mRNA_E-fasciculatus_F_contig1650.4389.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1650.4389.1 vs. uniprot
Match: D7G5A5_ECTSI (Flagellar associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5A5_ECTSI) HSP 1 Score: 1130 bits (2923), Expect = 0.000e+0 Identity = 625/736 (84.92%), Postives = 651/736 (88.45%), Query Frame = 2
Query: 1841 HIMLMSPREEVGERHLPTDFSCGVWNLDKSK--MEALPGEMLALLKRTNSLELQEHAARTLCTLLSANENLRRKAFEDGFLDKLQRLLMRRLGSAQLDSTIACSIMYLCDIGAQNKSSDNXXXXXXXXXXXXXXXXXXXN---GDPAENAGLAEDGSKPKRKXXXXXXXXXXXXXXXEADRALWSEKQLTSLVWALGHTNQDVLTYTAWTVLDVKEGVLAAVWLLACDADNTVRLAMNAGLQLLVGVLNFPSSACYVPLKSLAVGTLCTLCHTEPDVATLAMHLSLASALLQAACGSFLAASLSLGARSRNRLQANGGVEALCRLVRTTNTKEPLKIRSLHALLNLSTETGCQPSICRWALQPLVELTVSSTPPQSEFASSILCNCAENPYCRAIMFEGQISRGSKQVTASRAHQSLEESIRASLWAGRLANGGTPAARIVREQFLAWVQGVKGGDFSMLKERCAGADSGKNTGKSVTKVEGDVDATRAHGREGQEKTPEHVRGAERTPTTPPIKTGHAAMVQVRQDFRQPVTSLWQTASERAATAPTRAASGGGGIVDSTNTATARRGLSHRRPQSQAGVSRTQGKGTSAAAAPTSATTNARDDQLGNARPHTGGTGAVPSAGDGRKSNSRGPASRESEPTSSPGISPGPVCVSGGREADAQQQQRGRRTPIPLRSSHRVGPVGSLAGSTPFPAGEYRWRPFVSDCYTKPNPLPAWRRKQHETLPDSTGAAPSKG 4033
++ SPREE +R++PTDFS GVWNLD S+ MEALPGEMLALLKRTNSLELQEHAARTLCTL+SANENLRRKAFEDGFLDKLQRLLMRRLGSAQ DSTIACSIMYLCDIGAQ+KSSDN GD ENAGLAE SKPKR+XXXXXXXXXXXXXXX D ALWSEKQLTSLVWALGHTNQDVLTYTAWT+LDVKEGVLAA+WLLACD DNTVRLAMN GLQLLVG+LNFPSSACYVPLKSLAVGTLC +CHTEPDVATLAMHLSLASALLQA CGSFLAASLSLGARSR+RLQ NGGVEALCRLVR T+TKEPLK+RSLHALLN STETGCQPSICRWALQPLVELTVSS PPQSEFASSILCNCAENP CRAIMFEGQISRGSKQVTASRA +SLEESIRASLWAGRL NGG+P ARIVREQFLAWVQGVKGGDFS KERCAGADS +TGKSVTKV+GD DATRAHGREGQE+ PEH RGAER PT PPIKTGHAAMVQVRQDFRQPVTSLWQTASERAATAPTRAAS GGGIVDSTNTATARRG SHRRPQSQAG SRT G TSA PT ATTNARD QLGNARP TGG GAV SAG+GRKSNSRG A RES+ TS+P ISP PVCVSGGREAD Q+Q+R RRTPIPLRSSHRVGPVGSL GSTPFPAGEYRWRPFVSDCYTKPNPLPAWRRKQH TLPDST AAPSKG
Sbjct: 611 YVHESSPREEGEKRYIPTDFSRGVWNLDTSEAMMEALPGEMLALLKRTNSLELQEHAARTLCTLMSANENLRRKAFEDGFLDKLQRLLMRRLGSAQFDSTIACSIMYLCDIGAQSKSSDNSNTKTENGNNDNKTVSAKQENSIGDVVENAGLAEGSSKPKRQXXXXXXXXXXXXXXXX-DGALWSEKQLTSLVWALGHTNQDVLTYTAWTILDVKEGVLAAIWLLACDTDNTVRLAMNGGLQLLVGILNFPSSACYVPLKSLAVGTLCNMCHTEPDVATLAMHLSLASALLQA-CGSFLAASLSLGARSRSRLQDNGGVEALCRLVRATSTKEPLKVRSLHALLNFSTETGCQPSICRWALQPLVELTVSSAPPQSEFASSILCNCAENPCCRAIMFEGQISRGSKQVTASRADRSLEESIRASLWAGRLTNGGSPTARIVREQFLAWVQGVKGGDFSTPKERCAGADSDSDTGKSVTKVDGDADATRAHGREGQERVPEHERGAERKPTIPPIKTGHAAMVQVRQDFRQPVTSLWQTASERAATAPTRAASRGGGIVDSTNTATARRGPSHRRPQSQAGASRTHGMVTSAP--PTGATTNARD-QLGNARPQTGGRGAVSSAGEGRKSNSRGQALRESDLTSTPAISPSPVCVSGGREADGQKQRR-RRTPIPLRSSHRVGPVGSL-GSTPFPAGEYRWRPFVSDCYTKPNPLPAWRRKQHGTLPDSTDAAPSKG 1339
BLAST of mRNA_E-fasciculatus_F_contig1650.4389.1 vs. uniprot
Match: A0A6H5LAC6_9PHAE (Vacuolar protein 8 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAC6_9PHAE) HSP 1 Score: 959 bits (2478), Expect = 0.000e+0 Identity = 561/821 (68.33%), Postives = 586/821 (71.38%), Query Frame = 2
Query: 1994 QEHAARTLCTLLSANENLRRKAFEDGFLDKLQRLLMRRLGSAQLDSTIACSIMYLCDIGAQNKSSDNXXXXXXXXXXXXXXXXXXXN---GDPAENAGLAEDGSKPKRKXXXXXXXXXXXXXXXEADRALWSEKQLTSLVWALGHTNQDVLTYTAWTV-------------------------------LDVKEGVLAAVWLLACDADNTVRLAMNAGLQLLVGVLNFPSSACYVPLKSLAVGTLCTLCHTEPDVATLAMHLSLASALLQA---------------------------------------------------------------ACGSFLAASLSLGARSRNRLQANGGVEALCRLVRTTNTKEPLKIRSLHALLNLSTETGCQPSICRWALQPLVELTVSSTPPQSEFASSILCNCAENPYCRAIMFEGQISRGSKQVTASRAHQSLEESIRASLWAGRLANGGTPAARIVREQFLAWVQG--------------------------------------------VKGGDFSMLKERCAGADSGKNTGKSVTKVEGDVDATRAHGREGQEKTPEHVRGAERTPTTPPIKTGHAAMVQVRQDFRQPVTSLWQTASERAATAPTRAASGGGGIVDSTNTATARRGLSHRRPQSQAGVSRTQGKGTSAAAAPTSATTNARDDQLGNARPHTGGTGAVPSAGDGRKSNSRGPASRESEPTSSPGISPGPVCVSGGREADAQQQQRGRRTPIPLRSSHRVGPVGSLAGSTPFPAGEYRWRPFVSDCYTKPNPLPAWRRKQHETLPDSTGAAPSKG 4033
+EHAARTLCTLLSANENLRRKAFEDGFLDKLQRLLMRRLGSAQ DSTIACSIMYLCDIGAQ+KSSDN GD E+AGLAE SKPK + XXXXXXXX AD A+WSEKQLTSLVWALGHTNQDVLTYTAWT+ LDVKEGVLAA+WLLACD DNTVRLAMN GLQLLVG+LNFPSSACYVPLKSLAVGTLC LCHTEPDVA LAMHLS+ASALL+A ACGSFLAASLSL ARSRNRL NGG+EALCRLVR T+TKEPL++RSLHALLNLSTETGCQPSICRWALQPLVELT SS PPQSEFASSIL NCAENP CRAIMFEGQISRGSKQVTASRA +SLEESIRASL AGRL NGGTPAARIVRE+FLAWVQG VKGG FS KERCAGADS +TGKSV KVEGDVDAT AHGREGQE+ PEH RGA+R PTTPPI+TGHAAMVQVRQDFRQPVTSLWQTASERAATAPTRAA GGGIVDSTNTATA RG SHRRPQSQAG SRTQ K S DQLGNARPHTGG GAV AG+GRKSNSRG ASRESEPTS+P ISP PVCVSGGREAD Q+Q+R RTPIPL+SSHRVGPVGSL GSTPFPAGEYRWRPFVSDCYT PNPLPAWRRKQH TLPDSTGAAPSKG
Sbjct: 412 EEHAARTLCTLLSANENLRRKAFEDGFLDKLQRLLMRRLGSAQFDSTIACSIMYLCDIGAQSKSSDNSNTKTEKGNNLNKTASAKQEDSIGDAVEHAGLAEGSSKPKGQRRATRSAXXXXXXXX-ADGAVWSEKQLTSLVWALGHTNQDVLTYTAWTIWLLARRRKNRVSLGRLWALDGLVHVLRSNARLDVKEGVLAAIWLLACDTDNTVRLAMNGGLQLLVGILNFPSSACYVPLKSLAVGTLCKLCHTEPDVAMLAMHLSIASALLRAVYDCTSTVYLKVLSAGLMFTLCRNPEHKKNRADYVKQFATEGGPFVLEDVCAGFLASGTSELQACGSFLAASLSLRARSRNRLHDNGGMEALCRLVRATSTKEPLRVRSLHALLNLSTETGCQPSICRWALQPLVELTGSSAPPQSEFASSILSNCAENPCCRAIMFEGQISRGSKQVTASRADRSLEESIRASLLAGRLTNGGTPAARIVRERFLAWVQGYVPSGGHKGSLSLPSRRCLWCSRLQPRRIVVVVAPRPLYFNLQGVKGGGFSTPKERCAGADSDSDTGKSVAKVEGDVDATPAHGREGQERAPEHERGAKRKPTTPPIRTGHAAMVQVRQDFRQPVTSLWQTASERAATAPTRAAPRGGGIVDSTNTATALRGPSHRRPQSQAGASRTQPKAMSTR------------DQLGNARPHTGGRGAVSRAGEGRKSNSRGQASRESEPTSTPAISPAPVCVSGGREADGQKQRR-IRTPIPLQSSHRVGPVGSL-GSTPFPAGEYRWRPFVSDCYTAPNPLPAWRRKQHGTLPDSTGAAPSKG 1217
BLAST of mRNA_E-fasciculatus_F_contig1650.4389.1 vs. uniprot
Match: A0A836CII1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CII1_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 6.190e-6 Identity = 41/108 (37.96%), Postives = 51/108 (47.22%), Query Frame = 2
Query: 2459 LDVKEGVLAAVWLLACDADNTVRLAMN-----------------------AGLQLLVGVLNFPSSACYVPLKSLAVGTLCTLCHTEPDVATLAMHLSLASALLQAACG 2713
L +KE AA+WLLACD DN VRLA+ GL+ L+G+L FP Y LK+LA G L + DV LA+ L L ALL + G
Sbjct: 797 LPLKEAAAAALWLLACDDDNAVRLALKDLLCDVPLTRRPPIRPIPAHARQGGLEALIGILGFPDEKAYAHLKTLAAGALLRVTALS-DVRVLALQLDLGGALLGSIAG 903 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1650.4389.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1650.4389.1 >prot_E-fasciculatus_F_contig1650.4389.1 ID=prot_E-fasciculatus_F_contig1650.4389.1|Name=mRNA_E-fasciculatus_F_contig1650.4389.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=730bp MLMSPREEVGERHLPTDFSCGVWNLDKSKMEALPGEMLALLKRTNSLELQback to top mRNA from alignment at E-fasciculatus_F_contig1650:218..13332- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1650.4389.1 ID=mRNA_E-fasciculatus_F_contig1650.4389.1|Name=mRNA_E-fasciculatus_F_contig1650.4389.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=13115bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1650:218..13332- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1650:218..13332- >mRNA_E-fasciculatus_F_contig1650.4389.1 ID=mRNA_E-fasciculatus_F_contig1650.4389.1|Name=mRNA_E-fasciculatus_F_contig1650.4389.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=4380bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1650:218..13332- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |