mRNA_E-fasciculatus_F_contig16480.4378.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16480.4378.1
Unique NamemRNA_E-fasciculatus_F_contig16480.4378.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16480.4378.1 vs. uniprot
Match: A0A6H5JK02_9PHAE (Beta_helix domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK02_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 6.560e-6
Identity = 27/28 (96.43%), Postives = 28/28 (100.00%), Query Frame = 1 
Query:    1 QAALDSASPGTTILIEAGTYHEALKSRV 84
            QAALD+ASPGTTILIEAGTYHEALKSRV
Sbjct:  372 QAALDAASPGTTILIEAGTYHEALKSRV 399
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BLAST of mRNA_E-fasciculatus_F_contig16480.4378.1 vs. uniprot
Match: D7G073_ECTSI (Putative nosD copper-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G073_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 7.290e-5
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = 1 
Query:    1 QAALDSASPGTTILIEAGTYHEALKSR 81
            QAALD+ASPGTTILIEAGTYHEA KSR
Sbjct:  101 QAALDAASPGTTILIEAGTYHEAFKSR 127
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16480.4378.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JK02_9PHAE6.560e-696.43Beta_helix domain-containing protein n=1 Tax=Ectoc... [more]
D7G073_ECTSI7.290e-592.59Putative nosD copper-binding protein n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16480contigE-fasciculatus_F_contig16480:2352..2744 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size395
Cds size300
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928116.9826355-UTR-E-fasciculatus_F_contig16480:2351..24441622928116.9826355-UTR-E-fasciculatus_F_contig16480:2351..2444Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16480 2352..2444 +
1695995825.4984975-UTR-E-fasciculatus_F_contig16480:2351..24441695995825.4984975-UTR-E-fasciculatus_F_contig16480:2351..2444Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16480 2352..2444 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928118.5673187-CDS-E-fasciculatus_F_contig16480:2444..27441622928118.5673187-CDS-E-fasciculatus_F_contig16480:2444..2744Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16480 2445..2744 +
1695995825.5069437-CDS-E-fasciculatus_F_contig16480:2444..27441695995825.5069437-CDS-E-fasciculatus_F_contig16480:2444..2744Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16480 2445..2744 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16480.4378.1prot_E-fasciculatus_F_contig16480.4378.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16480 2445..2744 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16480.4378.1

>prot_E-fasciculatus_F_contig16480.4378.1 ID=prot_E-fasciculatus_F_contig16480.4378.1|Name=mRNA_E-fasciculatus_F_contig16480.4378.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=100bp
MVQYIMRIVVSRVTHSSVVTNNSIVGMEWCCRTTRPYEQINPSNLHPTEE
KLQEAAKAVFVYLYPCIPQPLFLFLNFCSRCLDPCYLKLASSAPIQPPPP
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mRNA from alignment at E-fasciculatus_F_contig16480:2352..2744+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16480.4378.1 ID=mRNA_E-fasciculatus_F_contig16480.4378.1|Name=mRNA_E-fasciculatus_F_contig16480.4378.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=393bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16480:2352..2744+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGCTGCCCTCGACTCTGCCTCCCCCGGCACCACCATCCTGATCGAGGC
TGGCACCTACCACGAGGCCCTCAAGTCCAGGGTACGTCTGTAGATGGTAC
AATACATCATGCGTATTGTTGTGTCGCGTGTCACGCACAGCAGTGTAGTA
ACAAACAATTCGATTGTCGGCATGGAGTGGTGTTGTCGCACAACACGCCC
TTATGAACAAATAAATCCATCTAACCTTCACCCTACAGAAGAAAAATTAC
AGGAAGCAGCAAAAGCAGTATTTGTGTATTTGTATCCATGCATACCGCAA
CCGTTGTTTCTTTTTCTCAATTTCTGCTCGAGATGTCTTGACCCATGTTA
TCTCAAGCTTGCAAGCAGCGCACCGATTCAACCCCCCCCCCCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16480:2352..2744+

>mRNA_E-fasciculatus_F_contig16480.4378.1 ID=mRNA_E-fasciculatus_F_contig16480.4378.1|Name=mRNA_E-fasciculatus_F_contig16480.4378.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=600bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16480:2352..2744+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTACAATACATCATGCGTATTGTTGTGTCGCGTGTCACGCACAGCAG
TGTAGTAACAAACAATTCGATTGTCGGCATGGAGTGGTGTTGTCGCACAA
CACGCCCTTATGAACAAATAAATCCATCTAACCTTCACCCTACAGAAGAA
AAATTACAGGAAGCAGCAAAAGCAGTATTTGTGTATTTGTATCCATGCAT
ACCGCAACCGTTGTTTCTTTTTCTCAATTTCTGCTCGAGATGTCTTGACC
CATGTTATCTCAAGCTTGCAAGCAGCGCACCGATTCAACCCCCCCCCCCC
ATGGTACAATACATCATGCGTATTGTTGTGTCGCGTGTCACGCACAGCAG
TGTAGTAACAAACAATTCGATTGTCGGCATGGAGTGGTGTTGTCGCACAA
CACGCCCTTATGAACAAATAAATCCATCTAACCTTCACCCTACAGAAGAA
AAATTACAGGAAGCAGCAAAAGCAGTATTTGTGTATTTGTATCCATGCAT
ACCGCAACCGTTGTTTCTTTTTCTCAATTTCTGCTCGAGATGTCTTGACC
CATGTTATCTCAAGCTTGCAAGCAGCGCACCGATTCAACCCCCCCCCCCC
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