mRNA_E-fasciculatus_F_contig1649.4382.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1649.4382.1
Unique NamemRNA_E-fasciculatus_F_contig1649.4382.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig1649.4382.1 vs. uniprot
Match: D7FU53_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU53_ECTSI)

HSP 1 Score: 196 bits (499), Expect = 4.540e-55
Identity = 114/172 (66.28%), Postives = 131/172 (76.16%), Query Frame = 2
Query:    8 YQAQASIVEPEGTMDVPVFGHPEASVVGDVGSVSRPTGTNKDGFSRDGKMPPPKEGVRDTAVRPTTGTGPSGYYSRGGRGGVGLLALGFVSAINLANVESKMLLVQLPSGFRCIWYNLPHLVQFVVLFMMVVLLYGVNRAFDKADEAMSSRLSCATTAFLHERRLYHHAAPR 523
            YQ+++S    +GTM VPV G PE S+V D GS SRPT  ++D  SR GK+PPPK+GVR+ A RPTT  G SG  SRGG   VGLLAL F   I L NVESKML V+LPSGFRCIW +LPH+VQFV +FMM+VLLYGVNRAFDKAD+AMS+RLS AT A LHERR  HH APR
Sbjct:   14 YQSESS----QGTMCVPVIG-PEVSMVCDAGSASRPTRLSRDESSRGGKIPPPKDGVREIASRPTTAAGSSG--SRGGGRVVGLLALAFALPIKLCNVESKML-VELPSGFRCIWNDLPHIVQFVAIFMMLVLLYGVNRAFDKADDAMSTRLSRATAALLHERR--HHHAPR 175          
BLAST of mRNA_E-fasciculatus_F_contig1649.4382.1 vs. uniprot
Match: A0A6H5JQL3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQL3_9PHAE)

HSP 1 Score: 184 bits (468), Expect = 1.980e-50
Identity = 111/202 (54.95%), Postives = 130/202 (64.36%), Query Frame = 2
Query:   47 MDVPVFGHPEASVVGDVGSVSRPTGTNKDGFSRDGKMPPPKEGVRDTAVRPTTGTGPSGYYSRGGRGGVGLLALGFVSAINLANVESKMLLVQLPSGFRCIWYNLPHLVQFVVLFMMVVLLYGVNRAFDKADEAMSSRLSCATTAFLHERRLYHHAAPRGVF*TAT*AKAASSTASTRCIISA*QKGPCSGFCWKEGTTPSP 652
            M V V   PE S+V D GSVSRPTGT++DG S  GK+PPPK+GVR+ A+RPTT  G SG         VGLL L   SAI L NVES ML V+LPSGFRCIW NLPHLVQ   + +MVVL+YGV+R FD+AD+AMS+RLS AT AFLHERR   H  PR V+      K+A+STA         +      F   EGTT  P
Sbjct:    1 MGVAVVVRPEVSMVCDAGSVSRPTGTSRDGSSWGGKIPPPKDGVREIALRPTTAAGSSGSRV------VGLLILALASAIKLGNVESSML-VELPSGFRCIWNNLPHLVQIAAILLMVVLMYGVSRVFDRADDAMSARLSSATAAFLHERR--QHYPPRVVYTATREKKSAASTAVRDAAFQHKRGHHAQRFGTSEGTTTLP 193          
BLAST of mRNA_E-fasciculatus_F_contig1649.4382.1 vs. uniprot
Match: A0A6H5JJU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJU8_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 4.080e-34
Identity = 81/159 (50.94%), Postives = 93/159 (58.49%), Query Frame = 2
Query:   47 MDVPVFGHPEASVVGDVGSVSRPTGTNKDGFSRDGKMPPPKEGVRDTAVRPTTGTGPSGYYSRGGRGGVGLLALGFVSAINLANVESKMLLVQLPSGFRCIWYNLPHLVQFVVLFMMVVLLYGVNRAFDKADEAMSSRLSCATTAFLHERRLYHHAAPR 523
            M VPV    E S+V D GSVS PT   KDG SRDGK+PPPKEGVR  A+RPTT                                         P+G RCIW +LPH+VQFV +F+M+VLLYGV R FDKAD+AMS+RLSCAT AFLHERR +H   PR
Sbjct:    1 MCVPVIVS-EVSMVCDAGSVSHPTRLTKDGSSRDGKIPPPKEGVRVIALRPTT-----------------------------------------PAGSRCIWNDLPHIVQFVAIFLMLVLLYGVKRVFDKADKAMSTRLSCATAAFLHERRHHHAPLPR 117          
BLAST of mRNA_E-fasciculatus_F_contig1649.4382.1 vs. uniprot
Match: D7G4F6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F6_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 3.650e-21
Identity = 51/83 (61.45%), Postives = 63/83 (75.90%), Query Frame = 2
Query:  275 VSAINLANVESKMLLVQLPSGFRCIWYNLPHLVQFVVLFMMVVLLYGVNRAFDKADEAMSSRLSCATTAFLHERRLYHHAAPR 523
            VSAI +  VE K L ++LPSG RC+W +LPH +QF +LF+M+ +LYGVNR FDKADEAM SRL+CAT   L ERR  HH AP+
Sbjct:   18 VSAIQVDLVEGKRL-IELPSGVRCMWNDLPHGLQFAILFLMLGILYGVNRLFDKADEAMYSRLTCATAELLRERR--HHDAPQ 97          
BLAST of mRNA_E-fasciculatus_F_contig1649.4382.1 vs. uniprot
Match: A0A6H5L6K1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6K1_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 3.680e-20
Identity = 57/111 (51.35%), Postives = 74/111 (66.67%), Query Frame = 2
Query:  191 VRPTTGTGPSGYYSRGGRGGVGLLALGFVSAINLANVESKMLLVQLPSGFRCIWYNLPHLVQFVVLFMMVVLLYGVNRAFDKADEAMSSRLSCATTAFLHERRLYHHAAPR 523
            VR +TG       S GGR  +    L  VSA+++  VE K L ++ P  FRCIW +LPH +QF +LF+M+ +LYGVNR FDKAD+AM +RL+CAT   L+ERR  HH APR
Sbjct:   48 VRSSTGR------SLGGRRAI----LALVSAVHVDLVEGKWL-IEFPPRFRCIWNDLPHGLQFAILFLMLGVLYGVNRLFDKADQAMHTRLTCATARLLNERR--HHHAPR 145          
BLAST of mRNA_E-fasciculatus_F_contig1649.4382.1 vs. uniprot
Match: A0A6H5JJ82_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ82_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 3.820e-19
Identity = 53/114 (46.49%), Postives = 73/114 (64.04%), Query Frame = 2
Query:  167 KEGVRDTAVRPTTGTGPSGYYSRGGRGGVGLLALGFVSAINLANVESKMLLVQLPSGFRCIWYNLPHLVQFVVLFMMVVLLYGVNRAFDKADEAMSSRLSCATTAFLHERRLYH 508
            K+    T VR + G G          G   +LAL  +S  ++  VE K L ++ PSGFRC+W +LPH +QF +L +M+ +LYGVNR FDKADEA+ +RL+CAT   L+ERRL+H
Sbjct:   40 KKAALHTLVRSSAGLG----------GRRAMLAL--ISVAHVDVVEGKWL-IEFPSGFRCMWNDLPHGLQFAILLLMLGILYGVNRLFDKADEAIYTRLTCATAGLLNERRLHH 140          
BLAST of mRNA_E-fasciculatus_F_contig1649.4382.1 vs. uniprot
Match: D7G1C9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1C9_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 4.260e-17
Identity = 40/69 (57.97%), Postives = 55/69 (79.71%), Query Frame = 2
Query:  317 LVQLPSGFRCIWYNLPHLVQFVVLFMMVVLLYGVNRAFDKADEAMSSRLSCATTAFLHERRLYHHAAPR 523
            L++ P GFRCIW +LPH +QF +L +M+ +LYGVNR FDKADEA+ +RL+CAT+  L+E+R +H  APR
Sbjct:   43 LIEFPPGFRCIWNDLPHGLQFTILLLMLGILYGVNRLFDKADEAVYTRLACATSGLLNEKRNHH--APR 109          
BLAST of mRNA_E-fasciculatus_F_contig1649.4382.1 vs. uniprot
Match: A0A6H5JMJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMJ2_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.370e-16
Identity = 41/69 (59.42%), Postives = 53/69 (76.81%), Query Frame = 2
Query:  317 LVQLPSGFRCIWYNLPHLVQFVVLFMMVVLLYGVNRAFDKADEAMSSRLSCATTAFLHERRLYHHAAPR 523
            L++ PSG RC+W  LPH +QF +LF+M+ +LYGVNR FDKADEAM +R++CAT   L ERR  HH AP+
Sbjct:  135 LIEFPSGVRCMWNELPHGLQFAILFLMLGILYGVNRLFDKADEAMYTRVTCATAGLLRERR--HHHAPQ 201          
BLAST of mRNA_E-fasciculatus_F_contig1649.4382.1 vs. uniprot
Match: A0A6H5L9J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9J2_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 4.420e-14
Identity = 40/86 (46.51%), Postives = 59/86 (68.60%), Query Frame = 2
Query:  260 LALGFVSAINLANVESKMLLVQLPSGFRCIWYNLPHLVQFVVLFMMVVLLYGVNRAFDKADEAMSSRLSCATTAFL----HERRLY 505
            + L  ++A+N   V+   LLV LPSGF+C WYNL H  QF +LF+MV ++Y +NR F++ D+ M +RLSCAT A++    H R++Y
Sbjct:  126 ILLATIAALNAGLVDGS-LLVDLPSGFKCAWYNLEHPAQFAILFLMVGVVYFINRLFNEVDKVMYARLSCATEAWMDEIRHSRQVY 210          
BLAST of mRNA_E-fasciculatus_F_contig1649.4382.1 vs. uniprot
Match: D7FU60_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU60_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 2.290e-13
Identity = 40/78 (51.28%), Postives = 54/78 (69.23%), Query Frame = 2
Query:  275 VSAINLANVESKMLLVQLPSGFRCIWYNLPHLVQFVVLFMMVVLLYGVNRAFDKADEAMSSRLSCATTAFLHERRLYH 508
            +SA+ +   ESK  LV+  SGF+C+WY+LPH VQF VL MM  L +G+NR F K D+A  +RLS A TA++ E+R  H
Sbjct:  144 ISAMVVGVAESK--LVEFQSGFKCMWYDLPHPVQFAVLLMMPALFFGINRIFGKLDKAAYARLSRAVTAWMDEKRQVH 219          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1649.4382.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7FU53_ECTSI4.540e-5566.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JQL3_9PHAE1.980e-5054.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJU8_9PHAE4.080e-3450.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4F6_ECTSI3.650e-2161.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6K1_9PHAE3.680e-2051.35Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JJ82_9PHAE3.820e-1946.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1C9_ECTSI4.260e-1757.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JMJ2_9PHAE1.370e-1659.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L9J2_9PHAE4.420e-1446.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FU60_ECTSI2.290e-1351.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1649contigE-fasciculatus_F_contig1649:12424..16048 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size2279
Cds size489
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1649.4382.1prot_E-fasciculatus_F_contig1649.4382.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1649 12470..14304 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928119.119967-UTR-E-fasciculatus_F_contig1649:12423..124691622928119.119967-UTR-E-fasciculatus_F_contig1649:12423..12469Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1649 12424..12469 +
1695995825.6684852-UTR-E-fasciculatus_F_contig1649:12423..124691695995825.6684852-UTR-E-fasciculatus_F_contig1649:12423..12469Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1649 12424..12469 +
1622928119.1854641-UTR-E-fasciculatus_F_contig1649:14304..160481622928119.1854641-UTR-E-fasciculatus_F_contig1649:14304..16048Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1649 14305..16048 +
1695995825.7167292-UTR-E-fasciculatus_F_contig1649:14304..160481695995825.7167292-UTR-E-fasciculatus_F_contig1649:14304..16048Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1649 14305..16048 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928119.1308746-CDS-E-fasciculatus_F_contig1649:12469..126421622928119.1308746-CDS-E-fasciculatus_F_contig1649:12469..12642Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1649 12470..12642 +
1695995825.6834908-CDS-E-fasciculatus_F_contig1649:12469..126421695995825.6834908-CDS-E-fasciculatus_F_contig1649:12469..12642Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1649 12470..12642 +
1622928119.1427057-CDS-E-fasciculatus_F_contig1649:13022..131141622928119.1427057-CDS-E-fasciculatus_F_contig1649:13022..13114Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1649 13023..13114 +
1695995825.6919234-CDS-E-fasciculatus_F_contig1649:13022..131141695995825.6919234-CDS-E-fasciculatus_F_contig1649:13022..13114Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1649 13023..13114 +
1622928119.1532779-CDS-E-fasciculatus_F_contig1649:13600..136831622928119.1532779-CDS-E-fasciculatus_F_contig1649:13600..13683Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1649 13601..13683 +
1695995825.700227-CDS-E-fasciculatus_F_contig1649:13600..136831695995825.700227-CDS-E-fasciculatus_F_contig1649:13600..13683Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1649 13601..13683 +
1622928119.1656168-CDS-E-fasciculatus_F_contig1649:14163..143041622928119.1656168-CDS-E-fasciculatus_F_contig1649:14163..14304Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1649 14164..14304 +
1695995825.7082894-CDS-E-fasciculatus_F_contig1649:14163..143041695995825.7082894-CDS-E-fasciculatus_F_contig1649:14163..14304Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1649 14164..14304 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1649.4382.1

>prot_E-fasciculatus_F_contig1649.4382.1 ID=prot_E-fasciculatus_F_contig1649.4382.1|Name=mRNA_E-fasciculatus_F_contig1649.4382.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=163bp
MDVPVFGHPEASVVGDVGSVSRPTGTNKDGFSRDGKMPPPKEGVRDTAVR
PTTGTGPSGYYSRGGRGGVGLLALGFVSAINLANVESKMLLVQLPSGFRC
IWYNLPHLVQFVVLFMMVVLLYGVNRAFDKADEAMSSRLSCATTAFLHER
RLYHHAAPRGVF*
back to top

mRNA from alignment at E-fasciculatus_F_contig1649:12424..16048+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1649.4382.1 ID=mRNA_E-fasciculatus_F_contig1649.4382.1|Name=mRNA_E-fasciculatus_F_contig1649.4382.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3625bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1649:12424..16048+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCCGACCTATCAGGCGCAAGCAAGCATCGTCGAGCCAGAGGGAACAATGG ACGTGCCAGTATTTGGTCATCCTGAAGCGTCCGTGGTCGGCGACGTTGGG TCCGTTTCCCGTCCCACCGGAACGAACAAAGACGGGTTCTCGCGGGACGG AAAAATGCCGCCACCAAAGGAGGGGGTCCGGGATACAGCCGTACGTCCAA CCACGGGGACTGGACCAAGGTAAGGAGGAAGAGGAGGTGTTGCCGCTTCT TTGAAACTCCCCATTAATTGTCGAAATGACGCATACATTTCGTCGGAGAG CTACAATGTACAGCGTTTGCGGCATTTTATTTTATATTATGTCCCTTCAT TTTACCTCTGGAACAGTCAAAGGGTGGTGGCTAAACAAGAAATACTGGCC ACATGAATGTTGAGACCGTTCCACAGAAGTAGTCTGCCACAGCTGTGATC TCCGACGCGCTTCTGGGAAATGGAGTAGTTCCACGCGTCCCTTTCGTTTC GATTGACCCCGCCTTCTGAACTGGAGAAGCTTCATGGGCCCCTTTCGTTT GACTCGACCCTGCCTGCCGTTCCTACGCTTGTTTGTGTCTTGCCACCAGC GGTTACTATTCTCGTGGGGGTCGTGGTGGCGTTGGTCTGCTAGCCTTGGG ATTTGTCTCAGCCATCAACCTGGCCAACGTGGAGAGCAAAAGTGAGTCTC CTAGTAGTCTCAAGCCTTCATGTACGACATGCACAGCAAAAGAACGTGTG TTTTTTTTCATTGCATTCACAGCAGCGTCCCACCGATCTCACAGCCTAGA CAACTAATTTCCTGTGCCCGTCGTTTTCGGACTTCTAATGAGTATTGAGC CTAAAGAATATTTATTTCCTGTGTGGGTCATTGTCCTAAATAAATCTCTG CCTGTAGCCTTCGCAGGGTTTTAGTACAGTATACAGTATTCAGGGAATAT GTTGGATAAAGCATACAATACAATAAGAGAAGATGGGTTAGGGTTAGGGT ATACAGTATTCAGGGAATATGTTGGATAAAGCATACAATACAATCAGAGA AGATGGGTTAGGGTTAGGATCTCTGCTGAATGTCCTCCACCTTCGTTGGC GATGCCTGACTGAGAATTTACCGGTTCCCGTTTCACCCGTGGCGTTTCTG CTGCTGCTTTTGATCCGCGCCGTGCAGTGCTGCTGGTTCAGCTCCCGTCG GGGTTCAGGTGTATTTGGTACAACCTGCCGCACCTTGTTCAGTTCGTGGT CTTATTTATGGTGAGTGCTGTCGAGGTCCATTGAGTGTTTGCTGACAACG AAACCGCGGCATCGTGCTTTTGTCTTTTTTTTTTTCCCCGTTACTATGGT GTGAGACCACGGGTTGGAGCTCCTACAACCGGCAGAAATGCTGTGAGCAC TGGTTAATGTCACCACAAAAATACAAAAAACATGAACGAAAGGTCACGGT TCCACTGCTGCTGTGTTGTGTGTATCATATCATCCACCACGTCTTCTGTT GCTGCGCGCATCCATTCTTGTTGCTGCCCCGCTGGTCCGCCCGTGTTGCG AAGAAATATTCAACGCTATATTGAACGATCGTGCTTTTTAAGTGTCGTGT TTGGTGCGAGCGTGGGCTCAGGAACAGCGTTTTTTGCCCTCGACCGACCA TGCCGCTTCCTCTCGAAATCCTCACCTCGCCGCCACTGCTTGCGACATTG CCTGGAACCTTCTTCACTTTTTTCTTCCCGAATCACGCAGATGGTGGTTC TACTGTACGGGGTTAACCGAGCCTTCGACAAGGCAGATGAGGCTATGTCC TCTCGCTTATCCTGCGCCACAACGGCGTTTCTCCACGAGAGAAGGCTCTA CCACCACGCTGCTCCCCGCGGAGTTTTCTAGACGGCAACGTGAGCTAAAG CTGCGTCGTCTACAGCATCAACGCGATGCATCATTTCTGCATGACAGAAG GGACCGTGCTCAGGGTTCTGCTGGAAAGAAGGCACCACGCCCTCCCCCCT CCACCCCTCTGAGGTTTCTAAACCACCACGATAATCAGAGCTGCGTCGCC CACGGCAGCAGTACTCGTCTGACAACGCAGGAGAGGCCCCACGTGGGTTT GCCCTTGGCCCAGCCCTCCACCACCTCCTTGCGCGTCTCCAGAGAGAATG AAAGTTTCAGTTGAGGAACTTGGAGTTCCCCAGTAGTTTCATTGCCAAGC GGCCTTGTGGCCATAATCACCCCTTGGGAGTAAGCGTCGTCTTTTCTTGT GGTTTTGCCCCTCAAAAACCAAAATATAAACAAGTTGAAAGCCCGTAAGT TTTTGACGTCATTGGCATCCATCCGTAGAAAGCGAGCGGATGGCATTGTA AACGGAATGTTTTTCTCGCCCACCACCTGCAGCGGCATCGAGATGCAGCA AGCGTCTTGGGACGTCGGGTCAGGATTGACGCGCGGGCGTGCACTCGATT TGTGTTGTTCAATCGTAAGAGGTGGATTGCTTTTGTTGCGTTCTTGTGTT TTAATGTTGGTTCCTTGGAGTCGAATTGGTCGAGAGAGGAACGTCCATTT TCGGGAGCATCTCGTGCTCTCGATCCGTGTTGTGGATGGGCGTTCATCGT AAGATGTGAATCATAACATAGACTATTTCTCTTTTTTGTTCGAGTGGAGC TGAGTCCTCAGAATTGAATTCGCCGAGACGGCAACGGATATTGTGTGGGA GCATCTCGTGCTCTCGATCCGTGGTGTTGATGGGCGTTCATCGTAAGATG TGAATCATATTTCTCTATTTTGTTCGAGTGGAGCTGAGTCCTCGGAACTG AATTCGCCGAGACGGCGACGAATATTGTGTGGGAGCATATCTTGCACTCG ATTTGTGTTGATCGTTGACGGGTGTTGTCTACATTAATGTTGGTTGCTTG GAGTCGAATTGGTCGAGAGAGGAACGTCAGTATTCGGGAGCATCTCGTGC TCTCGATCCGTGTTGTTGATGGGTGTTCATCGTAAGATGTGAATCACTAC ATATTTCTCTCTTTTGTTTGAGCGAAGGTGAGTCCTCGGAACTGAATTCG CCGAGACGGCAACGAATATTGTGTGGGAGCATATCTTCCACTCGATTTGC GTTGATCGTTGACGGGTGTTGTCCCCTAGACATAGGGATAGAAAAGCTGA GTTCTCGAAGTTGAATTCGTCGAGAAATTAATGTCTCTATCGGGAGCGTA TGCGTACATATACCCGAGAACTGTTGCTGCTGAAACATGCTGACACTGGT GCAGAAGGGAAGTGGAATAGGGGTGCGGCACTAAGGTTCGGTTGCATTCT CATTCTTCTGTAGAAGGTGCGCTTGCGAACGGGTAAATAGGCCACGGTTG AAGCGTTCTGCGGAGTCCGAAATCAATACTGCAATATTTTCGCGGCTGAA GATGAGGGAGTGAGGCCATCTCTGGAGCTGGTCCCAATGAATTGAAGCTG GGTGGCATTCCCAGACCGACTTTCAAAACCTCGATTGCTCCACAAACAAC GGTGTGCGGAAAGAGCGCGAAAGTAGTAGTTGTTCTGCGGAAAGCCATTT CGAAAATCACCACCATTTTTTAGTGGTGGCAAGCCTGGTTGATGTTGTGG GGGTATGTCGCCCTTGGAAAATCCG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1649:12424..16048+

>mRNA_E-fasciculatus_F_contig1649.4382.1 ID=mRNA_E-fasciculatus_F_contig1649.4382.1|Name=mRNA_E-fasciculatus_F_contig1649.4382.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=978bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1649:12424..16048+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGACGTGCCAGTATTTGGTCATCCTGAAGCGTCCGTGGTCGGCGACGT
TGGGTCCGTTTCCCGTCCCACCGGAACGAACAAAGACGGGTTCTCGCGGG
ACGGAAAAATGCCGCCACCAAAGGAGGGGGTCCGGGATACAGCCGTACGT
CCAACCACGGGGACTGGACCAAGATGGACGTGCCAGTATTTGGTCATCCT
GAAGCGTCCGTGGTCGGCGACGTTGGGTCCGTTTCCCGTCCCACCGGAAC
GAACAAAGACGGGTTCTCGCGGGACGGAAAAATGCCGCCACCAAAGGAGG
GGGTCCGGGATACAGCCGTACGTCCAACCACGGGGACTGGACCAAGCGGT
TACTATTCTCGTGGGGGTCGTGGTGGCGTTGGTCTGCTAGCCTTGGGATT
TGTCTCAGCCATCAACCTGGCCAACGTGGAGAGCAAAACGGTTACTATTC
TCGTGGGGGTCGTGGTGGCGTTGGTCTGCTAGCCTTGGGATTTGTCTCAG
CCATCAACCTGGCCAACGTGGAGAGCAAAATGCTGCTGGTTCAGCTCCCG
TCGGGGTTCAGGTGTATTTGGTACAACCTGCCGCACCTTGTTCAGTTCGT
GGTCTTATTTATGTGCTGCTGGTTCAGCTCCCGTCGGGGTTCAGGTGTAT
TTGGTACAACCTGCCGCACCTTGTTCAGTTCGTGGTCTTATTTATGATGG
TGGTTCTACTGTACGGGGTTAACCGAGCCTTCGACAAGGCAGATGAGGCT
ATGTCCTCTCGCTTATCCTGCGCCACAACGGCGTTTCTCCACGAGAGAAG
GCTCTACCACCACGCTGCTCCCCGCGGAGTTTTCTAGATGGTGGTTCTAC
TGTACGGGGTTAACCGAGCCTTCGACAAGGCAGATGAGGCTATGTCCTCT
CGCTTATCCTGCGCCACAACGGCGTTTCTCCACGAGAGAAGGCTCTACCA
CCACGCTGCTCCCCGCGGAGTTTTCTAG
back to top