mRNA_E-fasciculatus_F_contig16470.4373.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16470.4373.1
Unique NamemRNA_E-fasciculatus_F_contig16470.4373.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig16470.4373.1 vs. uniprot
Match: A0A6H5KVE7_9PHAE (PIPK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVE7_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 3.900e-22
Identity = 45/48 (93.75%), Postives = 46/48 (95.83%), Query Frame = 1 
Query:    1 QAAKADAEFLCSVNVMDYSMLTCIHDSSRPADEEAVRRDSTEPRYSTL 144
            +AAKADAEFLCSVNVMDYSMLTCIHDSSRP DEEAVRRDSTEPRYST 
Sbjct:  176 EAAKADAEFLCSVNVMDYSMLTCIHDSSRPPDEEAVRRDSTEPRYSTF 223
[Close]
BLAST of mRNA_E-fasciculatus_F_contig16470.4373.1 vs. uniprot
Match: D8LLT5_ECTSI (PIPK domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLT5_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 6.300e-21
Identity = 44/48 (91.67%), Postives = 45/48 (93.75%), Query Frame = 1 
Query:    1 QAAKADAEFLCSVNVMDYSMLTCIHDSSRPADEEAVRRDSTEPRYSTL 144
            +AAKADAEFLCSVNVMDYSMLTCIHDSSRP DEEAVRRDS EPRYST 
Sbjct:  432 EAAKADAEFLCSVNVMDYSMLTCIHDSSRPPDEEAVRRDSIEPRYSTF 479
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16470.4373.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KVE7_9PHAE3.900e-2293.75PIPK domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LLT5_ECTSI6.300e-2191.67PIPK domain-containing protein n=1 Tax=Ectocarpus ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16470contigE-fasciculatus_F_contig16470:2437..2583 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.0
Seed ortholog evalue2.1e-17
Seed eggNOG ortholog2880.D8LLT5
KEGG rclassRC00002,RC00078
KEGG koko:K00889
KEGG ReactionR03469
KEGG Pathwayko00562,ko01100,ko04011,ko04070,ko04072,ko04139,ko04144,ko04666,ko04810,ko05231,map00562,map01100,map04011,map04070,map04072,map04139,map04144,map04666,map04810,map05231
KEGG ModuleM00130
EggNOG free text desc.Translation initiation factor IF-2, N-terminal region
EggNOG OGsCOG5253@1,KOG0229@2759
EC2.7.1.68
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size147
Cds size147
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928116.6631305-CDS-E-fasciculatus_F_contig16470:2436..25831622928116.6631305-CDS-E-fasciculatus_F_contig16470:2436..2583Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16470 2437..2583 +
1695995825.3241415-CDS-E-fasciculatus_F_contig16470:2436..25831695995825.3241415-CDS-E-fasciculatus_F_contig16470:2436..2583Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16470 2437..2583 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16470.4373.1prot_E-fasciculatus_F_contig16470.4373.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16470 2437..2583 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16470.4373.1

>prot_E-fasciculatus_F_contig16470.4373.1 ID=prot_E-fasciculatus_F_contig16470.4373.1|Name=mRNA_E-fasciculatus_F_contig16470.4373.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=49bp
QAAKADAEFLCSVNVMDYSMLTCIHDSSRPADEEAVRRDSTEPRYSTL*
back to top

mRNA from alignment at E-fasciculatus_F_contig16470:2437..2583+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16470.4373.1 ID=mRNA_E-fasciculatus_F_contig16470.4373.1|Name=mRNA_E-fasciculatus_F_contig16470.4373.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=147bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16470:2437..2583+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGCGGCGAAAGCTGACGCGGAGTTCCTGTGCAGCGTTAACGTCATGGA
CTACTCGATGCTGACGTGCATACACGACTCGTCGAGACCGGCGGACGAGG
AGGCCGTGCGACGCGATTCCACGGAGCCCCGTTACTCCACTTTGTGA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16470:2437..2583+

>mRNA_E-fasciculatus_F_contig16470.4373.1 ID=mRNA_E-fasciculatus_F_contig16470.4373.1|Name=mRNA_E-fasciculatus_F_contig16470.4373.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=294bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16470:2437..2583+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGCGGCGAAAGCTGACGCGGAGTTCCTGTGCAGCGTTAACGTCATGGA
CTACTCGATGCTGACGTGCATACACGACTCGTCGAGACCGGCGGACGAGG
AGGCCGTGCGACGCGATTCCACGGAGCCCCGTTACTCCACTTTGTGACAG
GCGGCGAAAGCTGACGCGGAGTTCCTGTGCAGCGTTAACGTCATGGACTA
CTCGATGCTGACGTGCATACACGACTCGTCGAGACCGGCGGACGAGGAGG
CCGTGCGACGCGATTCCACGGAGCCCCGTTACTCCACTTTGTGA
back to top