mRNA_E-fasciculatus_F_contig16476.4375.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-fasciculatus_F_contig16476.4375.1
Unique Name	mRNA_E-fasciculatus_F_contig16476.4375.1
Type	mRNA
Organism	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)

Homology

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BLAST of mRNA_E-fasciculatus_F_contig16476.4375.1 vs. uniprot
Match: A0A6H5JIA2_9PHAE (Exocyst complex component Sec8 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JIA2_9PHAE)

HSP 1 Score: 233 bits (595), Expect = 1.090e-68
Identity = 122/130 (93.85%), Postives = 123/130 (94.62%), Query Frame = 1

Query:   10 RPFNQVIEILSVSLDQXXXXXXXESPDYDRLAGNPLHNNIQRQLQVCSDVVERITVEHHGSLNSSVQAMGGVARHYNQTRANVGTLREQLRECKQLLQTGSSQTDVRELWQRKLQYSLVLRLLNALDMIK 399
            RPFNQVIEILSVSLDQ       ESPDYDRLAGNPLHNNIQRQLQVCSDVVERITVEHHGSLNSSVQAMGGVARHYNQTRANVGTLREQLRECKQLLQ+GSSQTDVRELWQRKLQYSLVLRLLNALDMIK
Sbjct:   44 RPFNQVIEILSVSLDQDNDID--ESPDYDRLAGNPLHNNIQRQLQVCSDVVERITVEHHGSLNSSVQAMGGVARHYNQTRANVGTLREQLRECKQLLQSGSSQTDVRELWQRKLQYSLVLRLLNALDMIK 171

[Close]

BLAST of mRNA_E-fasciculatus_F_contig16476.4375.1 vs. uniprot
Match: A0A835YXP6_9STRA (Exocyst complex component Sec8 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXP6_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 6.150e-20
Identity = 46/62 (74.19%), Postives = 52/62 (83.87%), Query Frame = 1

Query:  214 MGGVARHYNQTRANVGTLREQLRECKQLLQTGSSQTDVRELWQRKLQYSLVLRLLNALDMIK 399
            MG V  HYN+TR+NVGTLREQ+RECK LLQ GS Q DVRELWQRK QY+ VLRLL+ LDM+K
Sbjct:    1 MGAVTEHYNKTRSNVGTLREQIRECKGLLQNGSQQADVRELWQRKAQYAQVLRLLDMLDMVK 62

The following BLAST results are available for this feature:

BLAST of mRNA_E-fasciculatus_F_contig16476.4375.1 vs. uniprot

BLAST of mRNA_E-fasciculatus_F_contig16476.4375.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5JIA2_9PHAE	1.090e-68	93.85	Exocyst complex component Sec8 n=2 Tax=Ectocarpus ...	[more]
A0A835YXP6_9STRA	6.150e-20	74.19	Exocyst complex component Sec8 n=1 Tax=Tribonema m...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-fasciculatus_F_contig16476	contig	E-fasciculatus_F_contig16476:2102..2512 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	120.9
Seed ortholog evalue	4.5e-25
Seed eggNOG ortholog	2880.D7G446
Preferred name	EXOC4
KEGG ko	ko:K01262,ko:K06111
GOs	GO:0000003,GO:0000131,GO:0000145,GO:0000212,GO:0000226,GO:0000910,GO:0000916,GO:0000920,GO:0000922,GO:0001505,GO:0001667,GO:0001704,GO:0001707,GO:0002064,GO:0002065,GO:0002066,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005628,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0005886,GO:0005902,GO:0005933,GO:0005934,GO:0005935,GO:0005937,GO:0005938,GO:0006605,GO:0006612,GO:0006810,GO:0006836,GO:0006886,GO:0006887,GO:0006892,GO:0006893,GO:0006897,GO:0006903,GO:0006904,GO:0006928,GO:0006996,GO:0007009,GO:0007010,GO:0007017,GO:0007029,GO:0007030,GO:0007049,GO:0007051,GO:0007110,GO:0007111,GO:0007154,GO:0007163,GO:0007267,GO:0007268,GO:0007269,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007292,GO:0007297,GO:0007298,GO:0007369,GO:0007399,GO:0007417,GO:0007498,GO:0008104,GO:0008150,GO:0008582,GO:0009653,GO:0009790,GO:0009887,GO:0009888,GO:0009894,GO:0009925,GO:0009966,GO:0009967,GO:0009987,GO:0010001,GO:0010256,GO:0010506,GO:0010631,GO:0010646,GO:0010647,GO:0010927,GO:0014069,GO:0015031,GO:0015630,GO:0015833,GO:0016020,GO:0016028,GO:0016043,GO:0016079,GO:0016080,GO:0016081,GO:0016192,GO:0016241,GO:0016323,GO:0016324,GO:0016477,GO:0017016,GO:0017156,GO:0017160,GO:0019222,GO:0019899,GO:0019904,GO:0019953,GO:0022008,GO:0022402,GO:0022406,GO:0022412,GO:0022413,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0023061,GO:0030010,GO:0030029,GO:0030036,GO:0030154,GO:0030165,GO:0030424,GO:0030425,GO:0030426,GO:0030427,GO:0030435,GO:0030437,GO:0030707,GO:0030855,GO:0030865,GO:0030866,GO:0031032,GO:0031252,GO:0031267,GO:0031321,GO:0031323,GO:0031329,GO:0032120,GO:0032153,GO:0032279,GO:0032501,GO:0032502,GO:0032504,GO:0032505,GO:0032506,GO:0032584,GO:0032879,GO:0032880,GO:0032940,GO:0032989,GO:0032991,GO:0033036,GO:0033206,GO:0033267,GO:0034293,GO:0034613,GO:0035748,GO:0036213,GO:0036477,GO:0040008,GO:0040011,GO:0042063,GO:0042763,GO:0042764,GO:0042886,GO:0042995,GO:0043005,GO:0043025,GO:0043198,GO:0043209,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043332,GO:0043934,GO:0043935,GO:0044085,GO:0044087,GO:0044089,GO:0044091,GO:0044297,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0044703,GO:0044837,GO:0044877,GO:0045055,GO:0045177,GO:0045178,GO:0045184,GO:0045202,GO:0045887,GO:0045927,GO:0046903,GO:0046907,GO:0047485,GO:0048193,GO:0048232,GO:0048278,GO:0048308,GO:0048309,GO:0048313,GO:0048332,GO:0048339,GO:0048340,GO:0048341,GO:0048468,GO:0048477,GO:0048489,GO:0048513,GO:0048515,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048598,GO:0048609,GO:0048638,GO:0048639,GO:0048646,GO:0048709,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0050848,GO:0050850,GO:0051020,GO:0051049,GO:0051094,GO:0051128,GO:0051130,GO:0051179,GO:0051223,GO:0051234,GO:0051239,GO:0051240,GO:0051285,GO:0051286,GO:0051301,GO:0051321,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051674,GO:0051704,GO:0051960,GO:0051962,GO:0051963,GO:0051965,GO:0055108,GO:0060429,GO:0060485,GO:0061024,GO:0061640,GO:0061982,GO:0061983,GO:0065007,GO:0065008,GO:0070177,GO:0070201,GO:0070727,GO:0071702,GO:0071705,GO:0071709,GO:0071840,GO:0071944,GO:0072132,GO:0072657,GO:0072687,GO:0090087,GO:0090130,GO:0090132,GO:0090150,GO:0090522,GO:0090619,GO:0090723,GO:0097447,GO:0097458,GO:0097479,GO:0097480,GO:0098590,GO:0098657,GO:0098794,GO:0098858,GO:0098876,GO:0098916,GO:0098984,GO:0099003,GO:0099022,GO:0099023,GO:0099504,GO:0099536,GO:0099537,GO:0099568,GO:0099572,GO:0099643,GO:0099738,GO:0120025,GO:0120038,GO:0140029,GO:0140056,GO:0150034,GO:1902531,GO:1902533,GO:1903046,GO:1904396,GO:1904398,GO:2000026
EggNOG free text desc.	vesicle docking involved in exocytosis
EggNOG OGs	KOG3691@1,KOG3691@2759
EC	3.4.11.9
COG Functional cat.	E
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko01000,ko01002,ko04131
Hectar predicted targeting category	other localisation
Exons	1
Model size	411
Cds size	411
Stop	1
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928116.8047626-CDS-E-fasciculatus_F_contig16476:2101..2512	1622928116.8047626-CDS-E-fasciculatus_F_contig16476:2101..2512	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig16476 2102..2512 +
1695995825.39058-CDS-E-fasciculatus_F_contig16476:2101..2512	1695995825.39058-CDS-E-fasciculatus_F_contig16476:2101..2512	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig16476 2102..2512 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E-fasciculatus_F_contig16476.4375.1	prot_E-fasciculatus_F_contig16476.4375.1	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	polypeptide	E-fasciculatus_F_contig16476 2102..2512 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-fasciculatus_F_contig16476:2102..2512+
coding sequence from alignment at E-fasciculatus_F_contig16476:2102..2512+

protein sequence of mRNA_E-fasciculatus_F_contig16476.4375.1

>prot_E-fasciculatus_F_contig16476.4375.1 ID=prot_E-fasciculatus_F_contig16476.4375.1|Name=mRNA_E-fasciculatus_F_contig16476.4375.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=137bp
RRHRPFNQVIEILSVSLDQDQDQDNDESPDYDRLAGNPLHNNIQRQLQVC
SDVVERITVEHHGSLNSSVQAMGGVARHYNQTRANVGTLREQLRECKQLL
QTGSSQTDVRELWQRKLQYSLVLRLLNALDMIKVRR*

mRNA from alignment at E-fasciculatus_F_contig16476:2102..2512+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-fasciculatus_F_contig16476.4375.1 ID=mRNA_E-fasciculatus_F_contig16476.4375.1|Name=mRNA_E-fasciculatus_F_contig16476.4375.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=411bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16476:2102..2512+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGACGGCACAGGCCCTTCAATCAGGTGATCGAGATCCTGAGTGTCAGTCT
TGATCAAGATCAAGATCAAGACAACGACGAGAGCCCCGACTACGACCGGT
TGGCGGGTAACCCTCTTCACAACAACATCCAGCGACAGCTGCAAGTGTGC
AGCGATGTGGTCGAGCGCATCACTGTGGAGCACCATGGTAGTCTAAACAG
TTCCGTCCAAGCGATGGGTGGGGTGGCAAGACATTACAATCAGACCCGCG
CCAACGTTGGTACCCTCAGAGAGCAACTCCGGGAGTGCAAACAACTGCTG
CAAACCGGCTCGAGTCAGACCGACGTTCGGGAACTGTGGCAGCGCAAACT
TCAGTATTCACTTGTTCTCCGGCTACTGAATGCCCTTGATATGATTAAGG
TACGAAGGTGA

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16476:2102..2512+

>mRNA_E-fasciculatus_F_contig16476.4375.1 ID=mRNA_E-fasciculatus_F_contig16476.4375.1|Name=mRNA_E-fasciculatus_F_contig16476.4375.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=822bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16476:2102..2512+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGACGGCACAGGCCCTTCAATCAGGTGATCGAGATCCTGAGTGTCAGTCT
TGATCAAGATCAAGATCAAGACAACGACGAGAGCCCCGACTACGACCGGT
TGGCGGGTAACCCTCTTCACAACAACATCCAGCGACAGCTGCAAGTGTGC
AGCGATGTGGTCGAGCGCATCACTGTGGAGCACCATGGTAGTCTAAACAG
TTCCGTCCAAGCGATGGGTGGGGTGGCAAGACATTACAATCAGACCCGCG
CCAACGTTGGTACCCTCAGAGAGCAACTCCGGGAGTGCAAACAACTGCTG
CAAACCGGCTCGAGTCAGACCGACGTTCGGGAACTGTGGCAGCGCAAACT
TCAGTATTCACTTGTTCTCCGGCTACTGAATGCCCTTGATATGATTAAGG
TACGAAGGTGACGACGGCACAGGCCCTTCAATCAGGTGATCGAGATCCTG
AGTGTCAGTCTTGATCAAGATCAAGATCAAGACAACGACGAGAGCCCCGA
CTACGACCGGTTGGCGGGTAACCCTCTTCACAACAACATCCAGCGACAGC
TGCAAGTGTGCAGCGATGTGGTCGAGCGCATCACTGTGGAGCACCATGGT
AGTCTAAACAGTTCCGTCCAAGCGATGGGTGGGGTGGCAAGACATTACAA
TCAGACCCGCGCCAACGTTGGTACCCTCAGAGAGCAACTCCGGGAGTGCA
AACAACTGCTGCAAACCGGCTCGAGTCAGACCGACGTTCGGGAACTGTGG
CAGCGCAAACTTCAGTATTCACTTGTTCTCCGGCTACTGAATGCCCTTGA
TATGATTAAGGTACGAAGGTGA