mRNA_E-fasciculatus_F_contig1650.4390.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1650.4390.1 vs. uniprot
Match: D7G5A5_ECTSI (Flagellar associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5A5_ECTSI) HSP 1 Score: 497 bits (1280), Expect = 6.430e-158 Identity = 258/273 (94.51%), Postives = 266/273 (97.44%), Query Frame = 3
Query: 33 MGMKQRKARLGQMAAMCRLASKGTDEDIAELRGILDHIAAEKDRDAGLFSPRASVACSRQAARTYGEFVCTLEGSASKGKGEVIMLTRDSDFGRISGFLQEAFNLTGSVLITLPEDRLFDEMEQLLLSTKHLQGLIDDFVLRQPTRRVLKVMKATFPITRCLVGGSHGDLDADEATALALNQLLELVQVPANLETVDRAGRLSELLVAVGAVVGHSLSSVQVAVACQVVWKLATLTDMRRRMLEHGLLNKLWALAESIARTVETPEHRKARQK 851
MGMKQRKARLGQMAA+CRLASKGTD+DIAELRGILDHIAAEK+RDAGLFSPRASVACSRQAARTYGEFVCTLEGSASKG+GEVIMLTRDSDFGRISGFLQEAFNLTG VLITLPEDRLFDEMEQL+LSTKHLQGLIDDFVLRQP RRVLKVMKATFPITRCLVGGSHGDLDADEA +ALNQLLELVQVPANLETVDRAGRLSELLVAVG+V+GHS SSVQVAVACQVVWKLAT TDMRRRMLEHGL NKLWALAESIARTVETPEHRKARQK
Sbjct: 1 MGMKQRKARLGQMAALCRLASKGTDQDIAELRGILDHIAAEKERDAGLFSPRASVACSRQAARTYGEFVCTLEGSASKGQGEVIMLTRDSDFGRISGFLQEAFNLTGGVLITLPEDRLFDEMEQLVLSTKHLQGLIDDFVLRQPPRRVLKVMKATFPITRCLVGGSHGDLDADEAIVVALNQLLELVQVPANLETVDRAGRLSELLVAVGSVIGHSSSSVQVAVACQVVWKLATSTDMRRRMLEHGLQNKLWALAESIARTVETPEHRKARQK 273
BLAST of mRNA_E-fasciculatus_F_contig1650.4390.1 vs. uniprot
Match: A0A6H5LAC6_9PHAE (Vacuolar protein 8 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAC6_9PHAE) HSP 1 Score: 161 bits (408), Expect = 7.090e-40 Identity = 89/94 (94.68%), Postives = 90/94 (95.74%), Query Frame = 2
Query: 866 RGADGSRGGEGGSLLPQEVTGDNEDEAHTSEGEEGGGVAVVLEAGQELDEVAAKCVGAISLMLRSQEAADSLAGSEGYHNGLEILLELATAGQR 1147
RGAD SRGGEG LL QEVTGDNEDEAHTSEGEEGGGVAVVLEAGQELDEVAAKC+GAISLMLRSQEAADSLAGSEGYHNGLEILLELATAGQR
Sbjct: 123 RGADDSRGGEGVPLLLQEVTGDNEDEAHTSEGEEGGGVAVVLEAGQELDEVAAKCLGAISLMLRSQEAADSLAGSEGYHNGLEILLELATAGQR 216 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1650.4390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1650.4390.1 >prot_E-fasciculatus_F_contig1650.4390.1 ID=prot_E-fasciculatus_F_contig1650.4390.1|Name=mRNA_E-fasciculatus_F_contig1650.4390.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=297bp MGMKQRKARLGQMAAMCRLASKGTDEDIAELRGILDHIAAEKDRDAGLFSback to top mRNA from alignment at E-fasciculatus_F_contig1650:10171..13332- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1650.4390.1 ID=mRNA_E-fasciculatus_F_contig1650.4390.1|Name=mRNA_E-fasciculatus_F_contig1650.4390.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3162bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1650:10171..13332- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1650:10171..13332- >mRNA_E-fasciculatus_F_contig1650.4390.1 ID=mRNA_E-fasciculatus_F_contig1650.4390.1|Name=mRNA_E-fasciculatus_F_contig1650.4390.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1782bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1650:10171..13332- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |