mRNA_E-fasciculatus_F_contig16475.4374.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16475.4374.1
Unique NamemRNA_E-fasciculatus_F_contig16475.4374.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig16475.4374.1 vs. uniprot
Match: D8LM90_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM90_ECTSI)

HSP 1 Score: 397 bits (1020), Expect = 1.140e-136
Identity = 221/298 (74.16%), Postives = 231/298 (77.52%), Query Frame = 1
Query:    1 GWREHVEVPGPPLVNPVVIPSGCAEHANIYAIYAVDSRQASSREVLNALLMEPRFLSMTPDTGLADLTAEETGRFVRTLA-----------------------------------------RHQASVEGKSDLESAAFLLVTGVWAPGSLIESPVLYTKDDGTQVTDYPRSLALWAGTTDGARLADDEAERQQYWASFRQAIRQAEHRLGQQXXXXXXXKDAPVQATE-EEGAQRANDGGSGDGVTTAARPLSECRSQARYGSGPDTVRMGREYTEGELLKIVPQVFGVRPTAGSQEL 768
            GWRE+VE PGPPLVNPVV+PSGCAEHANIYAIYAVDSRQ     VLNALLMEPRFLSMTPDTGL DLTAEETGRFVRTL                                          RHQASVEGKSDLESAAFLLVTGVWAPG LIESPVLYTK+DGT+VTDYPRSLALWAGTTDGARL DD+AERQQYWASFRQAIRQAEHRLGQQ       +DA VQATE EE AQRA+DG  GD VTTAARP+SECRSQARYGSGPD VRMG+EYT GELL+IVPQVFGVRP AGSQEL
Sbjct:   58 GWREYVEEPGPPLVNPVVVPSGCAEHANIYAIYAVDSRQ-----VLNALLMEPRFLSMTPDTGLVDLTAEETGRFVRTLVSVVVVEVVVVVRRFSWTTHEPKSRHSDACCCRFQSCFVPPPRHQASVEGKSDLESAAFLLVTGVWAPGGLIESPVLYTKEDGTKVTDYPRSLALWAGTTDGARLDDDDAERQQYWASFRQAIRQAEHRLGQQQEQ----RDAFVQATEQEEEAQRADDG-FGD-VTTAARPVSECRSQARYGSGPDMVRMGKEYTAGELLQIVPQVFGVRPAAGSQEL 344          
BLAST of mRNA_E-fasciculatus_F_contig16475.4374.1 vs. uniprot
Match: A0A6H5KHN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN6_9PHAE)

HSP 1 Score: 321 bits (822), Expect = 7.510e-109
Identity = 175/199 (87.94%), Postives = 177/199 (88.94%), Query Frame = 1
Query:  172 MTPDTGLADLTAEETGRFVRTLARHQASVEGKSDLESAAFLLVTGVWAPGSLIESPVLYTKDDGTQVTDYPRSLALWAGTTDGARLADDEAERQQYWASFRQAIRQAEHRLGQQXXXXXXXKDAPVQATEEEGAQRANDGGSGDGVTTAARPLSECRSQARYGSGPDTVRMGREYTEGELLKIVPQVFGVRPTAGSQEL 768
            MTPDTGL DLTAEETGRF RTLARHQASVEGKSDLESAAFLLVTGVWAPGSLIESPVLYTK DGTQVTDYPRSLALWAGTTDGARLADD AERQQY  S RQAIRQAEHRLGQQ       KDA VQATEEE AQRA D GSGD VTTAARPLSECRSQARYGSGPD VRMG+EYT GELL+IVPQVFGVRP AGSQEL
Sbjct:    1 MTPDTGLVDLTAEETGRFARTLARHQASVEGKSDLESAAFLLVTGVWAPGSLIESPVLYTKGDGTQVTDYPRSLALWAGTTDGARLADDNAERQQYSESLRQAIRQAEHRLGQQQER----KDALVQATEEE-AQRA-DNGSGD-VTTAARPLSECRSQARYGSGPDMVRMGKEYTAGELLQIVPQVFGVRPAAGSQEL 192          
BLAST of mRNA_E-fasciculatus_F_contig16475.4374.1 vs. uniprot
Match: A0A1Z5K0G4_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K0G4_FISSO)

HSP 1 Score: 151 bits (381), Expect = 1.240e-40
Identity = 95/258 (36.82%), Postives = 133/258 (51.55%), Query Frame = 1
Query:    1 GWREHVEVPGPPLVNPVVIPSGCAEHANIYAIYAVDSRQASSREVLNALLMEPRFLSMTPDTGLADLTAEETGRFVRTLARHQASVEGKSDLESAAFLLVTGVW-APGSLIESPVLYTKDDGTQVTDYPRSLALWAGTTDGARLA---DDEAER----------QQYWASFRQAIRQAEHRLGQQXXXXXXXKDAPVQATEEEGAQRANDGGSGDGVTTAARPLSECRSQARYGSGPDTVRMGREYTEGELLKIVPQV 732
            GWR+++E PG PL+N  V P+GC EHAN Y IY +D+RQ     V+  L  EPRFLS+TPDTG+ DL A ET   VR L  +    +GKSD E  A  LVT VW    S + SP +   DDGTQ+T++P SLALWA  +D  R A   +D +++          Q+YW   R+A+R AE  L +                      +  D G          P   C+ + R+G G DT R+   ++  ++ +++  V
Sbjct:   81 GWRQYIEEPGQPLINSNVFPTGCYEHANEYWIYLIDARQ-----VMAVLNNEPRFLSITPDTGMVDLQAGETTPVVRALFTNIIQQQGKSDFERVAIPLVTAVWFQKESHVPSPPIRIHDDGTQITNFPESLALWANVSDADRTALVQEDCSDQTCSAEALQRVQRYWDGIRRAVRHAEQSLAE---------------------LKEVDYG----------PPFSCQKKVRFGVGNDTARINDPFSSEQMTELLQSV 302          
BLAST of mRNA_E-fasciculatus_F_contig16475.4374.1 vs. uniprot
Match: A0A1Z5K7B1_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K7B1_FISSO)

HSP 1 Score: 147 bits (371), Expect = 8.650e-40
Identity = 84/173 (48.55%), Postives = 102/173 (58.96%), Query Frame = 1
Query:    1 GWREHVEVPGPPLVNPVVIPSGCAEHANIYAIYAVDSRQASSREVLNALLMEPRFLSMTPDTGLADLTAEETGRFVRTLARHQASVEGKSDLESAAFLLVTGVW-APGSLIESPVLYTKDDGTQVTDYPRSLALWAGTTDGARLADDE--------AER----QQYWASFRQA 480
            GWR+++E PG PL+N  V PSGC EHAN Y IY +DSRQ     V+  L  EPRFLS+TPDTG+ DL AEET   VR L       +GKSDLE  A  LVT VW    S + SP +   +DGT +T++P SLALWA  +D  R A  E        AE     Q+YW   R+A
Sbjct:   81 GWRQYIEEPGQPLINSNVFPSGCYEHANEYWIYLIDSRQ-----VMAVLNNEPRFLSITPDTGMVDLRAEETSPVVRALLEQMIQQQGKSDLEQVAIPLVTAVWFQKESHVPSPPIRIHEDGTYITNFPESLALWANVSDADRTALQEECADQTCSAEALQRVQRYWDGIRRA 248          
BLAST of mRNA_E-fasciculatus_F_contig16475.4374.1 vs. uniprot
Match: B7G1X2_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G1X2_PHATC)

HSP 1 Score: 139 bits (351), Expect = 5.000e-36
Identity = 93/266 (34.96%), Postives = 121/266 (45.49%), Query Frame = 1
Query:    1 GWREHVEVPGPPLVNPVVIPSGCAEHANIYAIYAVDSRQASSREVLNALLMEPRFLSMTPDTGLADLTAEETGRFVRTLARHQASVEGKSDLESAAFLLVTGVWAPGSLIESPVLYTKDDGTQVTDYPRSLALWAGTTDGARLADDE--------------------------AERQQYWASFRQAIRQAEHRLGQQXXXXXXXKDAPVQATEEEGAQRANDGGSGDGVTTAARPLSECRSQARYGSGPDTVRMGREYTEGELLKI 720
            GWR++   PG PL+N VV+ SGC EHAN Y IYAVDSRQ     VL  L  EPRFLS+TPDTGL DLT  ET + V+ LA+ Q   +GK +    +F +V   W   S + SP +    DGT +T++P SLALWA   D  R+   +                          A +++YW   R A+R AE              D P +                  V  A  P   C   AR G   DT R+   ++  EL  +
Sbjct:   78 GWRQYTSEPGQPLINSVVVVSGCHEHANQYWIYAVDSRQ-----VLAVLNNEPRFLSITPDTGLVDLTVAETDKAVKVLAQSQIQKQGKRNTTHVSFPIVVATWYHESFLPSPPMRHLPDGTAITNFPASLALWAKVNDADRVTGCDYTPTDSSSSIGSNNTVEECEASSRTLAAQRRYWDGIRSAVRAAE-------------ADRPSRD-----------------VWRANGPPFACERLARLGVDADTARINYSFSAEELHSV 308          
BLAST of mRNA_E-fasciculatus_F_contig16475.4374.1 vs. uniprot
Match: A0A1H8DWD8_9PROT (Uncharacterized protein n=2 Tax=Nitrosomonas marina TaxID=917 RepID=A0A1H8DWD8_9PROT)

HSP 1 Score: 132 bits (333), Expect = 7.880e-34
Identity = 77/167 (46.11%), Postives = 100/167 (59.88%), Query Frame = 1
Query:    1 GWREHVEVPGPPLVNPVVIPSGCAEHANIYAIYAVDSRQASSREVLNALLMEPRFLSMTPDTGLADLTAEETGRFVRTLARHQASVEGKSDLES---AAFLLVTGVWAPGSLIESPVLYTKDDGTQVTDYPRSLALWAGTTDGARLADDEAERQQYWASFRQAIRQA 492
            GWRE+   P    VNP +I +G    ANIY+IY VD RQ     ++ ALL EPRFLSMTPDT L D  AEET   V++L  +Q   +GK+ + +   AAFL V  VW     + SP+LY K DGT+VTD+P SLA +AG +D  R  D EA    Y  +   A+++A
Sbjct:  114 GWREYRAEPAINPVNPAMIATGDRNDANIYSIYGVDRRQ-----LVTALLNEPRFLSMTPDTALVDRNAEETYETVKSLITNQILNDGKASVTNKNEAAFLTVVSVWHSRHFVPSPILYIKKDGTRVTDFPNSLAAFAGISDQLRTEDPEA----YHVAVEAAVKKA 271          
BLAST of mRNA_E-fasciculatus_F_contig16475.4374.1 vs. uniprot
Match: A0A7S3LEC9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LEC9_9STRA)

HSP 1 Score: 129 bits (323), Expect = 1.090e-32
Identity = 84/179 (46.93%), Postives = 102/179 (56.98%), Query Frame = 1
Query:    1 GWREHVEVPGPPLV-NPVVIPSGCAEHANIYAIYAVDSRQASSREVLNALLMEPRFLSMTPDTGLADLTAEETGRFVRTLARHQASVEGKSDLESAAFLLVTGVWAPG-SLIESPVLYTKDDGTQVTDYPRSLALWAG--TTDGARLADDE----------AERQQYWASFRQAIRQAE 495
            G+RE+   P PP V NPV+IP+GC   ANIY +Y V S+Q     VL+ L  EPRFLS+TPDTGL DL A ET   VR LA  Q    G ++ +  A  LVTGVW    S +ESP  Y  +DGT+VT Y  SLALW G  T D   +A+D+          A R Q W +    IR AE
Sbjct:   35 GYREYKAEPYPPKVPNPVIIPTGCYHDANIYWLYLVKSQQ-----VLHILAGEPRFLSITPDTGLVDLKAAETSDAVRQLALGQIQKHGFTNTDVFALPLVTGVWFDAASFVESPPAYLHEDGTRVTSYADSLALWTGVQTDDLLVVAEDDDGDGEGDTNMARRSQAWDAVYDKIRTAE 208          
BLAST of mRNA_E-fasciculatus_F_contig16475.4374.1 vs. uniprot
Match: B7G1J3_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G1J3_PHATC)

HSP 1 Score: 124 bits (311), Expect = 1.470e-30
Identity = 74/165 (44.85%), Postives = 98/165 (59.39%), Query Frame = 1
Query:    1 GWREHVEVPGPPLVNPVVIPSGCAEHANIYAIYAVDSRQASSREVLNALLMEPRFLSMTPDTGLADLTAEETGRFVRTLARHQASVEGKSDLESAAFLLVTGVWAPGSLIESPVLYTKDDGTQVTDYPRSLALWAGTTDGARLADDEAERQQYWASFRQAIRQAE 495
            G+RE+ E   P + N VV+P+GCA HANIY ++ V +       +LN L  EPRFLS+TPDTGL DL A+ET   VR +AR     + K D    A  LVTGVW   + +ESP +Y +D GT+VT +   LA+WAG  +   L D +A     WA+    IRQ+E
Sbjct:   81 GFREYREANPPTVPNAVVMPTGCAAHANIYHVFFVPTPV-----LLNVLAGEPRFLSITPDTGLVDLQADETSDTVRRVARSVIKAQHKRDDSRVAIPLVTGVWFHDTFVESPPVYVRD-GTKVTSFDGGLAVWAGV-EREDLVDADATA---WANVHTKIRQSE 235          
BLAST of mRNA_E-fasciculatus_F_contig16475.4374.1 vs. uniprot
Match: A0A813DXW5_POLGL (Hypothetical protein (Fragment) n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813DXW5_POLGL)

HSP 1 Score: 115 bits (289), Expect = 1.930e-27
Identity = 65/141 (46.10%), Postives = 86/141 (60.99%), Query Frame = 1
Query:    7 REHVEVP-GPPLVNPVVIPSGCAEHANIYAIYAVDSRQASSREVLNALLMEPRFLSMTPDTGLADLTAEETGRFVRTLARHQASVEGKSDLESAAFLLVTGVWAPGSLIESPVLYTKDDGTQVTDYPRSLALWAGTTDGAR 426
            RE+V    G   VNP ++ +GC EHAN+YA+Y    + A     L ALL EPR+LSM+PD    DL AEET   ++ L +   S +GK++ E  A L V  V+   S +E+PVLYTK DGTQVT++   LA  AGT+D  R
Sbjct:   79 REYVPAAEGAARVNPAMVATGCWEHANVYAVYLAHEKAA-----LKALLHEPRYLSMSPDMAQMDLKAEETSDNLKRLFKAAISEKGKAETERVALLTVVSVFKGPSFVENPVLYTKADGTQVTNFHDGLAKLAGTSDAER 214          
BLAST of mRNA_E-fasciculatus_F_contig16475.4374.1 vs. uniprot
Match: A0A7S2V7U1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2V7U1_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.190e-24
Identity = 60/132 (45.45%), Postives = 74/132 (56.06%), Query Frame = 1
Query:  157 PRFLSMTPDTGLADLTAEETGRFVRTLARHQASVEGKSDLESAAFLLVTGVWA-PGSLIESPVLYTKDDGTQVTDYPRSLALWAGTTDGAR------------------LADDEAERQQYWASFRQAIRQAE 495
            PRFLS+ PD GL DL A+ETG  +  +++ +A  +GK+DL   A  LVTG W    S +E+PVLYTK DGTQVT++P SLALWA  T   +                    DD    Q YW S R AIRQ E
Sbjct:    1 PRFLSIAPDLGLVDLEADETGPVITHVSQQRAQRDGKTDLSQVAIPLVTGAWYNQDSHVEAPVLYTKSDGTQVTNFPDSLALWANVTTTCQPRQGPVDTEVSCTSPTTETDDDNEYSQTYWQSIRTAIRQGE 132          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16475.4374.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D8LM90_ECTSI1.140e-13674.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KHN6_9PHAE7.510e-10987.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1Z5K0G4_FISSO1.240e-4036.82Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A1Z5K7B1_FISSO8.650e-4048.55Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
B7G1X2_PHATC5.000e-3634.96Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A1H8DWD8_9PROT7.880e-3446.11Uncharacterized protein n=2 Tax=Nitrosomonas marin... [more]
A0A7S3LEC9_9STRA1.090e-3246.93Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
B7G1J3_PHATC1.470e-3044.85Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A813DXW5_POLGL1.930e-2746.10Hypothetical protein (Fragment) n=2 Tax=Polarella ... [more]
A0A7S2V7U1_9STRA1.190e-2445.45Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16475contigE-fasciculatus_F_contig16475:482..2609 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score400.6
Seed ortholog evalue5.5e-109
Seed eggNOG ortholog2880.D8LM90
EggNOG OGs2EIPY@1,2SP2G@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size771
Cds size771
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16475.4374.1prot_E-fasciculatus_F_contig16475.4374.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16475 482..2609 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928116.7154665-CDS-E-fasciculatus_F_contig16475:481..8831622928116.7154665-CDS-E-fasciculatus_F_contig16475:481..883Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16475 482..883 -
1695995825.3405566-CDS-E-fasciculatus_F_contig16475:481..8831695995825.3405566-CDS-E-fasciculatus_F_contig16475:481..883Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16475 482..883 -
1622928116.7282002-CDS-E-fasciculatus_F_contig16475:1355..14821622928116.7282002-CDS-E-fasciculatus_F_contig16475:1355..1482Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16475 1356..1482 -
1695995825.3594878-CDS-E-fasciculatus_F_contig16475:1355..14821695995825.3594878-CDS-E-fasciculatus_F_contig16475:1355..1482Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16475 1356..1482 -
1622928116.7416604-CDS-E-fasciculatus_F_contig16475:1921..20311622928116.7416604-CDS-E-fasciculatus_F_contig16475:1921..2031Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16475 1922..2031 -
1695995825.3681762-CDS-E-fasciculatus_F_contig16475:1921..20311695995825.3681762-CDS-E-fasciculatus_F_contig16475:1921..2031Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16475 1922..2031 -
1622928116.7590103-CDS-E-fasciculatus_F_contig16475:2477..26091622928116.7590103-CDS-E-fasciculatus_F_contig16475:2477..2609Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16475 2478..2609 -
1695995825.376321-CDS-E-fasciculatus_F_contig16475:2477..26091695995825.376321-CDS-E-fasciculatus_F_contig16475:2477..2609Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16475 2478..2609 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16475.4374.1

>prot_E-fasciculatus_F_contig16475.4374.1 ID=prot_E-fasciculatus_F_contig16475.4374.1|Name=mRNA_E-fasciculatus_F_contig16475.4374.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=257bp
GWREHVEVPGPPLVNPVVIPSGCAEHANIYAIYAVDSRQASSREVLNALL
MEPRFLSMTPDTGLADLTAEETGRFVRTLARHQASVEGKSDLESAAFLLV
TGVWAPGSLIESPVLYTKDDGTQVTDYPRSLALWAGTTDGARLADDEAER
QQYWASFRQAIRQAEHRLGQQQQQQQQRKDAPVQATEEEGAQRANDGGSG
DGVTTAARPLSECRSQARYGSGPDTVRMGREYTEGELLKIVPQVFGVRPT
AGSQEL*
back to top

mRNA from alignment at E-fasciculatus_F_contig16475:482..2609-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16475.4374.1 ID=mRNA_E-fasciculatus_F_contig16475.4374.1|Name=mRNA_E-fasciculatus_F_contig16475.4374.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2128bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16475:482..2609- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCTGGCGAGAGCATGTGGAGGTGCCTGGGCCTCCGCTGGTCAATCCCGT CGTCATCCCAAGCGGCTGCGCCGAGCACGCCAATATCTACGCGATCTACG CTGTCGACTCCAGGCAGGCGAGTAGCCGGGAGGTTGAGCCTTATTTTCGT GTTTTTGTCCACGACGACGAAAATGGATGTGGTGAGTTGTTGTCGATACG TTACGCTTCGGGTTTGCCACTCAAAGGCCACACAACTGTATGTGTATGTG TACTACAGTACGTAAGTTCAAGCTTTCCTTCCCTGCTAGTCTCTGTTGTG AAGCGCTACTGTTTCCCTCAGGAACCACCCACCTCTCGCATGGTTCGCGT GACAGCACTACCAAAGATTCAGACTGCAAACACTCCAAAACCGTACCATG ATGCGCTGCCACCCCCCGCAGCGCGAGCCGTACCCGAAAAATTGCCGCTG ATCAATGCTTGGCAGTGTCAATCGACGCTTGTTCTAGTACTACGTCAGAG GCGGAGGGTGGCGAGCCTTAGCGTCGTCCTTACCTCCGGGTGGGTGGGTT TCCCTGTCGGTGCATTTTCACAACTTAGGTTCTGAACGCGTTGCTCATGG AGCCCCGGTTCCTGAGCATGACGCCCGACACGGGGCTGGCGGACTTGACC GCCGAGGAAACGGGACGGTTCGTCCGGACTCTCGCAAGGTCGATACAAAC TCAAAGAAAAAGTGTTTCCAATTTTATTATGCTCACTCTTTACTGTATTC GAGTTTGGGGGATGCGCAGAGATGGTTTTAATTATCTTCATACGAAAAAG CAGACGAGCGATCGCAGCCAGCTACTGGGGTGCCCACGACACAGGGTAGA AACACCCGAGGTGTGGTGGTAGTTGTTGTTGATGGTGGTTCGACGTTTGT CGTGAACCACTCACGTGTGACCCTTGATGGTTGCGTGGTCGTTAGAAAAA TCGTAGTACTTTACATACGCTGAAAAGTGTATGGAACATGACTCGCCACG AAAAATGGGGGGACTGCTGTAGCAATTGTATAGGACGAAACACACAAACA ACCCTGACGGGGACTATACCATGGCACACCGATGCGTGCCGCTGTCGTTG GCAATCGCGCTTCTTCCCGCCACCCAGGCATCAAGCGAGCGTTGAAGGCA AGAGCGACCTCGAAAGCGCGGCGTTCCTGCTAGTGACAGGCGTTTGGGCA CCGGGGAGCCTGATTGAGAGTCCCGTGCTCTACACCAAAGACGACGGAAC CCAGGTAGACTTTCAACTTTCCAGCCCTAGATTTAGCGCATGGTTGCAGA GCGTCTGGCGTCCCTCTAGACTATGGCATCGACGTCTGCAACGTCTAATT ACTGTACACTTCTACATGGCACACAGCATCGACATTTGCCGATGAGGGGA ATACTTTGTGGAGACAAGACCTCCTGAACGAAGAAGCGGCACGCGGCACC CGGTTTCCATGCCACATTTTTGCCCCAACGTACGAGTTCTTGTCGTTTTT ATCAATATGAGAGACGGTGACGAACCGAACAGCTCCTCATCCCCGTAAAG AGGAAAATCTAAACCTCCATTCAGAAATCCCGCTTGAGCTCAACCTGCCC AAACCGTTGCATCCCGCCGAAACGCAACCTGCCCAACCGGCACATTCAGA AATCCCCTCGAAGCGCAGCCTGCCCAACCGTTCCGCCGAAACGCAACATG CCCAGCCGCCCCCTATCGTGGACCAGGTGACAGACTACCCGCGGTCGTTG GCGCTTTGGGCCGGCACCACAGACGGCGCCCGCCTCGCCGACGACGAGGC CGAGCGCCAACAGTACTGGGCGTCCTTTCGGCAGGCCATCCGGCAAGCCG AACACCGTCTGGGGCAGCAGCAGCAGCAGCAGCAGCAACGAAAGGACGCC CCCGTCCAAGCGACAGAAGAAGAAGGAGCGCAACGAGCCAATGACGGTGG TAGCGGTGATGGCGTCACCACAGCCGCCCGCCCCCTCAGCGAGTGCCGAT CGCAGGCTAGGTACGGATCCGGGCCGGACACGGTCAGGATGGGGAGGGAG TACACGGAGGGGGAGCTCCTAAAGATCGTGCCTCAGGTCTTTGGGGTCCG TCCTACGGCCGGGTCGCAGGAGCTGTGA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16475:482..2609-

>mRNA_E-fasciculatus_F_contig16475.4374.1 ID=mRNA_E-fasciculatus_F_contig16475.4374.1|Name=mRNA_E-fasciculatus_F_contig16475.4374.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1542bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16475:482..2609- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCTGGCGAGAGCATGTGGAGGTGCCTGGGCCTCCGCTGGTCAATCCCGT
CGTCATCCCAAGCGGCTGCGCCGAGCACGCCAATATCTACGCGATCTACG
CTGTCGACTCCAGGCAGGCGAGTAGCCGGGAGGGCTGGCGAGAGCATGTG
GAGGTGCCTGGGCCTCCGCTGGTCAATCCCGTCGTCATCCCAAGCGGCTG
CGCCGAGCACGCCAATATCTACGCGATCTACGCTGTCGACTCCAGGCAGG
CGAGTAGCCGGGAGGTTCTGAACGCGTTGCTCATGGAGCCCCGGTTCCTG
AGCATGACGCCCGACACGGGGCTGGCGGACTTGACCGCCGAGGAAACGGG
ACGGTTCGTCCGGACTCTCGCAAGGTTCTGAACGCGTTGCTCATGGAGCC
CCGGTTCCTGAGCATGACGCCCGACACGGGGCTGGCGGACTTGACCGCCG
AGGAAACGGGACGGTTCGTCCGGACTCTCGCAAGGCATCAAGCGAGCGTT
GAAGGCAAGAGCGACCTCGAAAGCGCGGCGTTCCTGCTAGTGACAGGCGT
TTGGGCACCGGGGAGCCTGATTGAGAGTCCCGTGCTCTACACCAAAGACG
ACGGAACCCAGGCATCAAGCGAGCGTTGAAGGCAAGAGCGACCTCGAAAG
CGCGGCGTTCCTGCTAGTGACAGGCGTTTGGGCACCGGGGAGCCTGATTG
AGAGTCCCGTGCTCTACACCAAAGACGACGGAACCCAGGTGACAGACTAC
CCGCGGTCGTTGGCGCTTTGGGCCGGCACCACAGACGGCGCCCGCCTCGC
CGACGACGAGGCCGAGCGCCAACAGTACTGGGCGTCCTTTCGGCAGGCCA
TCCGGCAAGCCGAACACCGTCTGGGGCAGCAGCAGCAGCAGCAGCAGCAA
CGAAAGGACGCCCCCGTCCAAGCGACAGAAGAAGAAGGAGCGCAACGAGC
CAATGACGGTGGTAGCGGTGATGGCGTCACCACAGCCGCCCGCCCCCTCA
GCGAGTGCCGATCGCAGGCTAGGTACGGATCCGGGCCGGACACGGTCAGG
ATGGGGAGGGAGTACACGGAGGGGGAGCTCCTAAAGATCGTGCCTCAGGT
CTTTGGGGTCCGTCCTACGGCCGGGTCGCAGGAGCTGTGAGTGACAGACT
ACCCGCGGTCGTTGGCGCTTTGGGCCGGCACCACAGACGGCGCCCGCCTC
GCCGACGACGAGGCCGAGCGCCAACAGTACTGGGCGTCCTTTCGGCAGGC
CATCCGGCAAGCCGAACACCGTCTGGGGCAGCAGCAGCAGCAGCAGCAGC
AACGAAAGGACGCCCCCGTCCAAGCGACAGAAGAAGAAGGAGCGCAACGA
GCCAATGACGGTGGTAGCGGTGATGGCGTCACCACAGCCGCCCGCCCCCT
CAGCGAGTGCCGATCGCAGGCTAGGTACGGATCCGGGCCGGACACGGTCA
GGATGGGGAGGGAGTACACGGAGGGGGAGCTCCTAAAGATCGTGCCTCAG
GTCTTTGGGGTCCGTCCTACGGCCGGGTCGCAGGAGCTGTGA
back to top