/275 (91.64%), Postives = 265/275 (96.36%), Query Frame = 1
Query: 1 QTVNGGLLNVADGGKARFLDSVVMNDAGVLTVSEDAMVHGGCVYNEGLVRFESTFTADGCKTVSSDTTSVIPGNGGGLWNGPGGKVVFKEAVEMKNCGERVGLRNWSSEGLDGGAIYTDGKVSFYEDAQFTDNEADEGGAIWIGVDGELKFLKRAKVTFTGNNSEGSGGHINNDGTLVLRNTGVFSDGYAGGSGGAIYAGDFSSMLFVKHVDFLDNTSGAHGGAIATNYPQIDDLPEDATYEGNSRTNADRDYECNNVYVNGDAGGGEDGYICIP 825
Q VNGGLLNVADGGKARFLDSV MND GVL+VSE+AMVHGGCVYNEGL+RFE TF+ADGCKTVSSDT SVIPG+GGGLWNGPGGK+VFKEAVEMKNCGER GLR+W S+GLDGGAIYTDGKVSFYEDAQFTDNEADEGGAI IGVDGELKFLK+AKVTFTGNNSEGSGGHINNDGTLVLRNTGVFSDGYAGGSGGAIYAGDFSSMLFVKHVDFLDNT+GAHGGAIAT+YP IDDLPEDATY+GNSRTNAD D+ECNNVYVNGDAGGGEDGYICIP
Sbjct: 105 QAVNGGLLNVADGGKARFLDSVAMNDVGVLSVSEEAMVHGGCVYNEGLIRFEGTFSADGCKTVSSDTASVIPGDGGGLWNGPGGKIVFKEAVEMKNCGERTGLRSWRSQGLDGGAIYTDGKVSFYEDAQFTDNEADEGGAICIGVDGELKFLKKAKVTFTGNNSEGSGGHINNDGTLVLRNTGVFSDGYAGGSGGAIYAGDFSSMLFVKHVDFLDNTAGAHGGAIATSYPNIDDLPEDATYQGNSRTNADSDFECNNVYVNGDAGGGEDGYICIP 379
BLAST of mRNA_E-fasciculatus_F_contig1652.4400.1 vs. uniprot
Match: A0A6H5L171_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L171_9PHAE) HSP 1 Score: 359 bits (921), Expect = 7.420e-116 Identity = 180/276 (65.22%), Postives = 206/276 (74.64%), Query Frame = 1
Query: 1 QTVNGGLLNVADGGKARFLDSVVMNDAGVLTVSEDAMVHGGCVYNEGLVRFESTFTADGCKTVSSDTTSVIPGNGGGLWNGPGGKVVFKEAVEMKNC-GERVGLRNWSSEGLDGGAIYTDGKVSFYEDAQFTDNEADEGGAIWIGVDGELKFLKRAKVTFTGNNSEGSGGHINNDGTLVLRNTGVFSDGYAGGSGGAIYAGDFSSMLFVKHVDFLDNTSGAHGGAIATNYPQIDDLPEDATYEGNSRTNADRDYECNNVYVNGDAGGGEDGYICIP 825
Q VNGG+LNVA G ARFLDSV M GV TV +D M HGGC+YNEG VRFE TFTAD C+ S T PGNGG LWNGP KVVFKEAVEM NC G++ N GL+GGA+YT+GK+SFYEDA FTDNE DEGGA+WIG G +KFLKR+K TF N SE GGHI N+G LV+RNT VF DG +G SGGAI AGD S M+F+KHV+F+ N++ AHGGAIAT YP I+ LP+DATYEGN NAD DY C +VYVNG GGEDGYIC+P
Sbjct: 12 QAVNGGVLNVAPEGYARFLDSVKMYSVGVNTVEDDTMQHGGCIYNEGYVRFEGTFTADACRVGS--TAEKYPGNGGALWNGPDAKVVFKEAVEMTNCYGKKTEDYNGRYTGLEGGAVYTEGKISFYEDAVFTDNEGDEGGAMWIGGTGVVKFLKRSKATFARNTSENRGGHIMNEGVLVMRNTAVFEDGVSGSSGGAINAGDASEMVFIKHVNFIGNSADAHGGAIATTYPNIEFLPQDATYEGNVLQNADYDYVCPDVYVNGSEDGGEDGYICLP 285
BLAST of mRNA_E-fasciculatus_F_contig1652.4400.1 vs. uniprot
Match: D7G627_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G627_ECTSI) HSP 1 Score: 360 bits (925), Expect = 6.810e-115 Identity = 180/276 (65.22%), Postives = 206/276 (74.64%), Query Frame = 1
Query: 1 QTVNGGLLNVADGGKARFLDSVVMNDAGVLTVSEDAMVHGGCVYNEGLVRFESTFTADGCKTVSSDTTSVIPGNGGGLWNGPGGKVVFKEAVEMKNC-GERVGLRNWSSEGLDGGAIYTDGKVSFYEDAQFTDNEADEGGAIWIGVDGELKFLKRAKVTFTGNNSEGSGGHINNDGTLVLRNTGVFSDGYAGGSGGAIYAGDFSSMLFVKHVDFLDNTSGAHGGAIATNYPQIDDLPEDATYEGNSRTNADRDYECNNVYVNGDAGGGEDGYICIP 825
+ VNGG+LNVA G ARFLDSV M GV TV +D M HGGC+YNEG VRFE TFTAD C+ S T PGNGG LWNGP KVVFKEAVEM NC G++ N GL+GGA+YT+GK+SFYEDA FTDNE DEGGA+WIGV +KFLKR+K TF N SE GGHI N+G LV+RNT VF DG +G SGGAI AGD S M+F+KHVDF+ N++ AHGGAIAT YP I+ LP+DATYEGN NAD DY C +VYVNG GGEDGYIC+P
Sbjct: 118 EAVNGGVLNVAPEGYARFLDSVKMYSVGVNTVEDDTMQHGGCIYNEGYVRFEGTFTADACRVGS--TAEKYPGNGGALWNGPDAKVVFKEAVEMTNCYGKKTEDYNGRYTGLEGGAVYTEGKISFYEDAVFTDNEGDEGGAMWIGVTAVVKFLKRSKATFARNTSENRGGHIMNEGVLVMRNTAVFEDGVSGSSGGAINAGDVSEMVFIKHVDFIGNSADAHGGAIATTYPNIEFLPQDATYEGNVLQNADYDYVCPDVYVNGSEDGGEDGYICLP 391
BLAST of mRNA_E-fasciculatus_F_contig1652.4400.1 vs. uniprot
Match: D7FSQ1_ECTSI (Adhesin-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSQ1_ECTSI) HSP 1 Score: 286 bits (733), Expect = 1.820e-86 Identity = 156/279 (55.91%), Postives = 189/279 (67.74%), Query Frame = 1
Query: 1 QTVNGGLLNVADGGKARFLDSVVMNDAGVLTVSEDAMVHGGCVYNEGLVRFESTFTADGCKTVSS--DTTSVIPGNGGGLWNGPGGKVVFKEAVEMKNCGERVGLRNWSSEGLDGGAIYTDGKVSFYEDAQFTDNEADEGGAIWIGVDGELKFLKRAKVTFTGNNSEGSGGHINNDGTLVLRNTGVFSDGYA-GGSGGAIYAGDFSSMLFVKHVDFLDNTSGAHGGAIATNYPQIDDLPEDATYEGNSRTN-ADRDYECNNVYVNGDAGGGEDGYICIP 825
Q V+GG+LNV +GGKARFL SV M+ GV TV M HGGCVYN+G VRFE F A+GC+TVS+ + + GNG G+WNG KVVFKEAVEM CG N + G DGGAIY+DG+VSF+EDA FT+NEADEGGA+WIGV G +KFLK AK TF N+ G+GG INN G LV+RNT F+ G + GSGG I G S M+FVK+V F S HG AI +Y ++ LPEDATY N N +D Y+C +VYV GD G ED Y+C+P
Sbjct: 110 QVVHGGVLNVEEGGKARFLSSVSMDGIGVDTVDLADMKHGGCVYNQGYVRFEGEFYANGCETVSTIEEYRVAMAGNGAGIWNGKDAKVVFKEAVEMDFCGNWPWTSNGAEPGSDGGAIYSDGEVSFFEDALFTNNEADEGGALWIGVTGVVKFLKSAKATFQSNSGPGNGGTINNYGVLVMRNTASFNQGRSTDGSGGCISCGPASEMVFVKNVLFDGCQSTEHGAAIYIDYDNVEFLPEDATYTDNFIVNNSDGFYKCEDVYVVGDGSGDEDAYMCLP 388 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1652.4400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1652.4400.1 >prot_E-fasciculatus_F_contig1652.4400.1 ID=prot_E-fasciculatus_F_contig1652.4400.1|Name=mRNA_E-fasciculatus_F_contig1652.4400.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=262bp MNDAGVLTVSEDAMVHGGCVYNEGLVRFESTFTADGCKTVSSDTTSVIPGback to top mRNA from alignment at E-fasciculatus_F_contig1652:9108..15024- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1652.4400.1 ID=mRNA_E-fasciculatus_F_contig1652.4400.1|Name=mRNA_E-fasciculatus_F_contig1652.4400.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=5917bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1652:9108..15024- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1652:9108..15024- >mRNA_E-fasciculatus_F_contig1652.4400.1 ID=mRNA_E-fasciculatus_F_contig1652.4400.1|Name=mRNA_E-fasciculatus_F_contig1652.4400.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1572bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1652:9108..15024- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |