mRNA_E-fasciculatus_F_contig16501.4392.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16501.4392.1
Unique NamemRNA_E-fasciculatus_F_contig16501.4392.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16501.4392.1 vs. uniprot
Match: D7FKB3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKB3_ECTSI)

HSP 1 Score: 221 bits (563), Expect = 6.070e-70
Identity = 106/127 (83.46%), Postives = 114/127 (89.76%), Query Frame = 1 
Query:    1 QFVCVVATTGTVEEGVWHKRRAPRMWSRQPPFHVRIVRPNPAGMLGHMLGRGKIKLATKDVTMRRTDKRTGRSVEITQPMTVVDRMDDKLPKNVQEMMAAQQEGSEYTGTRRDTKGRWGPSNIQEVR 381
            QFVCVVAT  TVEEG+WHKRRAPRMWSRQPPFHVRIVRPNP GMLGHMLG GKIK   KDVTMR+TDKRTGRS+EITQPMTV+ RMD KLPKNVQEMM AQ+EG EYTGT R +KGRWGPSNI+EV+
Sbjct:  117 QFVCVVATRATVEEGIWHKRRAPRMWSRQPPFHVRIVRPNPVGMLGHMLGTGKIKFVQKDVTMRKTDKRTGRSIEITQPMTVLKRMDGKLPKNVQEMMEAQEEGREYTGTSRPSKGRWGPSNIEEVK 243
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16501.4392.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKB3_ECTSI6.070e-7083.46Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16501contigE-fasciculatus_F_contig16501:113..1567 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-05_005560.1
Exons3
Model size381
Cds size381
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16501.4392.1prot_E-fasciculatus_F_contig16501.4392.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16501 113..1567 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928120.8636122-CDS-E-fasciculatus_F_contig16501:112..2321622928120.8636122-CDS-E-fasciculatus_F_contig16501:112..232Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16501 113..232 -
1695995826.4673123-CDS-E-fasciculatus_F_contig16501:112..2321695995826.4673123-CDS-E-fasciculatus_F_contig16501:112..232Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16501 113..232 -
1622928120.88082-CDS-E-fasciculatus_F_contig16501:795..8791622928120.88082-CDS-E-fasciculatus_F_contig16501:795..879Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16501 796..879 -
1695995826.4780793-CDS-E-fasciculatus_F_contig16501:795..8791695995826.4780793-CDS-E-fasciculatus_F_contig16501:795..879Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16501 796..879 -
1622928120.8959246-CDS-E-fasciculatus_F_contig16501:1390..15671622928120.8959246-CDS-E-fasciculatus_F_contig16501:1390..1567Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16501 1391..1567 -
1695995826.486256-CDS-E-fasciculatus_F_contig16501:1390..15671695995826.486256-CDS-E-fasciculatus_F_contig16501:1390..1567Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16501 1391..1567 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16501.4392.1

>prot_E-fasciculatus_F_contig16501.4392.1 ID=prot_E-fasciculatus_F_contig16501.4392.1|Name=mRNA_E-fasciculatus_F_contig16501.4392.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=127bp
QFVCVVATTGTVEEGVWHKRRAPRMWSRQPPFHVRIVRPNPAGMLGHMLG
RGKIKLATKDVTMRRTDKRTGRSVEITQPMTVVDRMDDKLPKNVQEMMAA
QQEGSEYTGTRRDTKGRWGPSNIQEVR
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mRNA from alignment at E-fasciculatus_F_contig16501:113..1567-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16501.4392.1 ID=mRNA_E-fasciculatus_F_contig16501.4392.1|Name=mRNA_E-fasciculatus_F_contig16501.4392.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1455bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16501:113..1567- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGTTTGTGTGCGTGGTGGCAACCACGGGCACGGTGGAGGAGGGGGTCTG
GCACAAACGGCGGGCCCCCAGAATGTGGTCCAGGCAGCCGCCGTTCCACG
TCCGTATCGTAAGGCCTAACCCGGCGGGGATGCTGGGTCACATGCTGGGG
AGGGGAAAGATCAAGCTCGCGACGAAGGTGCTTCTTCTCCTTAGCGCCTG
CTCCGTAAATGCTTGCGTAGAGTGTGTGTGTGTTTTTTGAGGCATGCCCT
TTGCTGTTCTGTTCGCCATCGCCAGGTTTGGAGGAAAAACGTTAACTCGT
TGTGTGTGTGCGTCTCTTTGTTATTTGCATCGACCGCGCTAGCCAGTTGG
CCATCGAACATGCTCACTTCAGTCTCCAAGAGTTCACGCGTGTGCGTGTG
CACGCGCGTGGTCTGGTCTGTGAATTTTGGTGCACGCTCGGCGTGGCCTT
ACCCTGCTTGTGCCGGGGCACACCGTGAGCATCTGTCTACACCCCCCCAA
TCGAGACCAGACCAAAACTTTCTTGTTGTAGCACTCCAGCATGATGCGAG
TTTTTTTTTTTTTTTTTTGTGTCGTTTTGACGCGAAGCTTGGTTGGCACG
GGCGAGCGCTGTAGTTTTTTTCCATCGGTGTGGTTCATGTCGGGCCGCGC
GTTTTTCTTTTCTTTGTGTGTGCATTTGTGCGATGCAGGACGTTACGATG
AGGAGGACGGACAAAAGAACCGGCCGCTCCGTCGAGATTACCCAGCCCAT
GACGGTCGTGGATCGCATGGATGTAAGTCGTGATGGACCAAACGCCCGCT
GTTCTTGGGGGAGCTTGTGCGTCGAATTGCTATTGCAGCGCAACCCCTGC
AACGTTTATATGCCTTTTGAAAGGGCAAGGAGAAAAAAATGACACATGCC
AACGTGTGACTCGGGAAACCAGTGTGATTGTGCGTGCATGAAAGTGGCAA
TGCTGTGTCATCGTTAGATTAGAAAGTCCATGTCTCGCGCTGAGTGTGCG
ATTGCCGTGATGGTGCTGGAGACGTAGATGTAAGCCCGTTTCCAACTGTT
TTCTTGTGCATGTTTTCCATCGAAACTGCGTGCGAACAACATCGCAGCAC
ACGTTCGCACCACGTTTTTCGCTAACTTGGATGCCTTTTGCAAGCGACGT
CGCTGTGCGGCAAGGTGCACATAGGTGAATTGTTTCGATTGACAACGACC
TCCGCGGCAGCAACAAGGATGTTCGCGGTACCCTGAGACAAGAGCAGTCC
CCATCATCACCACTGCCAACAACAACAACAGCAGCAGCAGCAGCAACAAC
TTATAACAACATCATATGACAACATTACCCCACAGGACAAACTGCCCAAG
AATGTCCAGGAAATGATGGCGGCCCAGCAGGAGGGTAGCGAGTACACAGG
CACCCGCCGCGACACGAAGGGGCGCTGGGGGCCTTCGAACATCCAAGAGG
TGAGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16501:113..1567-

>mRNA_E-fasciculatus_F_contig16501.4392.1 ID=mRNA_E-fasciculatus_F_contig16501.4392.1|Name=mRNA_E-fasciculatus_F_contig16501.4392.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=762bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16501:113..1567- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGTTTGTGTGCGTGGTGGCAACCACGGGCACGGTGGAGGAGGGGGTCTG
GCACAAACGGCGGGCCCCCAGAATGTGGTCCAGGCAGCCGCCGTTCCACG
TCCGTATCGTAAGGCCTAACCCGGCGGGGATGCTGGGTCACATGCTGGGG
AGGGGAAAGATCAAGCTCGCGACGAAGCAGTTTGTGTGCGTGGTGGCAAC
CACGGGCACGGTGGAGGAGGGGGTCTGGCACAAACGGCGGGCCCCCAGAA
TGTGGTCCAGGCAGCCGCCGTTCCACGTCCGTATCGTAAGGCCTAACCCG
GCGGGGATGCTGGGTCACATGCTGGGGAGGGGAAAGATCAAGCTCGCGAC
GAAGGACGTTACGATGAGGAGGACGGACAAAAGAACCGGCCGCTCCGTCG
AGATTACCCAGCCCATGACGGTCGTGGATCGCATGGATGACGTTACGATG
AGGAGGACGGACAAAAGAACCGGCCGCTCCGTCGAGATTACCCAGCCCAT
GACGGTCGTGGATCGCATGGATGACAAACTGCCCAAGAATGTCCAGGAAA
TGATGGCGGCCCAGCAGGAGGGTAGCGAGTACACAGGCACCCGCCGCGAC
ACGAAGGGGCGCTGGGGGCCTTCGAACATCCAAGAGGTGAGAGACAAACT
GCCCAAGAATGTCCAGGAAATGATGGCGGCCCAGCAGGAGGGTAGCGAGT
ACACAGGCACCCGCCGCGACACGAAGGGGCGCTGGGGGCCTTCGAACATC
CAAGAGGTGAGA
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