mRNA_E-fasciculatus_F_contig16503.4393.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16503.4393.1
Unique NamemRNA_E-fasciculatus_F_contig16503.4393.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16503.4393.1 vs. uniprot
Match: D7FSD4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSD4_ECTSI)

HSP 1 Score: 289 bits (739), Expect = 2.470e-93
Identity = 147/172 (85.47%), Postives = 153/172 (88.95%), Query Frame = 1 
Query:    1 KAVQEAVPDAYVTVYLALLELYKFGGIYVDLTTFFVRPLPTDVDGFVAGGEGPGGG----RGEXXEAGGDGSDCSLPTSKDRLHRPLVMQYRAPKHPVVECVLSGYDLEVSPMNECIALSKDDGYGGINCVLEALETCTENRGLTNDLREAGVVAWHGCNSATAKSYTAPSR 504
            +AV+EAVPDAYVTVYLALLELYKFGGIYVDLTTFFVRPLP  +DGFVAGGEGPG         XX      SDCS+PTS DRLHRPLVMQYRAP+HPVVECVLS YDLEVSPMNECIALSK+DGYGGINCVLEALETCTENRGLTNDLREAGVVAWHGCNSATAKSYTAPSR
Sbjct:  232 QAVEEAVPDAYVTVYLALLELYKFGGIYVDLTTFFVRPLPAGIDGFVAGGEGPGSAGXXXXXXXXXXXXXXSDCSVPTSNDRLHRPLVMQYRAPQHPVVECVLSEYDLEVSPMNECIALSKNDGYGGINCVLEALETCTENRGLTNDLREAGVVAWHGCNSATAKSYTAPSR 403
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BLAST of mRNA_E-fasciculatus_F_contig16503.4393.1 vs. uniprot
Match: A0A6H5JIY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIY4_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 7.430e-33
Identity = 68/86 (79.07%), Postives = 73/86 (84.88%), Query Frame = 1 
Query:    1 KAVQEAVPDAYVTVYLALLELYKFGGIYVDLTTFFVRPLPTDVDGFVAGGEGPGGGRGEXXEAGGDGSDCSLPTSKDRLHRPLVMQ 258
            +AVQ+AVPDAY+TVYLALLELYK GGIYVDLTTFFVRPLPT +DGFVAGGEGPG     XX    DG DCS+PTS DRLHRPLVMQ
Sbjct:  222 QAVQDAVPDAYITVYLALLELYKSGGIYVDLTTFFVRPLPTGLDGFVAGGEGPGSAXXXXXXXX-DGRDCSVPTSNDRLHRPLVMQ 306
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16503.4393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FSD4_ECTSI2.470e-9385.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JIY4_9PHAE7.430e-3379.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16503contigE-fasciculatus_F_contig16503:253..2253 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-25_001040.1
Exons3
Model size507
Cds size507
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16503.4393.1prot_E-fasciculatus_F_contig16503.4393.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16503 253..2253 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928120.94357-CDS-E-fasciculatus_F_contig16503:252..5101622928120.94357-CDS-E-fasciculatus_F_contig16503:252..510Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16503 253..510 +
1695995826.495314-CDS-E-fasciculatus_F_contig16503:252..5101695995826.495314-CDS-E-fasciculatus_F_contig16503:252..510Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16503 253..510 +
1622928120.966675-CDS-E-fasciculatus_F_contig16503:1151..13041622928120.966675-CDS-E-fasciculatus_F_contig16503:1151..1304Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16503 1152..1304 +
1695995826.505036-CDS-E-fasciculatus_F_contig16503:1151..13041695995826.505036-CDS-E-fasciculatus_F_contig16503:1151..1304Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16503 1152..1304 +
1622928120.9916484-CDS-E-fasciculatus_F_contig16503:2157..22531622928120.9916484-CDS-E-fasciculatus_F_contig16503:2157..2253Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16503 2158..2253 +
1695995826.5169823-CDS-E-fasciculatus_F_contig16503:2157..22531695995826.5169823-CDS-E-fasciculatus_F_contig16503:2157..2253Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16503 2158..2253 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16503.4393.1

>prot_E-fasciculatus_F_contig16503.4393.1 ID=prot_E-fasciculatus_F_contig16503.4393.1|Name=mRNA_E-fasciculatus_F_contig16503.4393.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=169bp
KAVQEAVPDAYVTVYLALLELYKFGGIYVDLTTFFVRPLPTDVDGFVAGG
EGPGGGRGEGGEAGGDGSDCSLPTSKDRLHRPLVMQYRAPKHPVVECVLS
GYDLEVSPMNECIALSKDDGYGGINCVLEALETCTENRGLTNDLREAGVV
AWHGCNSATAKSYTAPSR*
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mRNA from alignment at E-fasciculatus_F_contig16503:253..2253+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16503.4393.1 ID=mRNA_E-fasciculatus_F_contig16503.4393.1|Name=mRNA_E-fasciculatus_F_contig16503.4393.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2001bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16503:253..2253+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGGCGGTGCAAGAAGCGGTTCCGGACGCATATGTCACGGTCTACCTGGC
CCTGTTGGAGCTCTACAAGTTCGGAGGCATCTACGTTGATCTGACGACGT
TCTTCGTGCGGCCGTTGCCGACTGATGTGGACGGGTTCGTGGCTGGAGGG
GAAGGGCCCGGAGGTGGCCGTGGGGAGGGCGGCGAGGCGGGGGGCGACGG
GAGTGATTGCTCTCTCCCCACTTCTAAGGACAGGCTGCACAGGCCGCTCG
TCATGCAGGTGATCTGTTTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTC
TGTCTGTCTGTCTGTCTGTCTGTGTGTCTGTCTGTCTGTTTGTCTGTCTG
TCTGTCTGTATATCTGTTTGTCTGTCTGTTTGTCTTTCTGTTTGTCTGTC
TGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTATGTATGTATGTATGTAGT
GCACCTTCACTGATGTTCTTTGTGTGACGAGCTGAATAGCTTGAGCTTGA
CATGCGACCTTACTGTGTGGGGATGCTCCGCGTACCACACGCCCCGCAAC
CCCGTACCGCGGCTTCCCGTCGATATTAATGATCACCTCACGTGATCAGC
ACCCTAACACAAGTCCAACAGAGAAACCGGTAGATAATAGGCAGCTGGAA
ACATCCGGAGGAGTCTTTGCGTACCCTCCCTCCCCTCCCATCCAACACAG
TGTGGTAACAGTATCGTGCCCCCCAACTCCCGGTGGTGGCCTGTGTCGTG
ACCGGTACGACTTGTTTACTTTGTACCCCAAACCCTCAACGGTGCCTTAC
TGCTTAGACAGCGTTCCCAACTGCCGTGACCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCCATCCATCACAGT
ACCGTGCCCCAAAGCACCCCGTGGTGGAGTGCGTCTTGTCTGGGTACGAC
CTGGAGGTGTCGCCGATGAACGAGTGCATCGCGTTGTCCAAGGACGACGG
CTACGGGGGGATAAACTGCGTCCTGGAGGCGTTGGAGACGTGCACCGAAA
ACGTGAGCTTTTACGTCTTGCGACGGTTGTGTCCGCTCGTTCAGGCCCCA
GCTTTGAACTGAAACTGGGCTGTATTAGAACATACGCGCGCGCGCGCGCA
CGTGTGTGTGTGTCTCCGCACGTTTGTCATGTCATTGGACAAGCTGGAAG
CGTGAGGCGATGCCGTGGGGGCATGGTTTTGGTAGGCGGAGTTTTTTTTT
TGCAGTATTTTGGTTGCGTCCACGCCCGGACGTCAGGGACCAGGTTCCAT
TTCGCAATCCAAGGTGTTGCGTAGGCCACGACCAGGACAACAACCAGAAA
GGACAACAACCACGACGGCTTGCATTAATTGTTGACTTGTTTTCACGCAG
CGTATACACGGCCAGGACAAAAGTTCTTGAAGGGCCTGATGATGCCCACG
ACATCGTGTGGGAGTGTTGCCTACGTTGGTTTGATTCGGCTTTGCATGCA
CGGCGGCCTCAGTAGATGCGGGTGGGCTGCCCCCACGGGGCCATCGTCTT
CTGCCGCATAACCAGGCCTTTTCGAGCCCAGACCAGGCCTTTCGAGCCAA
AACCAGGCCCTTTCGAGCTAAAACCAGGACCTTTCGAGAGAGGGTCGGCA
TGACGGGGGTGTGGCCGACGAGCCCCTTGCGTGTCCCTTGGTAGAGAATA
TAAATCACTCAAAGAAACGACCGATTGTAAGCAGTACGTGTTGTTAAGAG
GAAGCTCTTTTTCGCGGGACCCCCCCCCCCCCGCGCGCTCGTGCCCCGTA
CATATATCGCCTGCGATGCATTTTTGGTTGTGCTCTCCCTGGCTGAGCAT
TCGTTCCTCGTTCGCGTGTTTTTTTTGTTTCTTGATTTTTGTGATATTTT
CGCAGAGGGGCCTGACGAACGACCTGCGGGAAGCCGGTGTAGTGGCGTGG
CACGGGTGCAACTCCGCTACGGCGAAGTCTTACACCGCCCCTTCCCGGTG
A
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16503:253..2253+

>mRNA_E-fasciculatus_F_contig16503.4393.1 ID=mRNA_E-fasciculatus_F_contig16503.4393.1|Name=mRNA_E-fasciculatus_F_contig16503.4393.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1014bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16503:253..2253+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGGCGGTGCAAGAAGCGGTTCCGGACGCATATGTCACGGTCTACCTGGC
CCTGTTGGAGCTCTACAAGTTCGGAGGCATCTACGTTGATCTGACGACGT
TCTTCGTGCGGCCGTTGCCGACTGATGTGGACGGGTTCGTGGCTGGAGGG
GAAGGGCCCGGAGGTGGCCGTGGGGAGGGCGGCGAGGCGGGGGGCGACGG
GAGTGATTGCTCTCTCCCCACTTCTAAGGACAGGCTGCACAGGCCGCTCG
TCATGCAGAAGGCGGTGCAAGAAGCGGTTCCGGACGCATATGTCACGGTC
TACCTGGCCCTGTTGGAGCTCTACAAGTTCGGAGGCATCTACGTTGATCT
GACGACGTTCTTCGTGCGGCCGTTGCCGACTGATGTGGACGGGTTCGTGG
CTGGAGGGGAAGGGCCCGGAGGTGGCCGTGGGGAGGGCGGCGAGGCGGGG
GGCGACGGGAGTGATTGCTCTCTCCCCACTTCTAAGGACAGGCTGCACAG
GCCGCTCGTCATGCAGTACCGTGCCCCAAAGCACCCCGTGGTGGAGTGCG
TCTTGTCTGGGTACGACCTGGAGGTGTCGCCGATGAACGAGTGCATCGCG
TTGTCCAAGGACGACGGCTACGGGGGGATAAACTGCGTCCTGGAGGCGTT
GGAGACGTGCACCGAAAACTACCGTGCCCCAAAGCACCCCGTGGTGGAGT
GCGTCTTGTCTGGGTACGACCTGGAGGTGTCGCCGATGAACGAGTGCATC
GCGTTGTCCAAGGACGACGGCTACGGGGGGATAAACTGCGTCCTGGAGGC
GTTGGAGACGTGCACCGAAAACAGGGGCCTGACGAACGACCTGCGGGAAG
CCGGTGTAGTGGCGTGGCACGGGTGCAACTCCGCTACGGCGAAGTCTTAC
ACCGCCCCTTCCCGGTGAAGGGGCCTGACGAACGACCTGCGGGAAGCCGG
TGTAGTGGCGTGGCACGGGTGCAACTCCGCTACGGCGAAGTCTTACACCG
CCCCTTCCCGGTGA
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