mRNA_E-fasciculatus_F_contig1649.4381.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1649.4381.1
Unique NamemRNA_E-fasciculatus_F_contig1649.4381.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig1649.4381.1 vs. uniprot
Match: D7FU55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU55_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 2.190e-25
Identity = 87/188 (46.28%), Postives = 113/188 (60.11%), Query Frame = 3
Query:  309 VEQQQHHH--PPGWMKAFMNFFNKLSGRKLLLMAKTSARGLIDRGPTTKDVEEVFAHVTDTTATLAVGFFSLRFGGKTPALVATLVMLAATRSVVSAASTSGLSGAGMTSADMGSSG-------TCEPGNTTDWAT--LIVFLLILNVIVMISATLGMRTCLQWVLATVVEWTRRMGRIRGGGASASP 839
              QQQH H  PPGW K+F N F K SGRKLLLMAK              D+E+++A+V  TTA+  + + SLRFGGKTPAL+A+LV  AA  S VSAASTSGLS AG TSADM   G       T  PG+ TD AT  L+V+++ + V ++++  + +     WVL  ++ W   M R R  G+S SP
Sbjct:   43 TRQQQHLHQYPPGWTKSFKNVFTKSSGRKLLLMAK--------------DLEKMYAYVEGTTASALIFYGSLRFGGKTPALLASLVTGAAASSFVSAASTSGLS-AGTTSADMSDIGSGKKGGTTSVPGDRTDDATWTLLVWIISIGVAMVVAWIVWLSPL--WVLLNLLVWAESMSRSRRRGSSGSP 213          
BLAST of mRNA_E-fasciculatus_F_contig1649.4381.1 vs. uniprot
Match: A0A6H5JVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVI1_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 1.750e-21
Identity = 85/184 (46.20%), Postives = 106/184 (57.61%), Query Frame = 3
Query:  303 IFVEQQQHH---HPPGWMKAFMNFFNKLSGRKLLLMAKTSARGLIDRGPTTKDVEEVFAHVTDTTATLAVGFFSLRFGGKTPALVATLVMLAATRSVVSAASTSGLSGAGMTSADMGSSGTCEP--GNTTDWATLIVFLLILNVIVMISATLGMRTCLQWVLATVVEWTRRMGRIRGGGASASP 839
            I V+QQ      H P  M+A  NF  K+S  ++       +RGL+     TK  E+++AHVT TTA LA+G+ SLR GGK PAL+ATLVM A   SVVSAA+TS LS AG T+AD GSSGT     G+ TD AT  +F  + N+    +    M     WVL T+  W RR  R R  GAS SP
Sbjct:  101 IKVDQQXXXXXXHRPDSMEAAKNFSTKISDGRVF------SRGLL-----TKGFEKLYAHVTVTTAFLALGYASLRIGGKAPALLATLVMKAGALSVVSAATTSCLS-AGATTADTGSSGTTSVLHGDVTDNATWTLFSWMANIGAATALARSMWVFALWVLVTLAFWARRRSRSRNNGASVSP 272          
BLAST of mRNA_E-fasciculatus_F_contig1649.4381.1 vs. uniprot
Match: A0A6H5KZU3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZU3_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 5.260e-21
Identity = 59/95 (62.11%), Postives = 67/95 (70.53%), Query Frame = 1
Query:    1 QVANAEEVTTEHPPPGYFVPVQASVDDVEPLTTENKGVELVQESSGGRGGADLKTAMTTVAEFEFDGGNGGMFAAPLAGGNAVDPAKTSEEKEAF 285
            QV NAE+V  +HP PGY VPVQAS DD +PLT  NKGVE +QE SGG  G D++T MT+ AEF     N G F APL GG+ VD AKTSEE EAF
Sbjct:   75 QVTNAEDVAAKHPLPGYIVPVQASADDADPLTA-NKGVEALQEGSGGGAGTDVETTMTSKAEFNR---NAGTFVAPLGGGS-VDSAKTSEEDEAF 164          
BLAST of mRNA_E-fasciculatus_F_contig1649.4381.1 vs. uniprot
Match: D7FNC7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNC7_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 1.360e-15
Identity = 76/172 (44.19%), Postives = 94/172 (54.65%), Query Frame = 3
Query:  330 HPPGWMKAFMNFFNKLSGRKLLLMAKTSARGLIDRGPTTKDVEEVFAHVTDTTATLAVGFFS-LRFGGKTPALVATLVMLAATRSVVSAASTSGLSGAGMTSADMGSSGTCE-PGNTTDWATLIVFLLILNVIVMISATLGMRTCLQWVLATVVEWTRRMGRIRGGGASASP 839
            H P   +A  NFF K           TSA  +  RG  TK  E+++ H  DTTA+ A+G+FS LRFGG TPAL+ATLV  A T SV SAA+TS LS AG T AD+GS  T + PG+  D AT  +F L++           M+     VLAT+  W     R R  GAS SP
Sbjct:   87 HRPDSTEAVKNFFTK-----------TSAGRVFSRGLLTKGFEKLYTHAADTTASFALGYFSSLRFGGNTPALLATLVTAAGTLSVASAATTSCLS-AGTTVADIGSRATTDVPGDLADDATWALFSLLMKFGGATVLARIMQISALSVLATLAFWATS--RSRKNGASVSP 244          
BLAST of mRNA_E-fasciculatus_F_contig1649.4381.1 vs. uniprot
Match: A0A6H5J5K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5K9_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 1.760e-12
Identity = 61/122 (50.00%), Postives = 75/122 (61.48%), Query Frame = 3
Query:  474 VTDTTATLAVGFFSLRFGGKTPALVATLVMLAATRSVVSAASTSGLSGAGMTSADMGSSGTCE-PGNTTDWATLIVFLLILNVIVMISATLGMRTCLQWVLATVVEWTRRMGRIRGGGASAS 836
            V DTTA+LA+ + SLR GGKTPAL++TLV  A   SVV+AA+TS  S AGMTSA++GSS T   PG+  D AT  +F  I N+    +    MR    WVLAT+  W RR  R R     AS
Sbjct:  176 VCDTTASLALRYASLRLGGKTPALLSTLVTGAGALSVVAAATTSCFS-AGMTSAEIGSSKTTSVPGDLADDATWALFSWITNIGAATALAWSMRVFALWVLATLACWARRRNRSRSRKKRAS 296          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1649.4381.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FU55_ECTSI2.190e-2546.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JVI1_9PHAE1.750e-2146.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZU3_9PHAE5.260e-2162.11Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FNC7_ECTSI1.360e-1544.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J5K9_9PHAE1.760e-1250.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1649contigE-fasciculatus_F_contig1649:1660..7857 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons8
Model size2405
Cds size1386
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1649.4381.1prot_E-fasciculatus_F_contig1649.4381.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1649 3055..7182 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928118.905903-UTR-E-fasciculatus_F_contig1649:1659..17671622928118.905903-UTR-E-fasciculatus_F_contig1649:1659..1767Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1649 1660..1767 +
1695995825.5593681-UTR-E-fasciculatus_F_contig1649:1659..17671695995825.5593681-UTR-E-fasciculatus_F_contig1649:1659..1767Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1649 1660..1767 +
1622928118.9183424-UTR-E-fasciculatus_F_contig1649:2199..23991622928118.9183424-UTR-E-fasciculatus_F_contig1649:2199..2399Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1649 2200..2399 +
1695995825.5679562-UTR-E-fasciculatus_F_contig1649:2199..23991695995825.5679562-UTR-E-fasciculatus_F_contig1649:2199..2399Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1649 2200..2399 +
1622928118.930966-UTR-E-fasciculatus_F_contig1649:3018..30541622928118.930966-UTR-E-fasciculatus_F_contig1649:3018..3054Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1649 3019..3054 +
1695995825.5770721-UTR-E-fasciculatus_F_contig1649:3018..30541695995825.5770721-UTR-E-fasciculatus_F_contig1649:3018..3054Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1649 3019..3054 +
1622928119.0187705-UTR-E-fasciculatus_F_contig1649:7182..78571622928119.0187705-UTR-E-fasciculatus_F_contig1649:7182..7857Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1649 7183..7857 +
1695995825.658271-UTR-E-fasciculatus_F_contig1649:7182..78571695995825.658271-UTR-E-fasciculatus_F_contig1649:7182..7857Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1649 7183..7857 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928118.9429345-CDS-E-fasciculatus_F_contig1649:3054..31591622928118.9429345-CDS-E-fasciculatus_F_contig1649:3054..3159Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1649 3055..3159 +
1695995825.5863888-CDS-E-fasciculatus_F_contig1649:3054..31591695995825.5863888-CDS-E-fasciculatus_F_contig1649:3054..3159Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1649 3055..3159 +
1622928118.9544387-CDS-E-fasciculatus_F_contig1649:3787..38521622928118.9544387-CDS-E-fasciculatus_F_contig1649:3787..3852Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1649 3788..3852 +
1695995825.6069918-CDS-E-fasciculatus_F_contig1649:3787..38521695995825.6069918-CDS-E-fasciculatus_F_contig1649:3787..3852Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1649 3788..3852 +
1622928118.96682-CDS-E-fasciculatus_F_contig1649:4277..44111622928118.96682-CDS-E-fasciculatus_F_contig1649:4277..4411Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1649 4278..4411 +
1695995825.6202197-CDS-E-fasciculatus_F_contig1649:4277..44111695995825.6202197-CDS-E-fasciculatus_F_contig1649:4277..4411Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1649 4278..4411 +
1622928118.9812462-CDS-E-fasciculatus_F_contig1649:5314..54001622928118.9812462-CDS-E-fasciculatus_F_contig1649:5314..5400Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1649 5315..5400 +
1695995825.6292036-CDS-E-fasciculatus_F_contig1649:5314..54001695995825.6292036-CDS-E-fasciculatus_F_contig1649:5314..5400Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1649 5315..5400 +
1622928118.9957898-CDS-E-fasciculatus_F_contig1649:6174..65931622928118.9957898-CDS-E-fasciculatus_F_contig1649:6174..6593Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1649 6175..6593 +
1695995825.6398258-CDS-E-fasciculatus_F_contig1649:6174..65931695995825.6398258-CDS-E-fasciculatus_F_contig1649:6174..6593Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1649 6175..6593 +
1622928119.0058134-CDS-E-fasciculatus_F_contig1649:6605..71821622928119.0058134-CDS-E-fasciculatus_F_contig1649:6605..7182Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1649 6606..7182 +
1695995825.6499066-CDS-E-fasciculatus_F_contig1649:6605..71821695995825.6499066-CDS-E-fasciculatus_F_contig1649:6605..7182Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1649 6606..7182 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1649.4381.1

>prot_E-fasciculatus_F_contig1649.4381.1 ID=prot_E-fasciculatus_F_contig1649.4381.1|Name=mRNA_E-fasciculatus_F_contig1649.4381.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=462bp
MKAFMNFFNKLSGRKLLLMAKTSARGLIDRGPTTKDVEEVFAHVTDTTAT
LAVGFFSLRFGGKTPALVATLVMLAATRSVVSAASTSGLSGAGMTSADMG
SSGTCEPGNTTDWATLIVFLLILNVIVMISATLGMRTCLQWVLATVVEWT
RRMGRIRGGGASASPSTPPAAVVATRAAAADAQRPAAPTAAAQDAAAQVA
ATPPAAAAVAATASTAATASTAVSPASVDDIPATATPNIPARPVTLAPGP
LPAPASTGPIDSPNVGAGAVAAATAVATTAVPAGAVTSSAEPEPPRVSRR
RRFLQLTVPFCKCIPTNANEVASNPAAAPAAAALVAVPNMTASQAATAPA
TSTAAAENPGPPTPASAGPAAPVPNPTAANGAAAAAPVGAAPASAQPAPS
RRVGRGRRFLGALCFCSLRALSLCDRMASNVAEAASNINEAACRFCEGLS
QVLEMVGGMVG*
back to top

mRNA from alignment at E-fasciculatus_F_contig1649:1660..7857+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1649.4381.1 ID=mRNA_E-fasciculatus_F_contig1649.4381.1|Name=mRNA_E-fasciculatus_F_contig1649.4381.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=6198bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1649:1660..7857+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGTGGCCAACGCGGAGGAAGTCACCACCGAGCACCCTCCCCCTGGCTA CTTCGTGCCCGTCCAAGCCTCCGTGGACGATGTGGAACCTCTTACAACGG AGAATAAGGTGCATTTGCACGGATTTCTCTGATCCGGAGGTGTTTGATCT CTCACCGTTGCTTGTGACATTTCGTTGTCTTGCGCGCGCCCTCAGCATCC CAACAGACCCGACTCCTTGAGATTTTGATCAAACCTACTCCAACATCTCC AGCTTTCCGTGTTCTCTACCTGGGCAATCTTCCTCACTTTCGACGGGACA CTTTGTTGTAAGATTCCGCGGAGGGACCGGGTGGGAATGACTATCGCTAT GCGGCGACAAGCGGCCATTGCTGGTAGACGACCGACTTGAATATGGCACC AAGTCTGACTACATGAAAAAGAATAAAAACGCTCGCGCACATGCCGCCAC CCACGGGGGTTCGAAAGTCTCTAGCCGCTAAGGCATACATGCTAAACACG AGTACGCCCCCCCCCCCCCCCCCGAACGCCTAATCGACAGGGAGTTGAAC TCGTCCAGGAAAGCAGCGGGGGCCGCGGTGGGGCCGACCTCAAGACGGCC ATGACCACCGTGGCCGAGTTTGAATTCGACGGTGGTAACGGCGGGATGTT CGCTGCACCCCTGGCGGGCGGCAACGCCGTGGATCCGGCGAAGACCTCTG AGGAGAAAGAGGCATTTCTCATGGTGCGTTGTGTATTTTTGTTGCTCTCG GCTGCTCGGCAGCGGCCGTCAGGATAATTATACATCGTGTGTGATGAATG TGTTGTGTGTGTGTCGTTGTTATTGTTAGCATCGACCGCGCCAAACGGCT GAGCATTGAAAAGACACCAGTCTCAGTGTGGTTGACAACAGTGTCTGTAC GTGTGTTTTTGTTTTTTGTTCAGGGGTAGCACACCATTTCTTGCTGTGAT ATTCGTCGATACATAGGTACCGACGATGCTTGTACATGGGCGGCGCCTTG GCTCCGTCGTGCCTTGTTGCGAGCAGGCGCTCAACAGCACCACGAGCACA GGCGAGGAACAATCTCTCTCGAAAATGGCAACAGAGCACGGGCTCCGGCC AGTGGCAATCGGTGCGTTGCTTCCTCCCGCACAGACGGTTTGGGCCATAG TCCCGTTGGTCCGTGCATAGCCTGCAGAGTATTTCTACGTGGTGTAGAGG AGGGGGAGGGACGGTATCCGCACACCGACGACATTCCGAGACCACCACAT CCACCACCATGCACATGAAGAAGGTTTGAGCCGTTTCTGAACACAGTTTT GTTGTCCGTCCTCGTCCTTCTGCTGCGCACGTGCCTTGCGGTGCTTCATG TTGGGCCAGGTCGAGCAGCAGCAGCACCACCACCCGCCCGGCTGGATGAA GGCCTTCATGAATTTCTTCAACAAGTTGAGCGGTCGCAAGCTCCTACTCA TGGCCAAGACCTCCGCCCGAGGACTCATCGACAGAGGACCCACGACAAAG GTAAGGAAAGCACGGCAAAGAGTGAGCGTGTTTGTTTTACTTCAGCCGAG CCGCAGTTTGTTGTGTATGCGGGTGCTTGAGCAAGCTGGCACCCCGGGAC CAAGGATCTGTTCTTGCCGCTATGTACGTCTAGTTCGAAACTGGAAACGA AAAATGCCAGAATTTGTTTCGATGAACGAAAGAACGACCCCAAAAAAGAG CGCCAAGTACGATGTGTCGAGGAAGGCAGGGAAGGCACGACGGCAGAGAC GTTGATTTTTCGTCGTGATGGGGAGAGAGGGGGGGGGGCAACTGAGCCGC GAGGTTCCCGCACACCCGCGCTCCTGGCACCGATGTCGACAGGTGGCGCA TGTTACAGTGGATGCATGCACCCACCCTGCCTGTTGGTTTGCTCCACATT TTGCATTGTGTTCACGGTGCGGTTTAGCCACACCGCGCTGCACCGTCACG TTTCGAAACGAAGAAAACCGAACCGAACCGCACCGCACCGCACCGCACCG CATCGTGACCATGTCAAAAAAACATCACCGGGTTGCGATTCTACACCGTG AGTATCCCCCGACAGTTTGTTTGGTTGAGCTAATTCCCTGTGCCGCCTCT TTTGTTCTTCTGGCATCGAAATATACAGGACGTGGAGGAAGTGTTCGCCC ACGTCACGGACACCACCGCTACCCTCGCCGTTGGCTTTTTCAGGTTCGTT TTCGGGAACAGCTTGCGGGATATGTACGAGTGCGGGGGACCCTGAGCACG TGTCTTTTTTATCTTGGTGGCATCGACCGCGCTAGCTTACCGGCTGACCA ATGAAATTACGTCAGTGTCGGAGCGGTTGAAAATACAAAACTTTTTCTAG ATGCCACGAACCTAGACAAGTTGTGCGGGACACACCTATGCTCGACAGCT GGTGATGAAGTAAATCTGAGCCTCTGGTCGATTTCAACGTGTGTTGCGTA TGCCCGAAACGTACGTATGTTGCTGCACTCTTTTGCGCCGCCTTTTGCCA TGTATCTCTGTCCGTCCGTATTGGCGCCCTCCGTACGACGTGCCAATCAA CTGCTGTCATCGTTCTCCTGCTGCACTCGTTTGCCACCCTTGTCATACCC GTCCGTCACGGCGAGCAGCCTCCGCTTCGGTGGTAAGACGCCCGCGCTGG TGGCGACTCTGGTGATGCTGGCGGCGACGCGCTCGGTTGTGTCCGCCGCT TCGACCAGCGGCTTGTCGGGAGCAGGGATGACGAGCGCGGACATGGGCTC AAGTAAGAAAACTTGTTTGTTTTGCCCAACGAGAAAACGTTGCCAATGTT TCGCCGTCCGCCCCATCCACCGCATTGCTGTTCGTGGCCTCTACAGTACC ACCCTCAAAGGGTGGTGTTGAGAGACTGCGGACGACTGTGCTATCCCAGG AACGGTAGGCGAGGAAACTTCCAGGAAAACTCCTCGCGTATTCACTACAA AGTAGGGGAGGGTGATACAAGGCCGCCTATTAGTGCCGCATATTTCACTA TTCAGAGTACATGCGTAAAATTCCGGTTGCCCTGTATGATGCCCTTCAAA TCATCCGGGACAGATAGATTGAATATGCATCTATGAATGATGCCGGTTGG CCGCTATGAATGATGCCGGTTGGCCGCTATGAATGATGCCGGTTGGCCGC TATGGCAGCTTTGGAACAATCACGTCGAGAATTTTGTGCTTGCGACCATC GGTCGGAATGAATGCCGGTCCAAGAGGCTCGCACCTAAAACACTGTCGAG ACAAGTTGAATATTTCATCTCACCGGCCATAATCTGTACATGACGCGGCT CCGCTGGAAGGGACTCCCGTATCGAGACTGTTGGTACGGCAGTTTTTGAT AGAGGACGCACCGCACTGGCGAGTACTCAAACTGGCGACGCCACCCCCCT CATGCCAACCCGTGCCGTGTATTTTGTTTGCCTCCGCTGGAGCACTTAGC ATTTAAGAAGTTGGGCTAGCTCATAAAGGGATATCCAACATCTAAGAACT AGGTCACGAAAACAGGATGCTCAGTCAAGAGGCCTACACTAAGACACTGT TGGGATGCAATACCCCATGGAAAAAAAACAAATAACGAGCCTCGACCAGT ACGAAGGTGGCGCGTTCTGTGCGCTTATTTGTTTTTGGACGCGGTGTCGC CACAGGTGGGACTTGTGAGCCTGGAAACACCACCGACTGGGCGACATTGA TCGTGTTCCTCTTGATCTTGAACGTGATCGTGATGATATCGGTAAGCACG GGTCCCGCCCGCTTTCTTTCATTGTCGCTCAGGACCGGTGCTACGGTAGA GGGGGGAGCGCACTTTTTGAGAAAACGTGCAGTACATGTTTCGGTCAGGT CTGTTTGCGCAGAGGTGTGCCTCCCTACCCCAAAGTGTGTAGGATGAGGT GACCCTCCTACCGTAGCAGCATCATTCTCAAGCAATTTTCGGTTCGGCGT TCTATATACCGTAGATGACTTGACTTGAGCGGGACGTCACATACCTACCC CCGGTCGGGTTTTCTCACGAGCTCGATTTCTATTCGTGGTGCCGCGTCGT CGAGAGCTTCCCGAAAACGTACTGTAGGGGACATGACACAAGATAGCACG CCTCCTGGACCGATTTTCAAAGCCCGAATACTGCACGGCGACGAGGACAC CGAAATTCTTGTTGTGCGTTTTCGGAAATTCTTGTGTCTCTCTCTCGACG AGACGAGACGGTCCTAACGCCGCCAGTTGTCGGCACGGTTGATGCTTTCC TGCCGAGTAATCGAGCTTTGAGAATTGGTCCAGGATGTGTGGATTCTTAC ATCATGCCACCTACGGTATAGGTCATCGCTTCATTTGTTGTTGCAGCCTG TTCTTCATCGATCAAGTATAAATTTAAATCTGTCGCCTACGGTACGTGTG CTTGAGACCGACCGTGCTTCCGCGTACGAATAGGGGGCCCTTGTTACAGA CAGCCCCCACCGCCGTTTCCGCTAACGCTGTAACATTTTGAACGTCTGAC GTGTCATGTGCTCAGGCGACCTTGGGTATGCGGACATGCCTACAATGGGT CCTGGCCACCGTCGTCGAGTGGACAAGGAGAATGGGACGTATCAGGGGGG GTGGGGCATCGGCCTCGCCGAGTACGCCCCCCGCAGCCGTCGTGGCCACC CGCGCCGCAGCAGCCGACGCCCAGCGCCCCGCCGCCCCAACCGCCGCCGC CCAAGATGCAGCCGCCCAAGTTGCAGCCACACCTCCGGCGGCGGCGGCGG TGGCAGCGACCGCATCTACGGCGGCGACTGCATCTACGGCCGTGTCTCCT GCGTCGGTAGACGATATCCCCGCGACAGCCACGCCCAACATCCCCGCCCG ACCCGTGACCCTAGCTCCAGGGCCTCTTCCTGCGCCCGCGAGCACCGGGC CTATCGATAGCCCTAACGTCGGGGCGGGCGCCGTCGCCGCCGCCGCCGCC GCCGCCACCGCCGTCGCCACCACCGCGGTTCCGGCGGGGGCGGTCACTTC TTCGGCCGAACCTGAACCACCCCGGGTATCGCGACGCCGCAGGTTCCTTC AGCTCACGGTGCCCTTCTGCAAGTGCATCCCGACCAACGCGAACGAAGTA GCTTCTAATCCGGCGGCGGCTCCGGCGGCGGCGGCTCTGGTGGCTGTGCC CAACATGACCGCATCTCAGGCGGCAACGGCACCTGCGACTTCAACAGCTG CCGCCGAAAACCCAGGGCCGCCTACGCCGGCGAGCGCCGGCCCTGCGGCA CCCGTGCCCAACCCTACCGCCGCCAACGGCGCCGCCGCCGCAGCTCCGGT GGGGGCGGCTCCTGCTTCGGCCCAGCCTGCCCCCTCCCGGCGGGTAGGCC GCGGTCGCAGGTTCCTGGGTGCGCTGTGCTTCTGCAGCCTGCGCGCACTG TCCCTCTGCGACCGCATGGCGTCCAATGTGGCCGAAGCGGCTTCCAACAT CAACGAAGCAGCTTGTCGCTTTTGCGAGGGCCTCTCCCAAGTACTCGAGA TGGTGGGGGGAATGGTGGGGTAGGCTGGGCCGTCCGTCGGCCTGTTCGTT CGTTACAGTGCCTCCGTTTCTGTAGTGTGCGGGTGACGTACTTTGCGTGC GCGGGGGGTTCAACAGGAGGGAGGAGGTTTAGACCCGCCGGGGCAGATAC CACGCCGGTGCTATTGTGGCGTGTCCGGGTCTTCTCGTATCGTGTGCATG GGATGGGTCGATAGCTGACGGTCACTATTAGCTTAGGTCCCACCAGCCTT TGGAGGGTTTTCTTCCATTAGGTTAGCATGTTTGGCTAGGGCTAGGGTCT GCGTACCCCCACCTTATTCTAGTGTTTCCTGCTACCTCGCGAAGGCGTCC GTGGCGGCTTAGACTGGCTAGGGCAGGTACCACCGGCGCGTGCCGTGTTG GCTGATGTTTCCTTCTTTTTCGTGTAAGCGCGCGTGTGTGTGTGTGTGTG GGTCGTCGCACGTCATGATCGTGCTCTTCCTTCCTTTCAGCTCACGTACG TACTGCGTATGTATAAGCAAGCGGCGTGTCGCACACCGTCCGTGAGAAGG TAGACTCATGCAGCGCTCGACGACGTCGCGTCGTCGGTCTTCCTCAAGGG ATTAGTCTGCTGCGTGTTGCTCAAGTAGGTGTGGGAAGCGAGCAATTCGT CCTTTCGTGACGTTTTTTTTTAATATATTTTGCTAGTTGCTATTCGGG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1649:1660..7857+

>mRNA_E-fasciculatus_F_contig1649.4381.1 ID=mRNA_E-fasciculatus_F_contig1649.4381.1|Name=mRNA_E-fasciculatus_F_contig1649.4381.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2772bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1649:1660..7857+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAAGGCCTTCATGAATTTCTTCAACAAGTTGAGCGGTCGCAAGCTCCT
ACTCATGGCCAAGACCTCCGCCCGAGGACTCATCGACAGAGGACCCACGA
CAAAGATGAAGGCCTTCATGAATTTCTTCAACAAGTTGAGCGGTCGCAAG
CTCCTACTCATGGCCAAGACCTCCGCCCGAGGACTCATCGACAGAGGACC
CACGACAAAGGACGTGGAGGAAGTGTTCGCCCACGTCACGGACACCACCG
CTACCCTCGCCGTTGGCTTTTTCAGGACGTGGAGGAAGTGTTCGCCCACG
TCACGGACACCACCGCTACCCTCGCCGTTGGCTTTTTCAGCCTCCGCTTC
GGTGGTAAGACGCCCGCGCTGGTGGCGACTCTGGTGATGCTGGCGGCGAC
GCGCTCGGTTGTGTCCGCCGCTTCGACCAGCGGCTTGTCGGGAGCAGGGA
TGACGAGCGCGGACATGGGCTCAACCTCCGCTTCGGTGGTAAGACGCCCG
CGCTGGTGGCGACTCTGGTGATGCTGGCGGCGACGCGCTCGGTTGTGTCC
GCCGCTTCGACCAGCGGCTTGTCGGGAGCAGGGATGACGAGCGCGGACAT
GGGCTCAAGTGGGACTTGTGAGCCTGGAAACACCACCGACTGGGCGACAT
TGATCGTGTTCCTCTTGATCTTGAACGTGATCGTGATGATATCGGTGGGA
CTTGTGAGCCTGGAAACACCACCGACTGGGCGACATTGATCGTGTTCCTC
TTGATCTTGAACGTGATCGTGATGATATCGGCGACCTTGGGTATGCGGAC
ATGCCTACAATGGGTCCTGGCCACCGTCGTCGAGTGGACAAGGAGAATGG
GACGTATCAGGGGGGGTGGGGCATCGGCCTCGCCGAGTACGCCCCCCGCA
GCCGTCGTGGCCACCCGCGCCGCAGCAGCCGACGCCCAGCGCCCCGCCGC
CCCAACCGCCGCCGCCCAAGATGCAGCCGCCCAAGTTGCAGCCACACCTC
CGGCGGCGGCGGCGGTGGCAGCGACCGCATCTACGGCGGCGACTGCATCT
ACGGCCGTGTCTCCTGCGTCGGTAGACGATATCCCCGCGACAGCCACGCC
CAACATCCCCGCCCGACCCGTGACCCTAGCTCCAGGGCCTCTTCCTGCGC
CCGCGAGCACCGGGCCTATCGATAGCCCTAACGTCGGGGCGGGCGCCGTG
CGACCTTGGGTATGCGGACATGCCTACAATGGGTCCTGGCCACCGTCGTC
GAGTGGACAAGGAGAATGGGACGTATCAGGGGGGGTGGGGCATCGGCCTC
GCCGAGTACGCCCCCCGCAGCCGTCGTGGCCACCCGCGCCGCAGCAGCCG
ACGCCCAGCGCCCCGCCGCCCCAACCGCCGCCGCCCAAGATGCAGCCGCC
CAAGTTGCAGCCACACCTCCGGCGGCGGCGGCGGTGGCAGCGACCGCATC
TACGGCGGCGACTGCATCTACGGCCGTGTCTCCTGCGTCGGTAGACGATA
TCCCCGCGACAGCCACGCCCAACATCCCCGCCCGACCCGTGACCCTAGCT
CCAGGGCCTCTTCCTGCGCCCGCGAGCACCGGGCCTATCGATAGCCCTAA
CGTCGGGGCGGGCGCCGTCGCCGCCGCCACCGCCGTCGCCACCACCGCGG
TTCCGGCGGGGGCGGTCACTTCTTCGGCCGAACCTGAACCACCCCGGGTA
TCGCGACGCCGCAGGTTCCTTCAGCTCACGGTGCCCTTCTGCAAGTGCAT
CCCGACCAACGCGAACGAAGTAGCTTCTAATCCGGCGGCGGCTCCGGCGG
CGGCGGCTCTGGTGGCTGTGCCCAACATGACCGCATCTCAGGCGGCAACG
GCACCTGCGACTTCAACAGCTGCCGCCGAAAACCCAGGGCCGCCTACGCC
GGCGAGCGCCGGCCCTGCGGCACCCGTGCCCAACCCTACCGCCGCCAACG
GCGCCGCCGCCGCAGCTCCGGTGGGGGCGGCTCCTGCTTCGGCCCAGCCT
GCCCCCTCCCGGCGGGTAGGCCGCGGTCGCAGGTTCCTGGGTGCGCTGTG
CTTCTGCAGCCTGCGCGCACTGTCCCTCTGCGACCGCATGGCGTCCAATG
TGGCCGAAGCGGCTTCCAACATCAACGAAGCAGCTTGTCGCTTTTGCGAG
GGCCTCTCCCAAGTACTCGAGATGGTGGGGGGAATGGTGGGGTAGCGCCG
CCGCCACCGCCGTCGCCACCACCGCGGTTCCGGCGGGGGCGGTCACTTCT
TCGGCCGAACCTGAACCACCCCGGGTATCGCGACGCCGCAGGTTCCTTCA
GCTCACGGTGCCCTTCTGCAAGTGCATCCCGACCAACGCGAACGAAGTAG
CTTCTAATCCGGCGGCGGCTCCGGCGGCGGCGGCTCTGGTGGCTGTGCCC
AACATGACCGCATCTCAGGCGGCAACGGCACCTGCGACTTCAACAGCTGC
CGCCGAAAACCCAGGGCCGCCTACGCCGGCGAGCGCCGGCCCTGCGGCAC
CCGTGCCCAACCCTACCGCCGCCAACGGCGCCGCCGCCGCAGCTCCGGTG
GGGGCGGCTCCTGCTTCGGCCCAGCCTGCCCCCTCCCGGCGGGTAGGCCG
CGGTCGCAGGTTCCTGGGTGCGCTGTGCTTCTGCAGCCTGCGCGCACTGT
CCCTCTGCGACCGCATGGCGTCCAATGTGGCCGAAGCGGCTTCCAACATC
AACGAAGCAGCTTGTCGCTTTTGCGAGGGCCTCTCCCAAGTACTCGAGAT
GGTGGGGGGAATGGTGGGGTAG
back to top