mRNA_E-fasciculatus_F_contig16478.4376.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16478.4376.1
Unique NamemRNA_E-fasciculatus_F_contig16478.4376.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig16478.4376.1 vs. uniprot
Match: A0A6H5L9K7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9K7_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 6.430e-51
Identity = 83/90 (92.22%), Postives = 85/90 (94.44%), Query Frame = 1
Query:    4 VWSTPEVVGVAPPPRTGHSAVLLPDGHTIFVHGGWDPEDEGGAGCLRVKNFGDAYLLDTNLWEWTRGPEFLLGADEAGLRVGHTALLARC 273
            VWSTPEVVGVAPPPRTGHSAVLLPDGHTIF+HGGWDPEDEGG     VKNFGDAYLLDTNLWEWTRGPEFLLGADEAGLRVGHTA+LARC
Sbjct:  652 VWSTPEVVGVAPPPRTGHSAVLLPDGHTIFIHGGWDPEDEGG-----VKNFGDAYLLDTNLWEWTRGPEFLLGADEAGLRVGHTAVLARC 736          
BLAST of mRNA_E-fasciculatus_F_contig16478.4376.1 vs. uniprot
Match: D8LL74_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL74_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 1.460e-50
Identity = 82/90 (91.11%), Postives = 84/90 (93.33%), Query Frame = 1
Query:    4 VWSTPEVVGVAPPPRTGHSAVLLPDGHTIFVHGGWDPEDEGGAGCLRVKNFGDAYLLDTNLWEWTRGPEFLLGADEAGLRVGHTALLARC 273
            VWSTPEVVGVAPPPRTGHSAVLLPDGHTIF+HGGWDPEDEGG     VKNFGDAYLLDTNLWEWTRGPEFLLGA EAGLRVGHTA+LARC
Sbjct:  503 VWSTPEVVGVAPPPRTGHSAVLLPDGHTIFIHGGWDPEDEGG-----VKNFGDAYLLDTNLWEWTRGPEFLLGAAEAGLRVGHTAVLARC 587          
BLAST of mRNA_E-fasciculatus_F_contig16478.4376.1 vs. uniprot
Match: A0A7S2WBH9_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WBH9_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.310e-20
Identity = 43/94 (45.74%), Postives = 58/94 (61.70%), Query Frame = 1
Query:    1 WVWSTPEVVGVAPPPRTGHSAVLLPDGHTIFVHGGWDPEDEGGAGCLRVKNFGDAYLLDTNLWEWTRGPE--FLLGADEAG---LRVGHTALLA 267
            W W  P + G  P PRTGH+AVLL DG TI ++GGWDP DE      ++  F D++LLDT++W W+ GP   F+ G +       RVGH+ +LA
Sbjct:   17 WNWFQPNISGKPPSPRTGHTAVLLEDGKTILIYGGWDPTDEEEEDETQI--FDDSFLLDTDMWSWSPGPNSRFVPGTESTNGGSKRVGHSGILA 108          
BLAST of mRNA_E-fasciculatus_F_contig16478.4376.1 vs. uniprot
Match: A0A7S1D7A1_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D7A1_CYCTE)

HSP 1 Score: 86.7 bits (213), Expect = 8.150e-20
Identity = 45/95 (47.37%), Postives = 55/95 (57.89%), Query Frame = 1
Query:    1 WVWSTPEVVGVAPPPRTGHSAVLLPDGHTIFVHGGWDPEDEGGAGCLRVKNFGDAYLLDTNLWEWTRG--PEFLLGA---DEAGLRVGHTALLAR 270
            W W  P   G  P  RTGHSAVLLPD  TIF+HGGWDP  +G    +    F D++ LDT+ W W++   P FL  +   D    RVGHTA+L R
Sbjct:   31 WTWINPVAAGTIPCSRTGHSAVLLPDKKTIFIHGGWDPTVDGEEENI----FEDSFTLDTSTWTWSKASTPRFLAQSQISDGGPRRVGHTAVLCR 121          
BLAST of mRNA_E-fasciculatus_F_contig16478.4376.1 vs. uniprot
Match: A0A1Z5JA21_FISSO (Host cell factor n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JA21_FISSO)

HSP 1 Score: 81.3 bits (199), Expect = 5.490e-16
Identity = 40/86 (46.51%), Postives = 54/86 (62.79%), Query Frame = 1
Query:    7 WSTPEVVGVAPPPRTGHSAVLLPDGHTIFVHGGWDPEDEGGAGCLRVKNFGDAYLLDTNLWEWTRGPEFLLGADEAGLRVGHTALL 264
            WS  +  G  P PRTGH A +  D  TI ++GGWDP DE          F D++LL+T  WEWT+GP+  +G+D++G RVGH A+L
Sbjct:  405 WSNVQTKGTPPCPRTGHVAFVWHD-DTICIYGGWDPNDENDV------VFADSFLLNTETWEWTKGPK--IGSDDSGARVGHRAVL 481          
BLAST of mRNA_E-fasciculatus_F_contig16478.4376.1 vs. uniprot
Match: A0A4D9CV08_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CV08_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 2.700e-15
Identity = 45/95 (47.37%), Postives = 55/95 (57.89%), Query Frame = 1
Query:    1 WVWSTPEVVGV-APPPRTGHSAVLLPDGHTIFVHGGWDPEDEGGAGCLRVKNFGDAYLLDTNLWEW-TRGPEFLLGADEA---GLRVGHTALLAR 270
            W W  P VVG   P  RTGH+A LL DG +I+V GGWDP+DE          F DA++LDT  WEW   G E   G  +    G+ VGHTA++AR
Sbjct:  524 WEWFHPMVVGCDRPAKRTGHAACLLQDGKSIWVQGGWDPQDETSE---ETTLFEDAFILDTETWEWRAAGAEVGAGEQQEEGPGVVVGHTAVVAR 615          
BLAST of mRNA_E-fasciculatus_F_contig16478.4376.1 vs. uniprot
Match: W2M544_PHYPR (Uncharacterized protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2M544_PHYPR)

HSP 1 Score: 79.0 bits (193), Expect = 3.640e-15
Identity = 45/90 (50.00%), Postives = 52/90 (57.78%), Query Frame = 1
Query:    1 WVWSTPEVVGVAPPPRTGHSAVLLPDGHTIFVHGGWDPEDEGGAGCLRVKNFGDAYLLDTNLWEWTRGPEFLLGADEAGLR--VGHTALL 264
            W W  P VVGV P  RTGHSA LL DG  I V GGWDP+ +  +    V  F DA+LLDTN WEW        G+ +  LR  VGH A+L
Sbjct:  436 WSWFHPCVVGVPPQERTGHSATLLSDGK-ILVFGGWDPQRDDASAPTSV--FSDAFLLDTNTWEWQPAAYTDEGSADTALRGRVGHGAVL 522          
BLAST of mRNA_E-fasciculatus_F_contig16478.4376.1 vs. uniprot
Match: A0A484DUM7_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DUM7_BRELC)

HSP 1 Score: 75.9 bits (185), Expect = 4.370e-14
Identity = 43/88 (48.86%), Postives = 50/88 (56.82%), Query Frame = 1
Query:    1 WVWSTPEVVGVAPPPRTGHSAVLLPDGHTIFVHGGWDPEDEGGAGCLRVKNFGDAYLLDTNLWEWTRGPEFLLGADEAGLRVGHTALL 264
            W W  P V GV P  RTGHSA LL DG+ +FV GGWDP+   G        F DA++LDT  WEW   P F  G   +  RVGH A+L
Sbjct:  407 WTWVYPNVTGVPPQERTGHSATLLKDGN-LFVFGGWDPQR--GDVNAPTSVFDDAFILDTKTWEWQPVP-FNDGRITSRGRVGHGAVL 490          
BLAST of mRNA_E-fasciculatus_F_contig16478.4376.1 vs. uniprot
Match: A0A3F2S1K7_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S1K7_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.130e-13
Identity = 40/90 (44.44%), Postives = 51/90 (56.67%), Query Frame = 1
Query:    1 WVWSTPEVVGVAPPPRTGHSAVLLPDGHTIFVHGGWDPEDEGGAGCLRVKNFGDAYLLDTNLWEWTRGPEFLLGADEAGLR--VGHTALL 264
            W W  P VVGV P  RTGHS+ LL +G  I + GGWDP+ +  +    V  F DA+LLDT  W+W         + E  LR  VGH+A+L
Sbjct:  442 WKWDEPTVVGVPPQARTGHSSTLLQNGK-ILIFGGWDPQRDDASSPTSV--FDDAFLLDTQSWQWEPATFAETSSTEGALRGRVGHSAVL 528          
BLAST of mRNA_E-fasciculatus_F_contig16478.4376.1 vs. uniprot
Match: A0A3R7IR84_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7IR84_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 2.680e-13
Identity = 39/90 (43.33%), Postives = 51/90 (56.67%), Query Frame = 1
Query:    1 WVWSTPEVVGVAPPPRTGHSAVLLPDGHTIFVHGGWDPEDEGGAGCLRVKNFGDAYLLDTNLWEWTRGPEFLLGADEAGLR--VGHTALL 264
            W W  P VVG+ P  RTGHS+ LL +G  I + GGWDP+ +  +    V  F DA+LLDT  W+W         + E  LR  VGH+A+L
Sbjct:  289 WKWDEPTVVGLPPQARTGHSSTLLQNGK-ILIFGGWDPQRDDASSPTSV--FDDAFLLDTQSWQWEPATFAETSSTEGALRGRVGHSAVL 375          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16478.4376.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A6H5L9K7_9PHAE6.430e-5192.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LL74_ECTSI1.460e-5091.11Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A7S2WBH9_9STRA1.310e-2045.74Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S1D7A1_CYCTE8.150e-2047.37Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A1Z5JA21_FISSO5.490e-1646.51Host cell factor n=2 Tax=Fistulifera solaris TaxID... [more]
A0A4D9CV08_9STRA2.700e-1547.37Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W2M544_PHYPR3.640e-1550.00Uncharacterized protein n=8 Tax=Phytophthora TaxID... [more]
A0A484DUM7_BRELC4.370e-1448.86Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A3F2S1K7_9STRA1.130e-1344.44Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
A0A3R7IR84_9STRA2.680e-1343.33Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16478contigE-fasciculatus_F_contig16478:2061..2712 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score179.9
Seed ortholog evalue5.5e-43
Seed eggNOG ortholog2880.D8LL74
KEGG koko:K20285
EggNOG free text desc.nitrile biosynthetic process
EggNOG OGsKOG0379@1,KOG0379@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size273
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928116.840713-CDS-E-fasciculatus_F_contig16478:2060..21911622928116.840713-CDS-E-fasciculatus_F_contig16478:2060..2191Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16478 2061..2191 -
1695995825.4103575-CDS-E-fasciculatus_F_contig16478:2060..21911695995825.4103575-CDS-E-fasciculatus_F_contig16478:2060..2191Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16478 2061..2191 -
1622928116.8549173-CDS-E-fasciculatus_F_contig16478:2570..27121622928116.8549173-CDS-E-fasciculatus_F_contig16478:2570..2712Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16478 2571..2712 -
1695995825.4229279-CDS-E-fasciculatus_F_contig16478:2570..27121695995825.4229279-CDS-E-fasciculatus_F_contig16478:2570..2712Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16478 2571..2712 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16478.4376.1prot_E-fasciculatus_F_contig16478.4376.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16478 2061..2712 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16478.4376.1

>prot_E-fasciculatus_F_contig16478.4376.1 ID=prot_E-fasciculatus_F_contig16478.4376.1|Name=mRNA_E-fasciculatus_F_contig16478.4376.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=91bp
WVWSTPEVVGVAPPPRTGHSAVLLPDGHTIFVHGGWDPEDEGGAGCLRVK
NFGDAYLLDTNLWEWTRGPEFLLGADEAGLRVGHTALLARC
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mRNA from alignment at E-fasciculatus_F_contig16478:2061..2712-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16478.4376.1 ID=mRNA_E-fasciculatus_F_contig16478.4376.1|Name=mRNA_E-fasciculatus_F_contig16478.4376.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=652bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16478:2061..2712- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGGGTATGGTCGACGCCGGAGGTGGTGGGAGTAGCACCACCCCCCCGCAC CGGGCATTCTGCGGTGCTCCTGCCGGACGGGCACACGATCTTCGTCCACG GGGGATGGGACCCGGAAGACGAAGGAGGTGCGGGGTGTCTCCGTGCCGTG CAACGTTTTTTACTGGCGGTATTTTGTTGTTGTGGTTGTTGATGATGTTG ATGTTGATGTGACCTTTTGGACTAAATACGCAGCAGCAGCCAGCAGACGA CGTGTGTGCGTTTCGAATCGGTTGAACGTTTTGTTTCTCTTGTTCTTACA ACATGACAACGAATATATCCCTATACACGCACAGATCAACAGCCCAGGAT AGGTTAGCAACGTTTCCTCTACATAATCACGTGCATTTTCTTCTCTGCAC TCATGTGATGACAAAATGCAGTTGTGTGTGTGTGTTTGTTTTCAGTTTTG GGAACTCAATTTTTGGTTATTTGTTCAATTTTTTGGAAACACAACATCCT CACTTTTTTTTTCAATTTCAGGGGTGAAAAACTTCGGGGACGCCTACCTG CTGGACACGAACCTCTGGGAGTGGACCCGCGGGCCGGAGTTCTTGCTCGG AGCGGACGAGGCGGGGCTCAGGGTGGGACACACGGCCCTACTTGCCCGCT GC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16478:2061..2712-

>mRNA_E-fasciculatus_F_contig16478.4376.1 ID=mRNA_E-fasciculatus_F_contig16478.4376.1|Name=mRNA_E-fasciculatus_F_contig16478.4376.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=546bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16478:2061..2712- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGGGTATGGTCGACGCCGGAGGTGGTGGGAGTAGCACCACCCCCCCGCAC
CGGGCATTCTGCGGTGCTCCTGCCGGACGGGCACACGATCTTCGTCCACG
GGGGATGGGACCCGGAAGACGAAGGAGGTGCGGGGTGTCTCCTGGGTATG
GTCGACGCCGGAGGTGGTGGGAGTAGCACCACCCCCCCGCACCGGGCATT
CTGCGGTGCTCCTGCCGGACGGGCACACGATCTTCGTCCACGGGGGATGG
GACCCGGAAGACGAAGGAGGTGCGGGGTGTCTCCGGGTGAAAAACTTCGG
GGACGCCTACCTGCTGGACACGAACCTCTGGGAGTGGACCCGCGGGCCGG
AGTTCTTGCTCGGAGCGGACGAGGCGGGGCTCAGGGTGGGACACACGGCC
CTACTTGCCCGCTGCGGGTGAAAAACTTCGGGGACGCCTACCTGCTGGAC
ACGAACCTCTGGGAGTGGACCCGCGGGCCGGAGTTCTTGCTCGGAGCGGA
CGAGGCGGGGCTCAGGGTGGGACACACGGCCCTACTTGCCCGCTGC
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