mRNA_E-fasciculatus_F_contig16496.4385.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16496.4385.1
Unique NamemRNA_E-fasciculatus_F_contig16496.4385.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16496.4385.1 vs. uniprot
Match: A0A6H5K0G0_9PHAE (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0G0_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 1.900e-41
Identity = 106/163 (65.03%), Postives = 113/163 (69.33%), Query Frame = -3 
Query:   88 GGGSISXXXXXXXXAGVVLPSFLHVIQRLVRDPDAIGAVLVDGTKAVPARYLCPAAAAVGDSGGSTACVRKTRELEMSAARRPAAADFGVDGS----DAQVGEQVVEERPGEAATAGGDGTGADGARDSGADAVGGAGGSGQTXXXVAVPDGPRTPXVDGRVG 564
            G GSIS        A  +LPSFLHVI+RLVRDP AIGAVLVDGTK VP RYLCPA+  VG  GGS+ACVRKTREL++S ARRPAAADFGV G     DA  G QV EERPG AA         DGARDSGAD VGGAGGSGQ    VA  DGP+   VDG VG
Sbjct:  545 GSGSISDDGGKEAGA-TILPSFLHVIERLVRDPGAIGAVLVDGTKVVPCRYLCPAS--VG-GGGSSACVRKTRELKLSVARRPAAADFGVYGGVVEGDAGAGGQVEEERPGAAAXXXXXXXXGDGARDSGADDVGGAGGSGQAGEDVAA-DGPKIVDVDGSVG 702
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16496.4385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K0G0_9PHAE1.900e-4165.03Nucleotid_trans domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16496contigE-fasciculatus_F_contig16496:426..991 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size568
Cds size480
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928119.366522-CDS-E-fasciculatus_F_contig16496:425..9051622928119.366522-CDS-E-fasciculatus_F_contig16496:425..905Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16496 426..905 +
1695995825.7928364-CDS-E-fasciculatus_F_contig16496:425..9051695995825.7928364-CDS-E-fasciculatus_F_contig16496:425..905Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16496 426..905 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928119.3820589-UTR-E-fasciculatus_F_contig16496:905..9911622928119.3820589-UTR-E-fasciculatus_F_contig16496:905..991Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16496 906..991 +
1695995825.8145618-UTR-E-fasciculatus_F_contig16496:905..9911695995825.8145618-UTR-E-fasciculatus_F_contig16496:905..991Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16496 906..991 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16496.4385.1prot_E-fasciculatus_F_contig16496.4385.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16496 426..905 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16496.4385.1

>prot_E-fasciculatus_F_contig16496.4385.1 ID=prot_E-fasciculatus_F_contig16496.4385.1|Name=mRNA_E-fasciculatus_F_contig16496.4385.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=160bp
VVVATPSAVAASDAAATAAAALTNVAAASANPTVYTGGPRAVRDGNIPAR
LSASARTANSIGTAITGTVGPGAVPACCCRLARPLFHNLFPYLSVAAVDT
KIGSGRAAGGAHLQLPRLSNTGGATTAVPNGGGGGAEISGRNRLGAVHKD
SADRVGVPD*
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mRNA from alignment at E-fasciculatus_F_contig16496:426..991+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16496.4385.1 ID=mRNA_E-fasciculatus_F_contig16496.4385.1|Name=mRNA_E-fasciculatus_F_contig16496.4385.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=566bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16496:426..991+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGGTCGTCGCCACCCCTTCCGCTGTGGCTGCTTCTGACGCTGCTGCTAC
CGCTGCTGCTGCTCTGACTAACGTCGCCGCCGCCTCCGCCAACCCTACCG
TCTACACCGGGGGTCCTAGGGCCGTCCGGGACGGCAACATCCCCGCCCGT
CTGTCCGCTTCCGCCCGCACCGCCAACAGCATCGGCACCGCTATCACGGG
CACCGTCGGCCCCGGTGCCGTCCCCGCCTGCTGTTGCCGCCTCGCCCGGC
CTCTCTTCCACAACCTGTTCCCCTACTTGAGCGTCGCTGCCGTCGACACC
AAAATCGGCAGCGGCCGGGCGGCGGGCGGCGCTCATCTCCAGCTCCCTCG
TCTTTCGAACACAGGCGGTGCTACCACCGCTGTCCCCAACGGCGGCGGCG
GCGGGGCAGAGATATCTGGCAGGAACCGCCTTGGTGCCGTCCACAAGGAC
AGCGCCGATCGCGTCGGGGTCCCGGACTAGCCGCTGGATGACGTGCAGGA
AGGACGGGAGCACCACGCCCGCCTCCTCCTCACCGCCGCCGCCGCTGCTG
ATGCTACCGCCGCCCA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16496:426..991+

>mRNA_E-fasciculatus_F_contig16496.4385.1 ID=mRNA_E-fasciculatus_F_contig16496.4385.1|Name=mRNA_E-fasciculatus_F_contig16496.4385.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=960bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16496:426..991+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGGTCGTCGCCACCCCTTCCGCTGTGGCTGCTTCTGACGCTGCTGCTAC
CGCTGCTGCTGCTCTGACTAACGTCGCCGCCGCCTCCGCCAACCCTACCG
TCTACACCGGGGGTCCTAGGGCCGTCCGGGACGGCAACATCCCCGCCCGT
CTGTCCGCTTCCGCCCGCACCGCCAACAGCATCGGCACCGCTATCACGGG
CACCGTCGGCCCCGGTGCCGTCCCCGCCTGCTGTTGCCGCCTCGCCCGGC
CTCTCTTCCACAACCTGTTCCCCTACTTGAGCGTCGCTGCCGTCGACACC
AAAATCGGCAGCGGCCGGGCGGCGGGCGGCGCTCATCTCCAGCTCCCTCG
TCTTTCGAACACAGGCGGTGCTACCACCGCTGTCCCCAACGGCGGCGGCG
GCGGGGCAGAGATATCTGGCAGGAACCGCCTTGGTGCCGTCCACAAGGAC
AGCGCCGATCGCGTCGGGGTCCCGGACTAGGTGGTCGTCGCCACCCCTTC
CGCTGTGGCTGCTTCTGACGCTGCTGCTACCGCTGCTGCTGCTCTGACTA
ACGTCGCCGCCGCCTCCGCCAACCCTACCGTCTACACCGGGGGTCCTAGG
GCCGTCCGGGACGGCAACATCCCCGCCCGTCTGTCCGCTTCCGCCCGCAC
CGCCAACAGCATCGGCACCGCTATCACGGGCACCGTCGGCCCCGGTGCCG
TCCCCGCCTGCTGTTGCCGCCTCGCCCGGCCTCTCTTCCACAACCTGTTC
CCCTACTTGAGCGTCGCTGCCGTCGACACCAAAATCGGCAGCGGCCGGGC
GGCGGGCGGCGCTCATCTCCAGCTCCCTCGTCTTTCGAACACAGGCGGTG
CTACCACCGCTGTCCCCAACGGCGGCGGCGGCGGGGCAGAGATATCTGGC
AGGAACCGCCTTGGTGCCGTCCACAAGGACAGCGCCGATCGCGTCGGGGT
CCCGGACTAG
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