mRNA_E-fasciculatus_F_contig16506.4394.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16506.4394.1
Unique NamemRNA_E-fasciculatus_F_contig16506.4394.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig16506.4394.1 vs. uniprot
Match: D7FSF6_ECTSI (Diphthine--ammonia ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSF6_ECTSI)

HSP 1 Score: 214 bits (546), Expect = 1.830e-67
Identity = 102/107 (95.33%), Postives = 105/107 (98.13%), Query Frame = 1
Query:    1 RHCPFGHLEVNPEWRPAGSVPKTVMLAQHRKQRKSKLTVGEGWKAFSDDGGGERTVLFWSGGKDSFLTLRALQKRKREERGSERITLLTTFDGKTGKIPFQDTKVRE 321
            RHCPFGHLEVNPEWR AGSVPKTVMLAQHRKQRKSKLTVGEGWKAF+DDGGGERTVLFWSGGKDSFLTLRALQKRKREERGSERITLLTTFDGKTGKIPFQDTK+ +
Sbjct:   59 RHCPFGHLEVNPEWRLAGSVPKTVMLAQHRKQRKSKLTVGEGWKAFTDDGGGERTVLFWSGGKDSFLTLRALQKRKREERGSERITLLTTFDGKTGKIPFQDTKITD 165          
BLAST of mRNA_E-fasciculatus_F_contig16506.4394.1 vs. uniprot
Match: A0A835YXG3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXG3_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 3.260e-16
Identity = 47/108 (43.52%), Postives = 60/108 (55.56%), Query Frame = 1
Query:    1 RHCPFGHLEV-NPEWRPAGSVPKTVMLAQHRKQRKSKLTVGEGWKAFSDDGGGERTVLFWSGGKDSFLTLRALQKRKREERGSERITLLTTFDGKTGKIPFQDTKVRE 321
            RHCPF H  V +P  R  G   KTV+L                    S  GGG   VLFWSGGKDSFLTLRALQ  +R++ G+  + L+TT D  +G + FQ+T +R+
Sbjct:   51 RHCPFLHQNVEDPALRKNGPT-KTVLLNDGSDASXXXXXXXXXXXXXSARGGGPLNVLFWSGGKDSFLTLRALQAEQRDDPGAPEVMLITTCDAVSGTVAFQNTNIRD 157          
BLAST of mRNA_E-fasciculatus_F_contig16506.4394.1 vs. uniprot
Match: V9F9V3_PHYPR (Diphthine--ammonia ligase n=10 Tax=Phytophthora TaxID=4783 RepID=V9F9V3_PHYPR)

HSP 1 Score: 68.6 bits (166), Expect = 3.030e-11
Identity = 42/110 (38.18%), Postives = 57/110 (51.82%), Query Frame = 1
Query:    1 RHCPFGHLEVNPEWRPAGSVPKTVMLAQHRKQRK-------SKLTVGEGWKAFSDDGGGERTVLFWSGGKDSFLTLRALQKR-KREERGSERITLLTTFDGKTGKIPFQD 306
            RHCP+GH  V    R   ++  TV L   R+ R         ++   EG+     +G  E  V+FWSGGKDSFL L AL +    E++   R+ LLTT D KT  +P Q+
Sbjct:  430 RHCPYGHANVKDPSRRKNTLTGTVYLQPRRRSRGFAKDSPGGQMLWPEGFNV--SEGPSELVVVFWSGGKDSFLALSALYETYAAEQKPMPRVVLLTTIDPKTNVVPIQN 537          
BLAST of mRNA_E-fasciculatus_F_contig16506.4394.1 vs. uniprot
Match: G5ADK1_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5ADK1_PHYSP)

HSP 1 Score: 68.6 bits (166), Expect = 3.180e-11
Identity = 43/110 (39.09%), Postives = 56/110 (50.91%), Query Frame = 1
Query:    1 RHCPFGHLEVNPEWRPAGSVPKTVMLAQHRKQRK-------SKLTVGEGWKAFSDDGGGERTVLFWSGGKDSFLTLRAL-QKRKREERGSERITLLTTFDGKTGKIPFQD 306
            RHCP+GH  V    R   ++   V L   R+ R         ++   EG  A SD    +  V+FWSGGKDSFL L AL +    E++   R+ LLTT D KT  +P QD
Sbjct:  414 RHCPYGHANVKDPSRRKNTLAGNVFLQPRRRSRGFAKGSPGGQMLWPEGADAGSD-AQNDLVVMFWSGGKDSFLALGALYESYAAEQKAMPRVVLLTTIDPKTNVVPIQD 522          
BLAST of mRNA_E-fasciculatus_F_contig16506.4394.1 vs. uniprot
Match: A0A329RGY9_9STRA (Diphthine--ammonia ligase n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329RGY9_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 4.120e-11
Identity = 41/108 (37.96%), Postives = 56/108 (51.85%), Query Frame = 1
Query:    1 RHCPFGHLEVNPEWRPAGSVPKTVMLAQHRKQRKSKLTVGEGWKAFSD-----DGGGERTVLFWSGGKDSFLTLRALQKR-KREERGSERITLLTTFDGKTGKIPFQD 306
            RHCP+GH  V    R   ++  TV L   R+ R        G   + +     +G  E +V+FWSGGKDSFL L AL +    E++   R+ LLTT D KT  +P Q+
Sbjct:  403 RHCPYGHANVKDPSRRTNTLAGTVFLQPRRRSRGFPKDSPGGQMLWPEGCSVSEGLNELSVVFWSGGKDSFLALSALYETYAAEQKPMPRVVLLTTIDPKTNVVPIQN 510          
BLAST of mRNA_E-fasciculatus_F_contig16506.4394.1 vs. uniprot
Match: G5AIV4_PHYSP (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5AIV4_PHYSP)

HSP 1 Score: 67.4 bits (163), Expect = 6.180e-11
Identity = 41/109 (37.61%), Postives = 54/109 (49.54%), Query Frame = 1
Query:    1 RHCPFGHLEVNPEWRPAGSVPKTVMLAQHRKQRKSKLTVGEGWKAFSD------DGGGERTVLFWSGGKDSFLTLRALQKRKR-EERGSERITLLTTFDGKTGKIPFQD 306
            RHCP+GH  V    R   ++   V L   R+ R        G K + +      D   +  V+FWSGGKDSFL L AL +    E++   R+ LLTT D KT  +P QD
Sbjct:  150 RHCPYGHANVKDPSRRKNALAGNVFLQPRRRSRGFAKGSPGGQKLWPEGADAGSDAQNDLVVMFWSGGKDSFLALGALYESYAVEQKPMPRVVLLTTIDPKTNVVPIQD 258          
BLAST of mRNA_E-fasciculatus_F_contig16506.4394.1 vs. uniprot
Match: G5AIH5_PHYSP (Uncharacterized protein n=2 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5AIH5_PHYSP)

HSP 1 Score: 67.0 bits (162), Expect = 9.340e-11
Identity = 40/109 (36.70%), Postives = 54/109 (49.54%), Query Frame = 1
Query:    1 RHCPFGHLEVNPEWRPAGSVPKTVMLAQHRKQRKSKLTVGEGWKAFSD------DGGGERTVLFWSGGKDSFLTLRALQKRKR-EERGSERITLLTTFDGKTGKIPFQD 306
            RHCP+GH  V    R   ++   + L   R+ R        G K + +      D   +  V+FWSGGKDSFL L AL +    E++   R+ LLTT D KT  +P QD
Sbjct:  252 RHCPYGHANVKDPSRRKNTLAGNIFLQPRRRSRGFAKGSPGGQKLWPEGADAGSDAQNDLVVMFWSGGKDSFLALGALYESYAVEQKPMPRVVLLTTIDPKTNVVPIQD 360          
BLAST of mRNA_E-fasciculatus_F_contig16506.4394.1 vs. uniprot
Match: H3H427_PHYRM (Diphthine--ammonia ligase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H427_PHYRM)

HSP 1 Score: 67.0 bits (162), Expect = 1.050e-10
Identity = 41/110 (37.27%), Postives = 55/110 (50.00%), Query Frame = 1
Query:    1 RHCPFGHLEVNPEWRPAGSVPKTVMLAQHRKQRK-------SKLTVGEGWKAFSDDGGGERTVLFWSGGKDSFLTLRALQKR-KREERGSERITLLTTFDGKTGKIPFQD 306
            RHCP+GH  V    R   ++   V L   R+ R         +L   EG  A   D   +  V+FWSGGKDSFL L AL +    E++   R+ LLTT D +T  +P Q+
Sbjct:  404 RHCPYGHANVKDPARRKNTLAGNVFLQPRRRSRGVAKDAPGGRLLWPEGAAAAVADSPNDLVVVFWSGGKDSFLALSALYETYAAEQKPMPRVVLLTTIDPETNVVPIQN 513          
BLAST of mRNA_E-fasciculatus_F_contig16506.4394.1 vs. uniprot
Match: A0A6A3TC48_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3TC48_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.430e-10
Identity = 42/110 (38.18%), Postives = 56/110 (50.91%), Query Frame = 1
Query:    1 RHCPFGHLEVNPEWRPAGSVPKTVMLAQHRKQRK-------SKLTVGEGWKAFSDDGGGERTVLFWSGGKDSFLTLRAL-QKRKREERGSERITLLTTFDGKTGKIPFQD 306
            RHCP+GH  V    R    +   V L   R+ R         ++   EG +A SD    +  V+FWSGGKDSFL L AL +    E++   R+ LLTT D KT  +P Q+
Sbjct:  401 RHCPYGHANVKDPSRRKNKLAGNVFLRPRRRSRGFMKDSPGGQMLWPEGAEAGSD-AQNDLVVMFWSGGKDSFLALSALYESYAAEQKPMPRVVLLTTIDPKTNVVPIQN 509          
BLAST of mRNA_E-fasciculatus_F_contig16506.4394.1 vs. uniprot
Match: K3WTG3_GLOUD (Diphthine--ammonia ligase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WTG3_GLOUD)

HSP 1 Score: 65.5 bits (158), Expect = 3.640e-10
Identity = 47/118 (39.83%), Postives = 58/118 (49.15%), Query Frame = 1
Query:    1 RHCPFGHLEVNPEWRPAGSVPKTVMLAQHRKQRKSKLTVGEG-----WK---AFSDDGGGER--TVLFWSGGKDSFLTLRALQKR--KREERGSERITLLTTFDGKTGKIPFQDTKVR 318
            RHCP+GH  V    R    V + V L    K R++K   G       W    A S +  GER   VLFWSGGKDSFL+L  L      REE+   ++ LLTT D  T  +P Q   V+
Sbjct:  418 RHCPYGHANVKDASRRKNVVVQDVFLKPRGKARRAKSHGGAPGGSIVWPPGFAESSENQGERDLVVLFWSGGKDSFLSLSHLYASYAAREEKRMPQVVLLTTIDPGTNAVPVQRIDVQ 535          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16506.4394.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSF6_ECTSI1.830e-6795.33Diphthine--ammonia ligase n=2 Tax=Ectocarpus TaxID... [more]
A0A835YXG3_9STRA3.260e-1643.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
V9F9V3_PHYPR3.030e-1138.18Diphthine--ammonia ligase n=10 Tax=Phytophthora Ta... [more]
G5ADK1_PHYSP3.180e-1139.09Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A329RGY9_9STRA4.120e-1137.96Diphthine--ammonia ligase n=1 Tax=Phytophthora cac... [more]
G5AIV4_PHYSP6.180e-1137.61Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
G5AIH5_PHYSP9.340e-1136.70Uncharacterized protein n=2 Tax=Phytophthora sojae... [more]
H3H427_PHYRM1.050e-1037.27Diphthine--ammonia ligase n=1 Tax=Phytophthora ram... [more]
A0A6A3TC48_9STRA1.430e-1038.18Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
K3WTG3_GLOUD3.640e-1039.83Diphthine--ammonia ligase n=1 Tax=Globisporangium ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16506contigE-fasciculatus_F_contig16506:1171..2597 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score214.9
Seed ortholog evalue1.8e-53
Seed eggNOG ortholog2880.D7FSF6
EggNOG OGs2CTC6@1,2S4BH@2759
Ec32 ortholog descriptionDUF71 domain
Ec32 orthologEc-04_000660.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928121.031729-CDS-E-fasciculatus_F_contig16506:1170..12361622928121.031729-CDS-E-fasciculatus_F_contig16506:1170..1236Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16506 1171..1236 +
1695995826.5377426-CDS-E-fasciculatus_F_contig16506:1170..12361695995826.5377426-CDS-E-fasciculatus_F_contig16506:1170..1236Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16506 1171..1236 +
1622928121.047387-CDS-E-fasciculatus_F_contig16506:2342..25971622928121.047387-CDS-E-fasciculatus_F_contig16506:2342..2597Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16506 2343..2597 +
1695995826.5527203-CDS-E-fasciculatus_F_contig16506:2342..25971695995826.5527203-CDS-E-fasciculatus_F_contig16506:2342..2597Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16506 2343..2597 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16506.4394.1prot_E-fasciculatus_F_contig16506.4394.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16506 1171..2597 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16506.4394.1

>prot_E-fasciculatus_F_contig16506.4394.1 ID=prot_E-fasciculatus_F_contig16506.4394.1|Name=mRNA_E-fasciculatus_F_contig16506.4394.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=107bp
RHCPFGHLEVNPEWRPAGSVPKTVMLAQHRKQRKSKLTVGEGWKAFSDDG
GGERTVLFWSGGKDSFLTLRALQKRKREERGSERITLLTTFDGKTGKIPF
QDTKVRE
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mRNA from alignment at E-fasciculatus_F_contig16506:1171..2597+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16506.4394.1 ID=mRNA_E-fasciculatus_F_contig16506.4394.1|Name=mRNA_E-fasciculatus_F_contig16506.4394.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1427bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16506:1171..2597+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGCACTGCCCGTTTGGACACTTGGAGGTTAATCCCGAGTGGCGGCCTGC TGGCAGCGTTCCCAAGGTGAGAGAAGAGTCCGCAGTTACACTGCTGTCAA CCGTTTTGCTCTTTTTTGCCGTCGCTTTAAATCGGTGCTCACACACAACA TTTCTGCCAAGCATAGGAGCTCCAAAAATCAACATGTGTGAAAGGAAAAT AACTACTCCTAGACTTTTGTTTGGCGAAAAATAACGACGGAAAACATCGA TGGCGGGGCTGGTCGACCGGTGGTGTGATGTAAGGCGATCGCGTCATTTA TCCTTCGACGAATCCATTATTTCAGATTGCCAGGGGATGATGCTGGTGTC AGTCGCTCGCTGCGCCTGTCTCGGTTCCCGCCCCTTGGAGAGTACACGGC AGTTTACACGACAAGGCTTAGAGGTGGAACGCTGATCCACTACCCTGGGT TGGGCAAACTCCTTTGCCAGGAATAGTACATAACCAGTGCGTTGGGTAGG CATGATCGAATTGCGGCGTAACTCTCGACGCCGTGTTCGTTAAGAGGGCG AAACGGTCAAAGCGATCACATCACATTCACCACCCGGATTAGCGATCGGT TTCATGACAATGTCGTCCGCACCTAGTCTTTTCCAAACCTCTCTCGTGAA CTTCGTCGCACATCAACGTTGGAGAGCGAAAGCACCGAAAATAGACGAGG CGTACGACAGTCGACGGGCCTGCGCGTCAAGCGGCAACAATGATGCTGCA TCCCCCGCCCTCATCTCTTTATTCTCATCACGCGATGTTGGCCGCCGTCT CGGTTCTTCTTTTGCTGCCTGCCTGCCGTGTCGATTGATCGACCAATGAG GCGGGCCAGCGTACCCGCCACGAGTGTTCCACGTGCTAAAGATGATACAG CGTTGCCCCCCCTCCCCTTCTCCACGTGATTATTTGTTGCTGTCGTCACG CTTCCTTCGCTGCCTGTCTACCTGCCCTCCTGGCTTGGATGCCGTTCGGT TTATCAGCCGGGCCTGCGGGTCTAGCACACCTGCCGTCAGTCGCGCCAAC TTCAGTATGATTACGCCCCCCCCCCCCCCTTATGCCGTGGTCGTGCTTCT CTCGCTGTCTGCCTAACCCTACCTTCCTTCTTGCCTGCTTGCCTCGGATG TCGGTCGATCGATTTTCACTAGACCGTGATGCTCGCCCAGCACCGCAAGC AGAGGAAGTCTAAGCTGACCGTCGGAGAGGGCTGGAAGGCGTTTTCGGAC GACGGGGGCGGGGAGCGGACGGTGCTGTTTTGGTCGGGCGGGAAGGACTC GTTCTTGACGCTGCGGGCCCTGCAGAAGAGGAAGAGGGAGGAGCGGGGGA GCGAGCGAATAACGCTGCTGACGACTTTCGATGGCAAGACCGGAAAGATT CCTTTTCAGGACACGAAGGTGCGGGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16506:1171..2597+

>mRNA_E-fasciculatus_F_contig16506.4394.1 ID=mRNA_E-fasciculatus_F_contig16506.4394.1|Name=mRNA_E-fasciculatus_F_contig16506.4394.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=642bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16506:1171..2597+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGCACTGCCCGTTTGGACACTTGGAGGTTAATCCCGAGTGGCGGCCTGC
TGGCAGCGTTCCCAAGAGGCACTGCCCGTTTGGACACTTGGAGGTTAATC
CCGAGTGGCGGCCTGCTGGCAGCGTTCCCAAGACCGTGATGCTCGCCCAG
CACCGCAAGCAGAGGAAGTCTAAGCTGACCGTCGGAGAGGGCTGGAAGGC
GTTTTCGGACGACGGGGGCGGGGAGCGGACGGTGCTGTTTTGGTCGGGCG
GGAAGGACTCGTTCTTGACGCTGCGGGCCCTGCAGAAGAGGAAGAGGGAG
GAGCGGGGGAGCGAGCGAATAACGCTGCTGACGACTTTCGATGGCAAGAC
CGGAAAGATTCCTTTTCAGGACACGAAGGTGCGGGAGACCGTGATGCTCG
CCCAGCACCGCAAGCAGAGGAAGTCTAAGCTGACCGTCGGAGAGGGCTGG
AAGGCGTTTTCGGACGACGGGGGCGGGGAGCGGACGGTGCTGTTTTGGTC
GGGCGGGAAGGACTCGTTCTTGACGCTGCGGGCCCTGCAGAAGAGGAAGA
GGGAGGAGCGGGGGAGCGAGCGAATAACGCTGCTGACGACTTTCGATGGC
AAGACCGGAAAGATTCCTTTTCAGGACACGAAGGTGCGGGAG
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