mRNA_E-fasciculatus_F_contig1651.4395.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1651.4395.1
Unique NamemRNA_E-fasciculatus_F_contig1651.4395.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1651.4395.1 vs. uniprot
Match: D8LLS3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLS3_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 3.690e-11
Identity = 31/53 (58.49%), Postives = 38/53 (71.70%), Query Frame = -1 
Query:    1 SPAAAQQGGKHQLHEVNRDFITHLNSCADLPNERTAVKGFVSVTADIICPEPK 159
            S   AQ+  + +L     DF+T+LNSC DLPNERT  +G VSVTADI+CPEPK
Sbjct:  224 SAGLAQEQQRRELEASGMDFVTYLNSCDDLPNERTPFEGVVSVTADIVCPEPK 276
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BLAST of mRNA_E-fasciculatus_F_contig1651.4395.1 vs. uniprot
Match: D8LLQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ5_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 4.450e-10
Identity = 30/53 (56.60%), Postives = 36/53 (67.92%), Query Frame = -1 
Query:    1 SPAAAQQGGKHQLHEVNRDFITHLNSCADLPNERTAVKGFVSVTADIICPEPK 159
            S   AQ+    +L     DF+T+LNSC DLPNER   +G VSVTADI+CPEPK
Sbjct:  226 SAGLAQEQRPRELEASGMDFVTYLNSCDDLPNERNPFEGVVSVTADIVCPEPK 278
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BLAST of mRNA_E-fasciculatus_F_contig1651.4395.1 vs. uniprot
Match: A0A6H5JJ01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ01_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 6.260e-10
Identity = 30/53 (56.60%), Postives = 36/53 (67.92%), Query Frame = -1 
Query:    1 SPAAAQQGGKHQLHEVNRDFITHLNSCADLPNERTAVKGFVSVTADIICPEPK 159
            S   AQ+  + +L     D +T L SC DLPNERT V+G VSVTADI+CPEPK
Sbjct:   84 SAGLAQEQVQRELEASGLDLVTFLKSCDDLPNERTPVEGIVSVTADIVCPEPK 136
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BLAST of mRNA_E-fasciculatus_F_contig1651.4395.1 vs. uniprot
Match: D8LLQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ0_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 2.100e-9
Identity = 29/49 (59.18%), Postives = 36/49 (73.47%), Query Frame = -1 
Query:    1 AQQGGKHQLHEVNRDFITHLNSCADLPNERTAVKGFVSVTADIICPEPK 147
            AQ+  + +L     DF+T L+SC DLPNERT  +G VSVTADI+CPEPK
Sbjct:  227 AQEQLQQELEASGMDFVTCLDSCGDLPNERTPFEGVVSVTADIVCPEPK 275
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BLAST of mRNA_E-fasciculatus_F_contig1651.4395.1 vs. uniprot
Match: D8LLQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ3_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 2.100e-9
Identity = 29/53 (54.72%), Postives = 36/53 (67.92%), Query Frame = -1 
Query:    1 SPAAAQQGGKHQLHEVNRDFITHLNSCADLPNERTAVKGFVSVTADIICPEPK 159
            S   A++  + +L     D +THL SC DLPNERT  +G VSVTADI+CPEPK
Sbjct:  228 SAGLAEEHLQRELETRGLDLVTHLKSCDDLPNERTPFEGIVSVTADIVCPEPK 280
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BLAST of mRNA_E-fasciculatus_F_contig1651.4395.1 vs. uniprot
Match: A0A6H5L8D9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D9_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 3.900e-9
Identity = 29/53 (54.72%), Postives = 36/53 (67.92%), Query Frame = -1 
Query:    1 SPAAAQQGGKHQLHEVNRDFITHLNSCADLPNERTAVKGFVSVTADIICPEPK 159
            S   AQ+  + +L     D +T+L SC DLPNERT  +G VSVTADI+CPEPK
Sbjct:  247 SAGLAQEQLERELEASGLDLVTYLTSCDDLPNERTPFEGMVSVTADIVCPEPK 299
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BLAST of mRNA_E-fasciculatus_F_contig1651.4395.1 vs. uniprot
Match: A0A6H5L380_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L380_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 6.440e-8
Identity = 40/97 (41.24%), Postives = 57/97 (58.76%), Query Frame = -1 
Query:    1 MMTTVITPSQQGCRSRSQPLTLLTLAQDLL-CLVVAILLATSPAA---AQQGGKHQLHEVNRDFITHLNSCADLPNERTAVKGFVSVTADIICPEPK 279
            MMTT I   ++GC     P  L+T+A++LL  LVV ++L TS AA    Q GG     E   +  T+++SC DL  +RT V+G V++  +IIC E K
Sbjct:    1 MMTTAIPSPRRGCH----PPGLVTVAKNLLRLLVVLVVLITSAAADTPGQDGG-----EPTAEVATYIHSCDDLVMDRTVVRGSVALMGNIICAETK 88
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BLAST of mRNA_E-fasciculatus_F_contig1651.4395.1 vs. uniprot
Match: A0A6H5L206_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L206_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 2.570e-7
Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = -1 
Query:    1 AQQGGKHQLHEVNRDFITHLNSCADLPNERTAVKGFVSVTADIICPEPK 147
            AQ+  + +      D +T L SC DLP ERT V+G VSVTADI+CPEPK
Sbjct:  196 AQEKLQRESEASGLDLVTFLKSCDDLPYERTPVEGIVSVTADIVCPEPK 244
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1651.4395.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LLS3_ECTSI3.690e-1158.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LLQ5_ECTSI4.450e-1056.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JJ01_9PHAE6.260e-1056.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLQ0_ECTSI2.100e-959.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LLQ3_ECTSI2.100e-954.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L8D9_9PHAE3.900e-954.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L380_9PHAE6.440e-841.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L206_9PHAE2.570e-755.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1651contigE-fasciculatus_F_contig1651:13179..13540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size363
Cds size360
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928121.0914407-CDS-E-fasciculatus_F_contig1651:13178..135381622928121.0914407-CDS-E-fasciculatus_F_contig1651:13178..13538Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1651 13179..13538 +
1695995826.5701215-CDS-E-fasciculatus_F_contig1651:13178..135381695995826.5701215-CDS-E-fasciculatus_F_contig1651:13178..13538Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1651 13179..13538 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1651.4395.1prot_E-fasciculatus_F_contig1651.4395.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1651 13179..13538 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1651.4395.1

>prot_E-fasciculatus_F_contig1651.4395.1 ID=prot_E-fasciculatus_F_contig1651.4395.1|Name=mRNA_E-fasciculatus_F_contig1651.4395.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=120bp
LGLRAYYVCRNGHEPFDSSPLVREVSARVEVRDEVPVDLMKLVFSSLLRS
GRRGGEENGHNQAQKILGEGEEGKRLAPRAASLLGRRDDRGHHAAVLLLF
LSLTALREKGKRGVCRSGEE
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mRNA from alignment at E-fasciculatus_F_contig1651:13179..13540+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1651.4395.1 ID=mRNA_E-fasciculatus_F_contig1651.4395.1|Name=mRNA_E-fasciculatus_F_contig1651.4395.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=362bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1651:13179..13540+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTTGGGCTCAGGGCATATTATGTCTGCCGTAACGGACACGAACCCTTTGA
CAGCAGTCCGCTCGTTCGGGAGGTCAGCGCACGAGTTGAGGTGCGTGATG
AAGTCCCTGTTGACCTCATGAAGCTGGTGTTTTCCTCCCTGCTGCGCAGC
GGCAGGAGAGGTGGCGAGGAGAATGGCCACAACCAGGCACAGAAGATCCT
GGGCGAGGGTGAGGAGGGTAAGAGGCTGGCTCCGAGAGCGGCATCCCTGC
TGGGAAGGCGTGATGACCGTGGTCATCATGCCGCGGTGTTGCTGCTCTTC
CTGTCTCTAACTGCTCTCCGTGAGAAGGGCAAAAGAGGTGTGTGCCGCTC
GGGAGAAGAGGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1651:13179..13540+

>mRNA_E-fasciculatus_F_contig1651.4395.1 ID=mRNA_E-fasciculatus_F_contig1651.4395.1|Name=mRNA_E-fasciculatus_F_contig1651.4395.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=720bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1651:13179..13540+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTTGGGCTCAGGGCATATTATGTCTGCCGTAACGGACACGAACCCTTTGA
CAGCAGTCCGCTCGTTCGGGAGGTCAGCGCACGAGTTGAGGTGCGTGATG
AAGTCCCTGTTGACCTCATGAAGCTGGTGTTTTCCTCCCTGCTGCGCAGC
GGCAGGAGAGGTGGCGAGGAGAATGGCCACAACCAGGCACAGAAGATCCT
GGGCGAGGGTGAGGAGGGTAAGAGGCTGGCTCCGAGAGCGGCATCCCTGC
TGGGAAGGCGTGATGACCGTGGTCATCATGCCGCGGTGTTGCTGCTCTTC
CTGTCTCTAACTGCTCTCCGTGAGAAGGGCAAAAGAGGTGTGTGCCGCTC
GGGAGAAGAGCTTGGGCTCAGGGCATATTATGTCTGCCGTAACGGACACG
AACCCTTTGACAGCAGTCCGCTCGTTCGGGAGGTCAGCGCACGAGTTGAG
GTGCGTGATGAAGTCCCTGTTGACCTCATGAAGCTGGTGTTTTCCTCCCT
GCTGCGCAGCGGCAGGAGAGGTGGCGAGGAGAATGGCCACAACCAGGCAC
AGAAGATCCTGGGCGAGGGTGAGGAGGGTAAGAGGCTGGCTCCGAGAGCG
GCATCCCTGCTGGGAAGGCGTGATGACCGTGGTCATCATGCCGCGGTGTT
GCTGCTCTTCCTGTCTCTAACTGCTCTCCGTGAGAAGGGCAAAAGAGGTG
TGTGCCGCTCGGGAGAAGAG
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