mRNA_E-fasciculatus_F_contig16511.4396.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16511.4396.1
Unique NamemRNA_E-fasciculatus_F_contig16511.4396.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16511.4396.1 vs. uniprot
Match: A0A6H5K4V7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4V7_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 5.330e-40
Identity = 78/119 (65.55%), Postives = 94/119 (78.99%), Query Frame = 1 
Query:  730 EMVARHQAFHEDFAPFMARDFGVEFGISVIVGCTEGSVVHIIPKTYGGYRANEIEAMIEAGKVEAVELKRGEALVMGPGLIHRGVGYNTRNSRLFVAFLAGASKVASFLNTYSVLSMET 1086
            +   RHQAFHEDFA ++A  F  +FGISV+VGC EGS+VHIIPK+YGG +  E+E  I+AG+   V LKRGEALVMGPGL+HRG GYN RNSRLFVAF+ G S VASFLNTY+V ++ T
Sbjct:  730 DATKRHQAFHEDFAHYLAGFFKTDFGISVLVGCVEGSIVHIIPKSYGG-KDEEVERKIKAGEFLEVHLKRGEALVMGPGLVHRGTGYNVRNSRLFVAFMGGRSSVASFLNTYNVYNIVT 847
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16511.4396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K4V7_9PHAE5.330e-4065.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16511contigE-fasciculatus_F_contig16511:658..2228 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_004930.2
Exons2
Model size1091
Cds size1089
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928121.1281185-CDS-E-fasciculatus_F_contig16511:657..6791622928121.1281185-CDS-E-fasciculatus_F_contig16511:657..679Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16511 658..679 +
1695995826.5827131-CDS-E-fasciculatus_F_contig16511:657..6791695995826.5827131-CDS-E-fasciculatus_F_contig16511:657..679Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16511 658..679 +
1622928121.1432042-CDS-E-fasciculatus_F_contig16511:1161..22281622928121.1432042-CDS-E-fasciculatus_F_contig16511:1161..2228Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16511 1162..2228 +
1695995826.594394-CDS-E-fasciculatus_F_contig16511:1161..22281695995826.594394-CDS-E-fasciculatus_F_contig16511:1161..2228Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16511 1162..2228 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16511.4396.1prot_E-fasciculatus_F_contig16511.4396.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16511 658..2228 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16511.4396.1

>prot_E-fasciculatus_F_contig16511.4396.1 ID=prot_E-fasciculatus_F_contig16511.4396.1|Name=mRNA_E-fasciculatus_F_contig16511.4396.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=363bp
PANYGYRGPDQKIKGDRACKRCKDWFPAMTNLYQTRCKHCTKTAQFGNKQ
GGRRQYCAGHKEEGMINLGSTKCECGKTANYGVVGGRRTHCAEHKTEGMT
DKRTGKSNPGVVPRRTPSPEVVPSLAPKPVVAGTVVEKATAAFVEARAAA
VDFVTRSGEREVVDAGTSAPSGRTLGEPTPTAGVFVPSTTLSRAAGADVP
GEDQGASTAVGAQEEGTWSPASTASPAVSPAPARPSECDGGGEEMVARHQ
AFHEDFAPFMARDFGVEFGISVIVGCTEGSVVHIIPKTYGGYRANEIEAM
IEAGKVEAVELKRGEALVMGPGLIHRGVGYNTRNSRLFVAFLAGASKVAS
FLNTYSVLSMETV
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mRNA from alignment at E-fasciculatus_F_contig16511:658..2228+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16511.4396.1 ID=mRNA_E-fasciculatus_F_contig16511.4396.1|Name=mRNA_E-fasciculatus_F_contig16511.4396.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1571bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16511:658..2228+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCAGCTAACTATGGCTACCGAGGTGAGCCGCATTCAGTACGAACCAATCG
TGACAGTCCAGGCAAACACCCTTGCAACAGATCTGTACACGGGACGCTGT
AGTAGTACAGCACAGACGGACTTCACGTGTGCACACATTTTTTTTTTGCT
GTACATGTAGACGAGTAACACCTATTCATGAGCAACACTACCTTCGTAGC
GCCACACATGTCATGGAGAGAAGAATCGTTGTGTGCGTTGCAACGGTGCA
CCAGCTAACTATGGCTACCGAGGTGAGCCGCATACGAACCAATCGTGACA
GTCCAGGCAAACACCCTTGCAACAGATTTGTACACGGGACGCTGTAGTAG
TACAGCACAGACGTACTTCACGTGTGCACACAGCAGTACTGCTGTAGACG
AGTAACTGCGCGTGTAGAAGCACAATGGTGTCTTTCTCCGCACTTGTCTC
CGATCGCTTTCGAAAATCTGACAGCTGTGTTTCCTCCGCGCGTGCCTTTC
ATAGGTCCTGACCAGAAAATCAAAGGGGATCGTGCCTGTAAGCGATGTAA
GGACTGGTTTCCTGCCATGACCAACCTTTACCAAACGCGGTGTAAACATT
GCACGAAGACAGCGCAGTTTGGCAACAAACAAGGCGGTCGGAGGCAATAT
TGCGCAGGTCACAAAGAGGAAGGCATGATCAACCTGGGTAGTACCAAGTG
CGAATGTGGAAAAACGGCCAATTATGGCGTTGTTGGTGGCCGTCGGACGC
ACTGTGCTGAGCACAAAACAGAAGGGATGACCGATAAACGCACTGGAAAA
TCCAACCCGGGAGTCGTCCCCCGTCGAACCCCCAGCCCGGAAGTTGTCCC
CAGTCTAGCCCCCAAACCAGTGGTTGCCGGTACAGTGGTCGAGAAAGCAA
CAGCAGCATTCGTTGAAGCGAGGGCGGCCGCGGTGGATTTTGTTACCCGG
AGTGGTGAACGAGAGGTGGTGGACGCTGGGACGAGCGCGCCTTCCGGCAG
GACTCTCGGCGAACCTACACCAACAGCAGGTGTGTTCGTGCCTTCAACAA
CTTTGTCGAGAGCAGCAGGAGCAGACGTGCCGGGCGAGGACCAGGGGGCA
TCAACAGCTGTGGGTGCGCAGGAAGAGGGGACATGGTCACCAGCGTCAAC
AGCGTCACCAGCGGTATCTCCGGCACCGGCAAGACCTTCGGAGTGTGATG
GCGGTGGCGAGGAGATGGTGGCTCGTCATCAGGCTTTTCATGAAGACTTT
GCTCCGTTCATGGCAAGAGATTTTGGGGTAGAGTTTGGCATCTCCGTGAT
CGTAGGCTGCACGGAAGGGAGTGTTGTGCACATCATCCCCAAAACTTACG
GGGGGTATCGGGCGAACGAGATCGAGGCCATGATCGAAGCCGGCAAGGTA
GAAGCTGTCGAGTTAAAGCGCGGGGAGGCTTTGGTTATGGGACCGGGGTT
GATCCATCGCGGTGTGGGGTACAACACCAGAAACTCGAGGCTTTTCGTTG
CGTTCCTCGCAGGGGCGAGCAAAGTAGCGAGTTTCCTCAACACGTACAGC
GTGTTGAGCATGGAAACGGTC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16511:658..2228+

>mRNA_E-fasciculatus_F_contig16511.4396.1 ID=mRNA_E-fasciculatus_F_contig16511.4396.1|Name=mRNA_E-fasciculatus_F_contig16511.4396.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2178bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16511:658..2228+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCAGCTAACTATGGCTACCGAGCCAGCTAACTATGGCTACCGAGGTCCTG
ACCAGAAAATCAAAGGGGATCGTGCCTGTAAGCGATGTAAGGACTGGTTT
CCTGCCATGACCAACCTTTACCAAACGCGGTGTAAACATTGCACGAAGAC
AGCGCAGTTTGGCAACAAACAAGGCGGTCGGAGGCAATATTGCGCAGGTC
ACAAAGAGGAAGGCATGATCAACCTGGGTAGTACCAAGTGCGAATGTGGA
AAAACGGCCAATTATGGCGTTGTTGGTGGCCGTCGGACGCACTGTGCTGA
GCACAAAACAGAAGGGATGACCGATAAACGCACTGGAAAATCCAACCCGG
GAGTCGTCCCCCGTCGAACCCCCAGCCCGGAAGTTGTCCCCAGTCTAGCC
CCCAAACCAGTGGTTGCCGGTACAGTGGTCGAGAAAGCAACAGCAGCATT
CGTTGAAGCGAGGGCGGCCGCGGTGGATTTTGTTACCCGGAGTGGTGAAC
GAGAGGTGGTGGACGCTGGGACGAGCGCGCCTTCCGGCAGGACTCTCGGC
GAACCTACACCAACAGCAGGTGTGTTCGTGCCTTCAACAACTTTGTCGAG
AGCAGCAGGAGCAGACGTGCCGGGCGAGGACCAGGGGGCATCAACAGCTG
TGGGTGCGCAGGAAGAGGGGACATGGTCACCAGCGTCAACAGCGTCACCA
GCGGTATCTCCGGCACCGGCAAGACCTTCGGAGTGTGATGGCGGTGGCGA
GGAGATGGTGGCTCGTCATCAGGCTTTTCATGAAGACTTTGCTCCGTTCA
TGGCAAGAGATTTTGGGGTAGAGTTTGGCATCTCCGTGATCGTAGGCTGC
ACGGAAGGGAGTGTTGTGCACATCATCCCCAAAACTTACGGGGGGTATCG
GGCGAACGAGATCGAGGCCATGATCGAAGCCGGCAAGGTAGAAGCTGTCG
AGTTAAAGCGCGGGGAGGCTTTGGTTATGGGACCGGGGTTGATCCATCGC
GGTGTGGGGTACAACACCAGAAACTCGAGGCTTTTCGTTGCGTTCCTCGC
AGGGGCGAGCAAAGTAGCGAGTTTCCTCAACACGTACAGCGTGTTGAGCA
TGGAAACGGTCGTCCTGACCAGAAAATCAAAGGGGATCGTGCCTGTAAGC
GATGTAAGGACTGGTTTCCTGCCATGACCAACCTTTACCAAACGCGGTGT
AAACATTGCACGAAGACAGCGCAGTTTGGCAACAAACAAGGCGGTCGGAG
GCAATATTGCGCAGGTCACAAAGAGGAAGGCATGATCAACCTGGGTAGTA
CCAAGTGCGAATGTGGAAAAACGGCCAATTATGGCGTTGTTGGTGGCCGT
CGGACGCACTGTGCTGAGCACAAAACAGAAGGGATGACCGATAAACGCAC
TGGAAAATCCAACCCGGGAGTCGTCCCCCGTCGAACCCCCAGCCCGGAAG
TTGTCCCCAGTCTAGCCCCCAAACCAGTGGTTGCCGGTACAGTGGTCGAG
AAAGCAACAGCAGCATTCGTTGAAGCGAGGGCGGCCGCGGTGGATTTTGT
TACCCGGAGTGGTGAACGAGAGGTGGTGGACGCTGGGACGAGCGCGCCTT
CCGGCAGGACTCTCGGCGAACCTACACCAACAGCAGGTGTGTTCGTGCCT
TCAACAACTTTGTCGAGAGCAGCAGGAGCAGACGTGCCGGGCGAGGACCA
GGGGGCATCAACAGCTGTGGGTGCGCAGGAAGAGGGGACATGGTCACCAG
CGTCAACAGCGTCACCAGCGGTATCTCCGGCACCGGCAAGACCTTCGGAG
TGTGATGGCGGTGGCGAGGAGATGGTGGCTCGTCATCAGGCTTTTCATGA
AGACTTTGCTCCGTTCATGGCAAGAGATTTTGGGGTAGAGTTTGGCATCT
CCGTGATCGTAGGCTGCACGGAAGGGAGTGTTGTGCACATCATCCCCAAA
ACTTACGGGGGGTATCGGGCGAACGAGATCGAGGCCATGATCGAAGCCGG
CAAGGTAGAAGCTGTCGAGTTAAAGCGCGGGGAGGCTTTGGTTATGGGAC
CGGGGTTGATCCATCGCGGTGTGGGGTACAACACCAGAAACTCGAGGCTT
TTCGTTGCGTTCCTCGCAGGGGCGAGCAAAGTAGCGAGTTTCCTCAACAC
GTACAGCGTGTTGAGCATGGAAACGGTC
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