mRNA_E-fasciculatus_F_contig16466.4370.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16466.4370.1
Unique NamemRNA_E-fasciculatus_F_contig16466.4370.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16466.4370.1 vs. uniprot
Match: A0A6H5KS72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS72_9PHAE)

HSP 1 Score: 325 bits (832), Expect = 3.100e-111
Identity = 177/192 (92.19%), Postives = 183/192 (95.31%), Query Frame = 1 
Query:    1 RYVKYRARVSALALDPAVQSIVYCGIFMLMPLSLALIPLLLKESVYLLWVMKEGLQIVAPGLVETLTTLSEPVMSVFMTAGDNDKWRDTPAGEKRLLLGRRLAQACFKLEMVMPFGVALRVLPAALEASLGTGGGVADGEGAEGAAE-AGGQLGRALPLVKVLVLIMAYVKLLVVKNGQLEDDVRLLSGLKV 573
            RYVKYRARVSALALDPAVQ IVYCGIFMLMPLSLALIPLLLKESVYLLWVMKE LQI APGLVETLTTLSEP+MSVFMTAGD++KWRDTPAGEKRLLLGRRLAQACFKLEMVMPFGVALRVLPA L+ASLG GG VADGEGAEGAA  AGGQLGR LPLVKVLVL+MAYVKLLVVKNGQLEDDVR+LSGLKV
Sbjct:   16 RYVKYRARVSALALDPAVQGIVYCGIFMLMPLSLALIPLLLKESVYLLWVMKEALQITAPGLVETLTTLSEPLMSVFMTAGDSEKWRDTPAGEKRLLLGRRLAQACFKLEMVMPFGVALRVLPAVLQASLGAGGSVADGEGAEGAAAGAGGQLGRVLPLVKVLVLVMAYVKLLVVKNGQLEDDVRILSGLKV 207
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BLAST of mRNA_E-fasciculatus_F_contig16466.4370.1 vs. uniprot
Match: D8LSM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSM7_ECTSI)

HSP 1 Score: 328 bits (841), Expect = 1.920e-106
Identity = 178/194 (91.75%), Postives = 185/194 (95.36%), Query Frame = 1 
Query:    1 RYVKYRARVSALALDPAVQSIVYCGIFMLMPLSLALIPLLLKESVYLLWVMKEGLQIVAPGLVETLTTLSEPVMSVFMTAGDNDKWRDTPAGEKRLLLGRRLAQACFKLEMVMPFGVALRVLPAALEASLGTGGGVADGEGAEGAAE-AGGQLGRALPLVKVLVLIMAYVKLLVVKNGQLEDDVRLLSGLKVGG 579
            RYVKYRARVSALALDPAVQ IVYCGIFMLMPLSLALIPLLLKESVYLLWVMKE LQI APGLVETLTTLSEP+MSVFMTAGD++KWRDTPAGEKRLLLGRRLAQACFKLEMVMPFGVALRVLPA L+ SLG GGGVADGEGAEGAA  AGGQLGRALPLVKVLVL+MAYVKLLVVKNGQLEDDVR+LSGLK+ G
Sbjct:  357 RYVKYRARVSALALDPAVQGIVYCGIFMLMPLSLALIPLLLKESVYLLWVMKEALQITAPGLVETLTTLSEPLMSVFMTAGDSEKWRDTPAGEKRLLLGRRLAQACFKLEMVMPFGVALRVLPAVLQTSLGAGGGVADGEGAEGAAAGAGGQLGRALPLVKVLVLVMAYVKLLVVKNGQLEDDVRILSGLKIRG 550
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BLAST of mRNA_E-fasciculatus_F_contig16466.4370.1 vs. uniprot
Match: A0A835YJH6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJH6_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 2.870e-19
Identity = 74/191 (38.74%), Postives = 101/191 (52.88%), Query Frame = 1 
Query:   13 YRARVSALALDPAVQSIVYCGIFMLM--PLSLALIPLLLKESVYLLWVMKEGLQIVAPGLVETLTTLSEPVMSVFMTAGDNDKWRDTPAGEKRLLLGRRLAQACFKLEMVMPFGVALRVLPAALEASLGTGGGVADGEGAEGAAEAGGQLGRALPLVKVLVLIMAYVKLLVVKNGQLEDDVRLLSGLKVGG 579
            +RAR  ALA DPAVQ+ ++C + +    PLS AL PL L+E  YL  V +E + I AP  +  L  L     +V +  GD   WR    G + + +GRR++QACFKLE+       LR  P A++A         D + A  AA A              + I AY +LL V++ QL  DVR+LSGLK+GG
Sbjct:  126 FRARARALARDPAVQTSLFCALALTRQPPLSAALAPLALREGAYLFLVAREVVSIAAPRALPALGALVRWPAAVLVAKGDVRAWRAMGEGAQLVEVGRRVSQACFKLEVAALGAALLRDYPRAMKA---------DNKLAAAAAFA--------------LYIGAYAQLLSVRHAQLGGDVRVLSGLKLGG 293
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16466.4370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KS72_9PHAE3.100e-11192.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSM7_ECTSI1.920e-10691.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YJH6_9STRA2.870e-1938.74Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16466contigE-fasciculatus_F_contig16466:826..2715 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons3
Model size579
Cds size579
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16466.4370.1prot_E-fasciculatus_F_contig16466.4370.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16466 826..2715 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928116.2762182-CDS-E-fasciculatus_F_contig16466:825..10061622928116.2762182-CDS-E-fasciculatus_F_contig16466:825..1006Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16466 826..1006 +
1695995825.1280057-CDS-E-fasciculatus_F_contig16466:825..10061695995825.1280057-CDS-E-fasciculatus_F_contig16466:825..1006Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16466 826..1006 +
1622928116.2951553-CDS-E-fasciculatus_F_contig16466:1376..15071622928116.2951553-CDS-E-fasciculatus_F_contig16466:1376..1507Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16466 1377..1507 +
1695995825.1387203-CDS-E-fasciculatus_F_contig16466:1376..15071695995825.1387203-CDS-E-fasciculatus_F_contig16466:1376..1507Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16466 1377..1507 +
1622928116.3121395-CDS-E-fasciculatus_F_contig16466:2448..27151622928116.3121395-CDS-E-fasciculatus_F_contig16466:2448..2715Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16466 2449..2715 +
1695995825.1512783-CDS-E-fasciculatus_F_contig16466:2448..27151695995825.1512783-CDS-E-fasciculatus_F_contig16466:2448..2715Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16466 2449..2715 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16466.4370.1

>prot_E-fasciculatus_F_contig16466.4370.1 ID=prot_E-fasciculatus_F_contig16466.4370.1|Name=mRNA_E-fasciculatus_F_contig16466.4370.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=193bp
RYVKYRARVSALALDPAVQSIVYCGIFMLMPLSLALIPLLLKESVYLLWV
MKEGLQIVAPGLVETLTTLSEPVMSVFMTAGDNDKWRDTPAGEKRLLLGR
RLAQACFKLEMVMPFGVALRVLPAALEASLGTGGGVADGEGAEGAAEAGG
QLGRALPLVKVLVLIMAYVKLLVVKNGQLEDDVRLLSGLKVGG
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mRNA from alignment at E-fasciculatus_F_contig16466:826..2715+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16466.4370.1 ID=mRNA_E-fasciculatus_F_contig16466.4370.1|Name=mRNA_E-fasciculatus_F_contig16466.4370.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1890bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16466:826..2715+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGTACGTCAAATACCGTGCGAGGGTGTCGGCCCTGGCTCTCGACCCGGC
CGTCCAGAGCATCGTGTACTGCGGCATCTTCATGCTCATGCCCCTGAGCC
TCGCCCTCATCCCGCTCCTGCTCAAGGAGTCGGTCTACCTCCTGTGGGTC
ATGAAGGAGGGCCTGCAGATCGTAGCCCCAGGTTAGTCAGCTGGGTTTCG
TCGATGCGGTGCCCGCCCCTTACGGCAAGCGCACACGCACACAAGAATGG
ACGCGGGAAACGATGGGGTCGCTCAGTTATCTCTTGGGTAGCGGGGTACA
TGTACGCAACATGTGCAGTGGGCTGGCTTGGATCGGCTCTCCTGCGGGAA
ACCCTCCGCCCCAAAAGCCGTTTTTTTTTTTTGCTTTTCTTGCTTGGTAC
AATATAACAGAACAAATCGATTGTGTCCCCATGCTAGCGTTTTTTTTCGT
CTCGTACATGAATACCACCGAGTGCTATGCATACGAGAGGTACGAATTGT
CAAGCCTTGAAACGTCCGCTATGCGTATCTTGTGTGTGGTTGTTGACACA
GGCTTGGTGGAGACGTTGACGACGCTGTCAGAGCCGGTGATGAGCGTCTT
CATGACGGCGGGGGACAACGATAAGTGGAGGGACACCCCGGCGGGCGAGA
AGCGACTCTTGCTGGGAAGGCGATTGGCCCAGGTGGGTGTCGTCCTCTTC
TGTTGGGCGTTTCGCGGTTCTCCTGCTTTTGCGGCTGCCGCTGGGCGCCG
CTGGTGCTGGTGTAGCCGCGTTGTTTGCATGACACCCAACGCATGTACTG
CTGCTGTGAACTTTCGCAACAGCTGCTGTGAATATTCGCAACGCCTGCTG
TGAACTGTCGCAACAACCTAAAAATAAATAACACATATTATGTGGGAGGT
CATCGCAAACTTCTTTTTCCCGCGCTCGAGCCATGCGCTCTTCCACTAAT
ATTTGCTGTTCACATTGTGTACCGTGCGGAGGGGTTCAGCAGACGACACT
ATGTGCCCTTCCCTGGTACCCTTGTATGGGCGCCCTCCCAAAGAGTCGAC
GCCGCCCGTTCGAGTCCGAAATTCGGGCACCGCACATCTACGACTGCTGT
TACATATTTTGCCTTCCCACTTATGCTTGTTGCCAAGCCTCGTTGTCGTC
TCTGCCGCTTGCACGGCTTTTTCATGGGGGCGGGGGCGAATCTACCTCGC
GGTCTAATCTTAATCTGATCTGATGCGATACGTGTGTGTGGTAGCGTGGG
GCAACATGTGCCACTTAAAGCTAGCACGCCAGAAATATTGGAAGTTGTCT
TGTTGAGTTTCACGCGGGGCTTGTTCCGCTGGATTGGGGGGGCAGAACAA
CGCCCACGGAGATTCTGTTGCTTTTTGATGAGGGTTGTGGTTGCTTGTAG
AAGAACAGGGGAAAGCAGAGCGGTTCGTCTCAAGTGCGTTGCGTTGATGG
CCTACTTGACTCCAACAAACAACACCGAACGTTAACAGCAGTTCCCTGTC
CCCTTCTACCCCCCCCCCCCCGCTCTCTCGGTCTTTGTCTCTTCTCCCCC
CCCCGTTTACCCTGATCGCCATGCTCCGCATTTTCTGTCGTGCCAACGCC
ACGCACCCTCTCACCTGGAAAAGGCCTGCTTCAAGCTGGAGATGGTTATG
CCGTTCGGCGTGGCCCTCCGCGTCCTGCCGGCCGCCCTCGAAGCCTCTCT
AGGGACCGGGGGGGGCGTCGCGGACGGTGAAGGAGCGGAAGGGGCCGCTG
AAGCTGGCGGGCAACTCGGCCGAGCACTGCCCCTGGTAAAGGTGCTCGTG
CTGATCATGGCCTACGTGAAGCTCCTGGTGGTTAAGAACGGCCAGCTAGA
GGACGACGTGCGGCTTCTCAGCGGGCTTAAGGTGGGTGGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16466:826..2715+

>mRNA_E-fasciculatus_F_contig16466.4370.1 ID=mRNA_E-fasciculatus_F_contig16466.4370.1|Name=mRNA_E-fasciculatus_F_contig16466.4370.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1158bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16466:826..2715+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGTACGTCAAATACCGTGCGAGGGTGTCGGCCCTGGCTCTCGACCCGGC
CGTCCAGAGCATCGTGTACTGCGGCATCTTCATGCTCATGCCCCTGAGCC
TCGCCCTCATCCCGCTCCTGCTCAAGGAGTCGGTCTACCTCCTGTGGGTC
ATGAAGGAGGGCCTGCAGATCGTAGCCCCAGAGGTACGTCAAATACCGTG
CGAGGGTGTCGGCCCTGGCTCTCGACCCGGCCGTCCAGAGCATCGTGTAC
TGCGGCATCTTCATGCTCATGCCCCTGAGCCTCGCCCTCATCCCGCTCCT
GCTCAAGGAGTCGGTCTACCTCCTGTGGGTCATGAAGGAGGGCCTGCAGA
TCGTAGCCCCAGGCTTGGTGGAGACGTTGACGACGCTGTCAGAGCCGGTG
ATGAGCGTCTTCATGACGGCGGGGGACAACGATAAGTGGAGGGACACCCC
GGCGGGCGAGAAGCGACTCTTGCTGGGAAGGCGATTGGCCCAGGCTTGGT
GGAGACGTTGACGACGCTGTCAGAGCCGGTGATGAGCGTCTTCATGACGG
CGGGGGACAACGATAAGTGGAGGGACACCCCGGCGGGCGAGAAGCGACTC
TTGCTGGGAAGGCGATTGGCCCAGGCCTGCTTCAAGCTGGAGATGGTTAT
GCCGTTCGGCGTGGCCCTCCGCGTCCTGCCGGCCGCCCTCGAAGCCTCTC
TAGGGACCGGGGGGGGCGTCGCGGACGGTGAAGGAGCGGAAGGGGCCGCT
GAAGCTGGCGGGCAACTCGGCCGAGCACTGCCCCTGGTAAAGGTGCTCGT
GCTGATCATGGCCTACGTGAAGCTCCTGGTGGTTAAGAACGGCCAGCTAG
AGGACGACGTGCGGCTTCTCAGCGGGCTTAAGGTGGGTGGCGCCTGCTTC
AAGCTGGAGATGGTTATGCCGTTCGGCGTGGCCCTCCGCGTCCTGCCGGC
CGCCCTCGAAGCCTCTCTAGGGACCGGGGGGGGCGTCGCGGACGGTGAAG
GAGCGGAAGGGGCCGCTGAAGCTGGCGGGCAACTCGGCCGAGCACTGCCC
CTGGTAAAGGTGCTCGTGCTGATCATGGCCTACGTGAAGCTCCTGGTGGT
TAAGAACGGCCAGCTAGAGGACGACGTGCGGCTTCTCAGCGGGCTTAAGG
TGGGTGGC
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