mRNA_E-fasciculatus_F_contig16487.4380.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig16487.4380.1 vs. uniprot
Match: D7G0B5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B5_ECTSI) HSP 1 Score: 763 bits (1970), Expect = 1.110e-258 Identity = 494/676 (73.08%), Postives = 508/676 (75.15%), Query Frame = 1
Query: 1 SPSPLGAST-SPPAEETVEQADKEAFVRSAADEITFLTRQAVVETVTPSVPLCCRGGG-SGGTEADGGPDGRRLCMLDVLWAASSLPADGGGAHETSANDGEERQTATTSAAARTAHQDPHDVALTAASAPASGGMPPPP------LTLSEPVDRPCSGPLRSALLETRAHFPRSRITIFPACVQTPGSGEDGGSSXXXXXXXXXXXXXXXXXXXXXXXXXXGGSGLGRRAWQRQWKAWCKSTGARVFLGGGVSAAIEAGLVLDAGLLWRGPVVAGATRRKVSTPAPXXXXXXXXXXXXXXXXXXXXXXXXAANLHNPNPPRPARATPLFPSLDGFALRLAAAAVAPSASGPAEGVHRGVAAGSGLAAAVARGAASTLGRAPALRLARVISPAEVARVCHLLADGDLAPALELFVEDDQRCRGSAEFLKKWAVDGRGLLLVTGAAAAEATGGLRGGRTEAGNGGADEGLAMACFPHYRRRNLRRPREPAGSGGRADVGTVEEDEGRDVAAPVWSVTLFRRASEFSEAAVSALIGESGGDRPI----ISRFALGGSGSGSVLRRMATGASHESPRLDPVEEKEDTGETATTSSVVASLPVYTSASLISQQSSLFLPPQEASSAKSGSAMTPLPLTPAGASTSSRSSSRKRRRSVAPTVVGGTIPSGSKRPAPGAWAL 1992
SPSP GAST SP AE VE ADKEAF RSAADEI LTRQA VETVTP+ PL R GG SGGTEADGG DGRRLCMLDVLWAASS PA+GGGAH+ SAN GE+RQT LTLSEPVDRPCSGPLR+ALL TRAHFPRSRITIFPACVQTP SGE GGSS GS L RRAWQRQWKAWC+STGARVFL GGVSAAIEAG VLDAGLLWRGPVVAG TR XXXXXXXXXXXXXXXXXXXXXXXX A LHNPNPP+PARA P+FPSLDGFALRLAAAAV PSASGP EGV G AAG G AAAVARGA+STLGRAPALRLARVISPAEVAR CHLLADG LAPALELFVEDD+RCRGSAEFLKKWAVDGRGLLLVTGAAAAEATGG+RGGR EAG GG DEGLAMACFPH R RN RRPRE AGSGG ADVG VEEDEGRDV PVWSVTLFR+ASEFSEAAVSAL+GES GDR I ISR A GGS SGSVL RM TG SH SP DPVEEKED GETA TSSVVASLPVY SASLISQQS LF PPQEA SAK G A TPLPLTPAGASTS VVGGTIP GS+R APG AL
Sbjct: 5 SPSPQGASTTSPSAEAAVEHADKEAFARSAADEIALLTRQAAVETVTPAAPLSRRRGGESGGTEADGGHDGRRLCMLDVLWAASSFPAEGGGAHDASANGGEQRQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTLSEPVDRPCSGPLRAALLGTRAHFPRSRITIFPACVQTPRSGEGGGSSGSSSSCRDENGC---------------GSEL-RRAWQRQWKAWCESTGARVFLSGGVSAAIEAGPVLDAGLLWRGPVVAGTTRTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATLHNPNPPQPARAIPVFPSLDGFALRLAAAAVTPSASGPVEGVTSGSAAGGGPAAAVARGASSTLGRAPALRLARVISPAEVARACHLLADGALAPALELFVEDDERCRGSAEFLKKWAVDGRGLLLVTGAAAAEATGGVRGGRAEAGKGGVDEGLAMACFPHRRGRNRRRPRELAGSGGHADVGAVEEDEGRDVTTPVWSVTLFRKASEFSEAAVSALVGESSGDRCIDSGFISRLAWGGSRSGSVLTRMTTGPSHTSPPSDPVEEKEDMGETAATSSVVASLPVYASASLISQQSRLFFPPQEALSAKDG-ATTPLPLTPAGASTSXXXXXXXXXXXXXXXVVGGTIPRGSERRAPGERAL 663
BLAST of mRNA_E-fasciculatus_F_contig16487.4380.1 vs. uniprot
Match: A0A6H5JK10_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK10_9PHAE) HSP 1 Score: 645 bits (1663), Expect = 1.910e-212 Identity = 445/665 (66.92%), Postives = 467/665 (70.23%), Query Frame = 1
Query: 304 RQTATTSAAARTAHQDPHDVALTAASAPASGGMPPPP----LTLSEPVDRPCSGPLRSALLETRAHFPRSRITIFPACVQTPGSGEDGGSSXXXXXXXXXXXXXXXXXXXXXXXXXXGGSGLGRRAWQRQWKAWCKSTGARVFLGGGVSAAIEAGLVLDAGLLWRGPVVAGATRRKVSTPAPXXXXXXXXXXXXXXXXXXXXXXXX------AANLHNPNPPRPARATPLFPSLDGFALRLAAAAVAPSASGPAEGVHRGVAAGSGLAAAVARGAASTLGRAPALRLARVISPAEVARVCHLLADGDLAPALELFVEDDQRCRGSAEFLKKWAVDGRGLLLVTGAAAAEATGGLRGGRTEAGNGGADEGLAMACFPHYRRRNLRRPREPAGSGGRADVGTVEEDEGRDVAAPVWSVTLFRRASEFSEAAVSALIGESGGDR----PIISRFALGGSGSGSVLRRMATGASHESPRLDPVEEKEDTGETATTSSVVASLPVYTSASLISQQSSLFLPPQEASSAKSGSAMTPLPLTPAGASTSSRSSSRKRRRSVAPTVVGGTIPSGSKRPAPGAWALEAEAASWSSPSPRERGVRRRSSRIVGVLAAAEANKQLPELEERSVAAAAEDGRRRKTGESASGKARSVCGGGSGRGAGCKGGKDTRVE 2256
RQTAT ARTA QD H VA TAASAPAS MP LTLSEPVDRPCSGPLRSALLETRAHFPRSRITIFPACV+TP SGED G XXXXXXXXXX GS L RAWQRQWKAWC+STGARVFLG GVSAAIEAG VLDAGLLWRGPVVAGATR VS P XXXXXXXXXXXXXXXXX AA LHN N P+PARA P+FPSLDGFALRLAAA+VAPSAS P EG RG AAG G AA VARGA+STLGRAPALRLARVISP EVAR CHLLADG LAPALELFVEDD+RCRGSAEFL++WAVDGRGLLLVTGAAAA+ATGG+RGGR E G GG DEGLAMACFPH+RRRN R PRE AGS G ADVG VEEDEGRD APVWSVTLFR+ASEFSE AVSAL+GE+GGDR ++SR A GGSGSGSVL RM TG SH SP DPVEEKEDTGET TSSVVASLPVYT ASLISQQS LF PPQEA SAK A TIP SKR APG AL AEA+ VG LA AE N QL EL+ ESAS +ARS GG+GRGAGCKG + RVE
Sbjct: 63 RQTAT----ARTARQDSHGVAFTAASAPASADMPXXXXXXXLTLSEPVDRPCSGPLRSALLETRAHFPRSRITIFPACVRTPRSGEDDGXXXXXXXXXXXXSCRDENGC---------GSEL-CRAWQRQWKAWCESTGARVFLGHGVSAAIEAGPVLDAGLLWRGPVVAGATRTPVSASVPPXXXXXXXXXXXXXXXXXVPPRTSSGTSYSAATLHNSNHPQPARAIPVFPSLDGFALRLAAASVAPSASAPVEGAPRGAAAGGGPAATVARGASSTLGRAPALRLARVISPVEVARACHLLADGGLAPALELFVEDDERCRGSAEFLRRWAVDGRGLLLVTGAAAAQATGGVRGGRAEVGKGGMDEGLAMACFPHHRRRNRRLPRELAGSRGHADVGAVEEDEGRDETAPVWSVTLFRKASEFSEVAVSALVGETGGDRCMDSGLVSRLAWGGSGSGSVLMRMTTGPSHASPPSDPVEEKEDTGETPATSSVVASLPVYTPASLISQQSRLFFPPQEALSAKPDGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIPRASKRRAPGEEALGAEASCXXXXXXXXXXXXXXXXXXVGALAVAEMNNQLSELQXXXXXXXXXXXXXXXXXESASSEARSAYRGGNGRGAGCKGEEGKRVE 713
BLAST of mRNA_E-fasciculatus_F_contig16487.4380.1 vs. uniprot
Match: A0A6H5JEQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEQ1_9PHAE) HSP 1 Score: 111 bits (278), Expect = 6.480e-23 Identity = 67/92 (72.83%), Postives = 70/92 (76.09%), Query Frame = 1
Query: 1 SPSPLGASTS-PPAEETVEQADKEAFVRSAADEITFLTRQAVVETVTPSVPLCCRGGG-SGGTEADGGPDGRRLCMLDVLWAASSLPADGGG 270
SPSPLGAST+ P A VE ADKEAF RSAADEI LTRQA VETVTP+ L R GG SGGT GG DGRRLCMLDVLWAASS PA+G G
Sbjct: 263 SPSPLGASTTGPSAGAAVEYADKEAFARSAADEIASLTRQATVETVTPAALLPRRWGGESGGTATGGGHDGRRLCMLDVLWAASSFPAEGEG 354 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16487.4380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig16487.4380.1 >prot_E-fasciculatus_F_contig16487.4380.1 ID=prot_E-fasciculatus_F_contig16487.4380.1|Name=mRNA_E-fasciculatus_F_contig16487.4380.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=752bp SPSPLGASTSPPAEETVEQADKEAFVRSAADEITFLTRQAVVETVTPSVPback to top mRNA from alignment at E-fasciculatus_F_contig16487:130..2741- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig16487.4380.1 ID=mRNA_E-fasciculatus_F_contig16487.4380.1|Name=mRNA_E-fasciculatus_F_contig16487.4380.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2612bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16487:130..2741- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16487:130..2741- >mRNA_E-fasciculatus_F_contig16487.4380.1 ID=mRNA_E-fasciculatus_F_contig16487.4380.1|Name=mRNA_E-fasciculatus_F_contig16487.4380.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=4512bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16487:130..2741- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |