mRNA_E-fasciculatus_F_contig16493.4384.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig16493.4384.1 vs. uniprot
Match: A0A6H5JC31_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC31_9PHAE) HSP 1 Score: 331 bits (848), Expect = 2.940e-104 Identity = 294/378 (77.78%), Postives = 301/378 (79.63%), Query Frame = 1
Query: 1 REGGIGGGGKMVFREGGGDGGEA-GLA---------RVAAVDQAEVVSATASSFCSPKSTSGSARKKTLTRMRSSLQVASESGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVFAAEDLMLARDRXXXXXXXXXXXXXXVGATPVGSSGGAGRRLSPARVRGKTLTSSAVGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLGIFRGPGGRQMAWGFHDRFFLVLAESMYHTSFAPFLTSVLSFPTGTVGFLLSFMGMVAALTNAFLVGALTKRFGERPLLASSLVVLAGGWVMWSTISGSLPAIVASLTLAGVGGNVFQTVNKASVAQHAPPELVGTVMGMSGEPKIF 1104
R G + GGKM FREGGG A GL RVAAVDQAEVV+ATASSFCSPK+TSGSARKK L R+RSSLQVASESGRT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VFAAEDLMLARDR XXXXXX RLSPARVRGK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLGIFRGPGGRQMAWGFHDRFFLVLAESMYHTSFAPFLT+VLSFPTGTVGFLLSFMGMVAALTNAFLVGALTKRFGERPLLASSLVVLA GW +WSTISGSLPAIV SLTLAGVGGNVFQTVNKASVAQHAPPELVGTVMGMS + F
Sbjct: 251 RTGAVSNGGKM-FREGGGXXXXARGLXXXXXXXXXXRVAAVDQAEVVAATASSFCSPKATSGSARKKPLARIRSSLQVASESGRTTAPASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEKG-VFAAEDLMLARDRMAAVASPGXXXXXXXXXXXXXXXXXX-XRLSPARVRGKXXXXXXX---------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLGIFRGPGGRQMAWGFHDRFFLVLAESMYHTSFAPFLTTVLSFPTGTVGFLLSFMGMVAALTNAFLVGALTKRFGERPLLASSLVVLAAGWALWSTISGSLPAIVVSLTLAGVGGNVFQTVNKASVAQHAPPELVGTVMGMSAALETF 616
BLAST of mRNA_E-fasciculatus_F_contig16493.4384.1 vs. uniprot
Match: D8LJ30_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ30_ECTSI) HSP 1 Score: 250 bits (639), Expect = 1.170e-79 Identity = 129/132 (97.73%), Postives = 129/132 (97.73%), Query Frame = 1
Query: 694 MAWGFHDRFFLVLAESMYHTSFAPFLTSVLSFPTGTVGFLLSFMGMVAALTNAFLVGALTKRFGERPLLASSLVVLAGGWVMWSTISGSLPAIVASLTLAGVGGNVFQTVNKASVAQHAPPELVGTVMGMSG 1089
MAW FHDRFFLVLAESMYHTSFAPFLTSVLSFPTGTVGFLLSFMGMVAALTNAFLVGALTKRFGERPLLASSLVVLAGGWVMWSTISGSLPAIV SLTLAGVGGNVFQTVNK SVAQHAPPELVGTVMGMSG
Sbjct: 1 MAWVFHDRFFLVLAESMYHTSFAPFLTSVLSFPTGTVGFLLSFMGMVAALTNAFLVGALTKRFGERPLLASSLVVLAGGWVMWSTISGSLPAIVVSLTLAGVGGNVFQTVNKDSVAQHAPPELVGTVMGMSG 132
BLAST of mRNA_E-fasciculatus_F_contig16493.4384.1 vs. uniprot
Match: A0A359E9K4_9CHLR (MFS transporter n=2 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A359E9K4_9CHLR) HSP 1 Score: 70.1 bits (170), Expect = 1.500e-9 Identity = 39/128 (30.47%), Postives = 68/128 (53.12%), Query Frame = 1
Query: 709 HDRFFLVLAESMYHTSFAPFLTSVLSFPTGTVGFLLSFMGMVAALTNAFLVGALTKRFGERPLLASSLVVLAGGWVMWSTISGSLPAIVASLTLAGVGGNVFQTVNKASVAQHAPPELVGTVMGMSGE 1092
H RFF LA + + T F + LS GF+L+++G++AA +G LTKRF ER L+ SS +++ G + W+ + ++P ++ L G V TV +++ + PE +G +G++
Sbjct: 208 HIRFFFGLAFATFQTVFPLYAQYQLSLDVRQTGFILTYVGVLAAFIQGGAIGMLTKRFSERSLIFSSTIIMTGALLAWA-FTPNVPVLLIVLLPLAYAGGVLGTVINSALTKAVYPEEIGGTLGLAAS 334
BLAST of mRNA_E-fasciculatus_F_contig16493.4384.1 vs. uniprot
Match: A0A7X8CZ46_9SPIR (TCR/Tet family MFS transporter n=1 Tax=Treponema sp. TaxID=166 RepID=A0A7X8CZ46_9SPIR) HSP 1 Score: 63.2 bits (152), Expect = 2.720e-7 Identity = 35/118 (29.66%), Postives = 64/118 (54.24%), Query Frame = 1
Query: 739 SMYHTSFAPFLTSVLSFPTGTVGFLLSFMGMVAALTNAFLVGALTKRFGERPLLASSLVVLAGGWVMWSTISGSLPAIVASLTLAGVGGNVFQTVNKASVAQHAPPELVGTVMGMSGE 1092
+++ ++F+ F L T G LL+++G++ A LVGAL K+F ER +L S+L++ A ++ S L + L ++ G + T+N++ +++ APPE G G+S
Sbjct: 227 TLFESTFSLFAAEHLRADTAARGLLLTYVGLIIAFVQGGLVGALAKKFDERRILLSALIIAAAALAVYGFTSNILATALVLLPMSLASG-IAGTLNRSLLSKSAPPETTGGTFGLSAS 343
BLAST of mRNA_E-fasciculatus_F_contig16493.4384.1 vs. uniprot
Match: A0A537RFY2_9PROT (MFS transporter n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537RFY2_9PROT) HSP 1 Score: 58.9 bits (141), Expect = 6.330e-6 Identity = 35/123 (28.46%), Postives = 70/123 (56.91%), Query Frame = 1
Query: 718 FFLVLAESMYHTSFAPFLTSVLSFPTGTVGFLLSFMGMVAALTNAFLVGALTKRFGERPLLASSLVVLAGGWVMWSTISGSLPAIVASLTLAGVGGNVFQTVNKASVAQHAPPELVGTVMGMS 1086
F ++LA + ++FA + + G VG++ S++G+++A+ L+GALT+RFGE LL L ++ G +M ++ ++P + +++ +G + Q + +++ A E G V+GMS
Sbjct: 216 FLVILAFAGMESTFALWAVEQFGWGPGQVGYVFSYVGVLSAILQGGLIGALTRRFGEERLLFCGLALIGIGLLMMP-LARTVPLLAPAISALALGMGLTQPSLNSLISRRAGREEQGEVLGMS 337
BLAST of mRNA_E-fasciculatus_F_contig16493.4384.1 vs. uniprot
Match: A0A0P6X3G1_9CHLR (MFS transporter n=1 Tax=Levilinea saccharolytica TaxID=229921 RepID=A0A0P6X3G1_9CHLR) HSP 1 Score: 57.8 bits (138), Expect = 1.560e-5 Identity = 36/132 (27.27%), Postives = 75/132 (56.82%), Query Frame = 1
Query: 709 HDRFFLVLAESMYHTSFAPFLTSVLSFPTGTVGFLLSFMGMVAALTNAFLVGALTKRFGERPLLASSLVVLAGGWVMWSTISGSLPAIVASLTLAGVGGNVFQTVNKASVAQHAPPELVGTVMGMSGEPKIF 1104
H R F +A + + T F+ + S+ + + GF+L+++G+++ +T A L+GALT+RF E L+ ++L ++A + + ++ L LA + G V TV ++S+++ + VG ++G++ + F
Sbjct: 234 HVRLFYGMAFATFQTIFSLYAQSI-GLSSRSTGFVLAYVGILSVITQAGLIGALTRRFRENWLMINALWLMAFALLAXXFTAQLWMLLIVMLPLA-LSGGVLNTVLQSSISKSVGRDEVGGILGIASSLEAF 363
BLAST of mRNA_E-fasciculatus_F_contig16493.4384.1 vs. uniprot
Match: A0A831UKK8_9BACT (MFS transporter n=2 Tax=unclassified Armatimonadetes TaxID=1042316 RepID=A0A831UKK8_9BACT) HSP 1 Score: 56.6 bits (135), Expect = 3.480e-5 Identity = 39/125 (31.20%), Postives = 62/125 (49.60%), Query Frame = 1
Query: 718 FFLVLAESMYHTSFAPFLTSVLSFPTGTVGFLLSFMGMVAALTNAFLVGALTKRFGERPLLASSLVVLAGGWVMWSTISGSLPAIVASLTLAGVGGNVFQTVNKASVAQHAPPELVGTVMGMSGE 1092
F + L S+Y TSF FL F VG++L+F+G+VAA A LVGA+ +R GER + + G V ++++ S+ LA GG + + ++Q + G + G+SG
Sbjct: 227 FLMWLGFSVYQTSFPLFLNKRFEFTPAQVGYVLTFVGIVAAAAQAVLVGAVVRRLGERAAFLLGMGLNVAGLV-GASLTHSVWLFYGLAGLAAAGGALALPTFTSILSQSVQSDEQGRLQGVSGS 350 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16493.4384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig16493.4384.1 >prot_E-fasciculatus_F_contig16493.4384.1 ID=prot_E-fasciculatus_F_contig16493.4384.1|Name=mRNA_E-fasciculatus_F_contig16493.4384.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=368bp MVFREGGGDGGEAGLARVAAVDQAEVVSATASSFCSPKSTSGSARKKTLTback to top mRNA from alignment at E-fasciculatus_F_contig16493:541..2503- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig16493.4384.1 ID=mRNA_E-fasciculatus_F_contig16493.4384.1|Name=mRNA_E-fasciculatus_F_contig16493.4384.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1963bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16493:541..2503- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16493:541..2503- >mRNA_E-fasciculatus_F_contig16493.4384.1 ID=mRNA_E-fasciculatus_F_contig16493.4384.1|Name=mRNA_E-fasciculatus_F_contig16493.4384.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2208bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16493:541..2503- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |