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Homology
BLAST of mRNA_E-fasciculatus_F_contig1648.4377.1 vs. uniprot
Match: D8LEL2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEL2_ECTSI) HSP 1 Score: 326 bits (835), Expect = 1.690e-108 Identity = 189/232 (81.47%), Postives = 199/232 (85.78%), Query Frame = 1
Query: 1 GPLLDSSFDLLMLREPVPDPTDQTLYVNRTRDKLEQRQALRKQERRVGCAGGVTGVGSGGARSAIGGGDRGXXXXXXXXXXXQGQRGVEENVAAAVGNSAGEKTSAAP----EQWTLVEPLREGTLVSPITINLEREHVMAERRRLYQIDSDFAARKNARIAGCGRSKYSRSKLLTHKTKNAAFTKELLKQAPGVGGVAAKCPRGLRSHFLGLQNFEYDWGGGGRRGGAVAG 684
GPLLDSSFDLLMLREPV DPTDQ++YVNRTRDK+EQR+ALR+Q+ R GCAGG GSGG XXXXXXXXXXX GQRG ENVAAA GNSAGEKTSAAP E+WT VEPLR G LVSPIT NLEREHVMAERRRLYQIDSDFAARKNAR+AGCGRS YSRSK+LTHKTKNAAFTKELLKQAPGVGGVAAKCPRGL+SHFLGLQNFEYDWGGGGRRGG V G
Sbjct: 7 GPLLDSSFDLLMLREPVVDPTDQSVYVNRTRDKIEQRRALREQQHRGGCAGGA---GSGGXXXXXXXXXX-XXXXXXXXXXXHGQRGAVENVAAAAGNSAGEKTSAAPSAAPEKWTPVEPLRAGDLVSPITTNLEREHVMAERRRLYQIDSDFAARKNARVAGCGRSNYSRSKMLTHKTKNAAFTKELLKQAPGVGGVAAKCPRGLKSHFLGLQNFEYDWGGGGRRGGGVTG 234
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-23_002590.1 |
| Exons | 4 |
| Model size | 1088 |
| Cds size | 657 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1648.4377.1 >prot_E-fasciculatus_F_contig1648.4377.1 ID=prot_E-fasciculatus_F_contig1648.4377.1|Name=mRNA_E-fasciculatus_F_contig1648.4377.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=219bp
MLREPVPDPTDQTLYVNRTRDKLEQRQALRKQERRVGCAGGVTGVGSGGA
RSAIGGGDRGGGADSSNGGVGQGQRGVEENVAAAVGNSAGEKTSAAPEQW
TLVEPLREGTLVSPITINLEREHVMAERRRLYQIDSDFAARKNARIAGCG
RSKYSRSKLLTHKTKNAAFTKELLKQAPGVGGVAAKCPRGLRSHFLGLQN
FEYDWGGGGRRGGAVAGK* back to topmRNA from alignment at E-fasciculatus_F_contig1648:14179..16986- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig1648.4377.1 ID=mRNA_E-fasciculatus_F_contig1648.4377.1|Name=mRNA_E-fasciculatus_F_contig1648.4377.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2808bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1648:14179..16986- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGCCGCTTTTGGACAGCTCCTTCGACCTCCTCATGCTCAGGGAGCCGGT
GCCGGACCCTACCGACCAGACCCTCTACGTCAACCGGACCAGGGACAAGC
TCGAGCAGAGGCAAGCGCTCCGAAAACAGGAGCGTCGGGTCGGCTGTGCC
GGTGGTGTCACCGGCGTGGGAAGCGGCGGCGCTAGAAGTGCTATTGGCGG
GGGAGACCGCGGCGGTGGCGCAGATAGCAGTAACGGAGGCGTAGGACAAG
GCCAGCGGGGCGTTGAGGAGAACGTGGCCGCCGCTGTTGGAAACAGTGCC
GGGGAGAAGACCTCAGCGGCGCCGGAACAATGGACGCTCGTTGAACCGTT
GAGGGAAGGAACCCTAGGTAAGTGAAGAGAGAGAGAGAGCAGAGCAGGCT
ACCATCAGCAAACACCTCCGTTTTTGATGCGCCTGCGGTTTACAAATAAA
TGGTTCTGACTACTAACCCCCACTGCCCCATAGGGGGTTTGCCTTGGGAG
TATGGGGACAGCGACCCAAGCATGTCTTTTGTTCTCTACTCGCTCGTCGT
TCTTTTCGTGGAATGCATGATTATGTCGATGACCACATCTGGAAGCCTGG
GGCACGAGAATATTCACACTAAATCAAGCCAAGTCGTTCGCCAAAAGCAA
GCAACAGTTCTTCATTTCCCGCTGTTCCCTTGTTACCAGTGTCGCCTATA
ACCATCAACCTGGAGCGGGAGCACGTGATGGCGGAAAGGCGCCGCCTCTA
CCAGATAGACAGGTGAGCACGGAAACAGGAGCAGTCGATGCAACACCCAC
GTTAACCTTACAGAAACTCGATGTTTTCCCCCGGACATGTAGCTTCTCAG
CTGCGAAGAACGAATCGTGCGTTCCGTAGACCCCAGGAGCAGCGGTACCA
GATTCAAAAACCTTGACAAAGAAACAATAGAAGCAAGAAAAACACACACG
CGTAGCAATGTGTCGGAGCCGAATTTTCAGCTGTCTTGCTCTTGTTGTAC
CTTTGTCTTTCGGAGTGTCATATATTTTCCCCAGACGCTGGCCCTGCACA
TGTCGAAAGTGTCGTTTTCGCTGTGTTTTTCATCGTGAGGTTCTACCCTC
GAACTCTACGAGTCAGACAAGCGGTGTCTAAACGCATTCGTCTCTGCTTG
CAAAACGAAATCACATTAGGATACGTCGTTCGACAAGCTCTCTGGTCGTT
GTCCTAACATCGATTCACAATACTCCTATGAAGGGATATGTACGAGCGTT
GCGCCAAAACAAAAGAGCGATATGCCCCGGGGACAGCAATATCTCCTGTG
TGTGAAACTTCATCAAAATAGTAGGAACGTCAAGCGCGTATGCACAAGGG
TAGATAGCAGCGCGGTCTCCTGCCGAGGGTAGGACGATGTAGATCCTTCG
ATCGCCGCGTCTTGAAAGACACAACTTTTACCGCGTCAAGTTCGCCGCGC
GAACGCGTGAACTACATATGTATACACGCAGAGGGGTGAAAAGAGTGCCA
TGATCTTCAATATGGTAGGAAGGGCGTGCGAGGTCGTTGAAGATGCCACG
GGGCTAGCTTAGGCGGGCGTACAACAGGCTGTATCCCCCCGCGCTCAAAC
GTAAAGTCTCAAACGCAAAGTCCAGAAAAGGGAAAACCGCCGCCGCCAAA
GATCTGCCGCCCAGGTACTTATTTTGTTCCATTCTTGGATGGGTGTGGAT
AAATCTGGTCATTTGCCCCCTTTCGCTTGCAGTGACTTTGCCGCCAGGAA
GAACGCGAGGATAGCCGGCTGTGGGCGGTCCAAATACTCTCGCAGCAAGG
TGAGGCAACCGCTGTGATTGTCGTCGTCGTCACCGTCACCGTCGTCGTCG
TTGCCGTCGTTGCTATTCTTGTCGTCATCGCCGCCGTTGTTATTGTTGTT
GTTGTTGTTGTTGATGTTGTTGTTGTCGGTTGGTGGTGGTAGTGGCGGTG
GTGGTGGGCATGTATTGTCACGTTATCTTCTCACCAACTTCGTGCCACTG
CAAGAATTTGAGAGGTCATCAGTACAGAGGTCCCTCTTCCCAACAGCAGA
ACCTTGGAAGGCACCCCTGTTGCGATAATCGCAATAAACGCACATACACA
TGGCGCCGTACAAGTCGAACATTACCCACGTCACCCTCACACCTGCAGAC
AACCCACACGTTTACACCAAGCCGTTATTCCCGTGAATCCCGTCCGCAAT
CAATCGTCATTATTGCGGCGTGAAAAGCTCTTGACACACAAGACCAAGAA
CGCGGCCTTCACGAAGGAACTCCTGAAGCAAGCTCCGGGTGTCGGCGGAG
TAGCAGCGAAGTGCCCGCGAGGCCTGAGATCTCACTTCCTGGGGTTGCAG
AACTTCGAGTACGATTGGGGGGGAGGGGGCCGACGAGGGGGCGCGGTGGC
TGGAAAGTGAGACTCGATCGGCCCCACCCCTCACGGCAACACGAACGAGG
ACCTTGCTGCGTTTGTGTTGTCATCTTTTGTGCCTGGGGTTTTGACGCCG
TTGGTATATGTCTGGCTGGTGTGAGTTCTGGATGCAGTCTCGACACGCGG
TTTTGACGTCTTGCTGGTGGTGCTCTGCGGCGGTGCAATTTTGCTCGGCG
CCAGGTGTTGCGCGGTATGTAGTGCTGCCCCTGGCGCCGGTGAGTGGCTA
CGTCGGCAGTTAGAGTTCGTGTCCGCGGGGCTACGAGCACCATCAAAGTG
CGTGCAGAAGTTGTTCAGCGATATCTCTCTGCTGCCAAACAAATAAGTGT
GTCCATGAGCAGGGGCTCACGACAACATACAGTACTCGCAACAGAGCGAC
GTAAATAC back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig1648:14179..16986- >mRNA_E-fasciculatus_F_contig1648.4377.1 ID=mRNA_E-fasciculatus_F_contig1648.4377.1|Name=mRNA_E-fasciculatus_F_contig1648.4377.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1314bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1648:14179..16986- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTCAGGGAGCCGGTGCCGGACCCTACCGACCAGACCCTCTACGTCAA
CCGGACCAGGGACAAGCTCGAGCAGAGGCAAGCGCTCCGAAAACAGGAGC
GTCGGGTCGGCTGTGCCGGTGGTGTCACCGGCGTGGGAAGCGGCGGCGCT
AGAAGTGCTATTGGCGGGGGAGACCGCGGCGGTGGCGCAGATAGCAGTAA
CGGAGGCGTAGGACAAGGCCAGCGGGGCGTTGAGGAGAACGTGGCCGCCG
CTGTTGGAAACAGTGCCGGGGAGAAGACCTCAGCGGCGCCGGAACAATGG
ACGCTCGTTGAACCGTTGAGGGAAGGAACCCTAGATGCTCAGGGAGCCGG
TGCCGGACCCTACCGACCAGACCCTCTACGTCAACCGGACCAGGGACAAG
CTCGAGCAGAGGCAAGCGCTCCGAAAACAGGAGCGTCGGGTCGGCTGTGC
CGGTGGTGTCACCGGCGTGGGAAGCGGCGGCGCTAGAAGTGCTATTGGCG
GGGGAGACCGCGGCGGTGGCGCAGATAGCAGTAACGGAGGCGTAGGACAA
GGCCAGCGGGGCGTTGAGGAGAACGTGGCCGCCGCTGTTGGAAACAGTGC
CGGGGAGAAGACCTCAGCGGCGCCGGAACAATGGACGCTCGTTGAACCGT
TGAGGGAAGGAACCCTAGTGTCGCCTATAACCATCAACCTGGAGCGGGAG
CACGTGATGGCGGAAAGGCGCCGCCTCTACCAGATAGACAGTGTCGCCTA
TAACCATCAACCTGGAGCGGGAGCACGTGATGGCGGAAAGGCGCCGCCTC
TACCAGATAGACAGTGACTTTGCCGCCAGGAAGAACGCGAGGATAGCCGG
CTGTGGGCGGTCCAAATACTCTCGCAGCAAGTGACTTTGCCGCCAGGAAG
AACGCGAGGATAGCCGGCTGTGGGCGGTCCAAATACTCTCGCAGCAAGCT
CTTGACACACAAGACCAAGAACGCGGCCTTCACGAAGGAACTCCTGAAGC
AAGCTCCGGGTGTCGGCGGAGTAGCAGCGAAGTGCCCGCGAGGCCTGAGA
TCTCACTTCCTGGGGTTGCAGAACTTCGAGTACGATTGGGGGGGAGGGGG
CCGACGAGGGGGCGCGGTGGCTGGAAAGTGACTCTTGACACACAAGACCA
AGAACGCGGCCTTCACGAAGGAACTCCTGAAGCAAGCTCCGGGTGTCGGC
GGAGTAGCAGCGAAGTGCCCGCGAGGCCTGAGATCTCACTTCCTGGGGTT
GCAGAACTTCGAGTACGATTGGGGGGGAGGGGGCCGACGAGGGGGCGCGG
TGGCTGGAAAGTGA back to top
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