mRNA_E-fasciculatus_F_contig16465.4369.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16465.4369.1
Unique NamemRNA_E-fasciculatus_F_contig16465.4369.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16465.4369.1 vs. uniprot
Match: A0A835YRX4_9STRA (Coatomer WD associated region-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRX4_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 3.400e-21
Identity = 44/72 (61.11%), Postives = 57/72 (79.17%), Query Frame = 1 
Query:   13 VYWSDNEDLCLLACQDNYYVLRYHASTVA--LQSGNIDSETGVDASFELVHEMTGKIRTGQWVGDCFLYTNE 222
            V+WSD  DL LLAC+++YYVLRY A  VA  L  G +D+E GV+A+FELV E+ G++RTGQWVG CFLYT++
Sbjct:  472 VFWSDAGDLVLLACEESYYVLRYDAGAVAAALARGAVDAEEGVEAAFELVGEVAGRVRTGQWVGACFLYTSD 543
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BLAST of mRNA_E-fasciculatus_F_contig16465.4369.1 vs. uniprot
Match: A0A4D9D3N3_9STRA (Coatomer_WDAD domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D3N3_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.660e-19
Identity = 40/71 (56.34%), Postives = 56/71 (78.87%), Query Frame = 1 
Query:   13 VYWSDNEDLCLLACQDNYYVLRYH--ASTVALQSGNIDSETGVDASFELVHEMTGKIRTGQWVGDCFLYTN 219
            +YW++  ++ LLAC+D+Y+VLRY+  A  VAL +G +  E GV+ SFEL+HE++ K+RTG WVGDCFLYTN
Sbjct:  487 IYWNETGEIVLLACEDSYFVLRYNKEAVAVALAAGQVGEE-GVEESFELLHELSDKVRTGMWVGDCFLYTN 556
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BLAST of mRNA_E-fasciculatus_F_contig16465.4369.1 vs. uniprot
Match: A0A392NWD9_9FABA (Coatomer subunit beta'-2-like (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392NWD9_9FABA)

HSP 1 Score: 82.4 bits (202), Expect = 9.820e-19
Identity = 35/78 (44.87%), Postives = 54/78 (69.23%), Query Frame = 1 
Query:    1 GCAQVYWSDNEDLCLLACQDNYYVLRYHASTVA--LQSGNIDSETGVDASFELVHEMTGKIRTGQWVGDCFLYTNEVW 228
            G   +YW+D+ DL  ++   ++Y+L+Y+   V+  L SG+   E GV+ +FEL+HEM+ ++RTG WVGDCF+YTN  W
Sbjct:   20 GTFNLYWADSGDLVAISSDTSFYILKYNRDVVSSYLDSGSSVDEQGVEDAFELLHEMSERVRTGVWVGDCFIYTNSSW 97
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BLAST of mRNA_E-fasciculatus_F_contig16465.4369.1 vs. uniprot
Match: A0A7S2DQ04_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DQ04_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.710e-18
Identity = 36/71 (50.70%), Postives = 53/71 (74.65%), Query Frame = 1 
Query:   13 VYWSDNEDLCLLACQDNYYVLRYHASTVA--LQSGNIDSETGVDASFELVHEMTGKIRTGQWVGDCFLYTN 219
            V+W+D+ +LCLL C+D  YVLR+ A+ VA  ++    ++E GV+ +FEL HE+  K+ TG+WVGDCF+YTN
Sbjct:  387 VHWNDSGELCLLVCEDTCYVLRFDAAAVAKAIEDDTFNAEEGVEGAFELTHELADKVATGEWVGDCFIYTN 457
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BLAST of mRNA_E-fasciculatus_F_contig16465.4369.1 vs. uniprot
Match: A0A136ITR3_9PEZI (Coatomer subunit beta' n=2 Tax=Microdochium TaxID=67608 RepID=A0A136ITR3_9PEZI)

HSP 1 Score: 87.4 bits (215), Expect = 2.340e-18
Identity = 37/72 (51.39%), Postives = 54/72 (75.00%), Query Frame = 1 
Query:   10 QVYWSDNEDLCLLACQDNYYVLRY--HASTVALQSGNIDSETGVDASFELVHEMTGKIRTGQWVGDCFLYTN 219
            QVYWS++ +L  LAC D++YVLR+   A   A Q+G +D E GV+A+FE++ ++   +RTG+WVGDCF+YTN
Sbjct:  466 QVYWSESGELVTLACDDSFYVLRFSREAYVEAFQNGEVDEEDGVEAAFEVITDIAETVRTGEWVGDCFIYTN 537
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BLAST of mRNA_E-fasciculatus_F_contig16465.4369.1 vs. uniprot
Match: A0A1Y2VVP8_9PEZI (Coatomer subunit beta' n=3 Tax=unclassified Hypoxylon TaxID=2614581 RepID=A0A1Y2VVP8_9PEZI)

HSP 1 Score: 85.9 bits (211), Expect = 8.130e-18
Identity = 38/72 (52.78%), Postives = 55/72 (76.39%), Query Frame = 1 
Query:   10 QVYWSDNEDLCLLACQDNYYVLRYHASTV--ALQSGNIDSETGVDASFELVHEMTGKIRTGQWVGDCFLYTN 219
            QVYWSD+ +L  LAC+D +YVLR+   +   A+Q+G +D E GV+A+FE++ ++   +RTGQWVGDCF+YTN
Sbjct:  468 QVYWSDSGELVALACEDTFYVLRFSRESYIEAVQAGQVD-EDGVEAAFEVITDIAESVRTGQWVGDCFIYTN 538
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BLAST of mRNA_E-fasciculatus_F_contig16465.4369.1 vs. uniprot
Match: A0A0C9M0W7_BLOB1 (Coatomer subunit beta' n=1 Tax=Fungal sp. (strain No.11243) TaxID=1603295 RepID=A0A0C9M0W7_BLOB1)

HSP 1 Score: 85.9 bits (211), Expect = 8.130e-18
Identity = 41/71 (57.75%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:   13 VYWSDNEDLCLLACQDNYYVLRYH--ASTVALQSGNIDSETGVDASFELVHEMTGKIRTGQWVGDCFLYTN 219
            VYWSD+ +L  LAC+D YYVLRY   A    LQ+G  D E GV+A+FE+V ++   +RTGQWVGDCF+YTN
Sbjct:  468 VYWSDSGELVALACEDTYYVLRYSRDAYLAGLQNGEAD-EDGVEAAFEVVTDVNESVRTGQWVGDCFVYTN 537
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BLAST of mRNA_E-fasciculatus_F_contig16465.4369.1 vs. uniprot
Match: A0A8H4IV16_9PEZI (GPI ethanolamine phosphate transferase 1 n=1 Tax=Botryosphaeria dothidea TaxID=55169 RepID=A0A8H4IV16_9PEZI)

HSP 1 Score: 85.9 bits (211), Expect = 8.270e-18
Identity = 39/71 (54.93%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:   13 VYWSDNEDLCLLACQDNYYVLRYHAST--VALQSGNIDSETGVDASFELVHEMTGKIRTGQWVGDCFLYTN 219
            VYWS+N +L  LAC D YYVLR+       ALQ+G +D E GV+A+FE++ ++   +RTGQWVGDCF+YTN
Sbjct:  486 VYWSENGELVALACDDTYYVLRFSRENYVAALQAGEVD-EDGVEAAFEVITDINESVRTGQWVGDCFVYTN 555
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BLAST of mRNA_E-fasciculatus_F_contig16465.4369.1 vs. uniprot
Match: A0A0G4N2I7_9PEZI (Coatomer_WDAD domain-containing protein n=1 Tax=Verticillium longisporum TaxID=100787 RepID=A0A0G4N2I7_9PEZI)

HSP 1 Score: 85.5 bits (210), Expect = 1.100e-17
Identity = 39/72 (54.17%), Postives = 55/72 (76.39%), Query Frame = 1 
Query:   10 QVYWSDNEDLCLLACQDNYYVLRY--HASTVALQSGNIDSETGVDASFELVHEMTGKIRTGQWVGDCFLYTN 219
            QVYWSD+ +L  LAC+D++YVLR+   A   ALQ+G  D E GV+A+FE++ ++   +RTG+WVGDCF+YTN
Sbjct:  246 QVYWSDSGELVTLACEDSFYVLRFSREAYNEALQNGEAD-EDGVEAAFEVITDINESVRTGEWVGDCFIYTN 316
[Close]
BLAST of mRNA_E-fasciculatus_F_contig16465.4369.1 vs. uniprot
Match: A0A6A6YCG0_9PEZI (Coatomer subunit beta' n=2 Tax=Mytilinidiaceae TaxID=281242 RepID=A0A6A6YCG0_9PEZI)

HSP 1 Score: 85.5 bits (210), Expect = 1.110e-17
Identity = 38/71 (53.52%), Postives = 53/71 (74.65%), Query Frame = 1 
Query:   13 VYWSDNEDLCLLACQDNYYVLRYHAST--VALQSGNIDSETGVDASFELVHEMTGKIRTGQWVGDCFLYTN 219
            VYWS++ +LC LAC+D +YVLRY       A+QSG +D E G +++FE+V ++   +RTGQWVGDCF+YTN
Sbjct:  467 VYWSESGELCTLACEDTFYVLRYSREDYLAAVQSGEVD-EDGAESAFEVVCDINESVRTGQWVGDCFVYTN 536
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16465.4369.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YRX4_9STRA3.400e-2161.11Coatomer WD associated region-domain-containing pr... [more]
A0A4D9D3N3_9STRA2.660e-1956.34Coatomer_WDAD domain-containing protein n=2 Tax=Mo... [more]
A0A392NWD9_9FABA9.820e-1944.87Coatomer subunit beta'-2-like (Fragment) n=1 Tax=T... [more]
A0A7S2DQ04_9STRA1.710e-1850.70Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A136ITR3_9PEZI2.340e-1851.39Coatomer subunit beta' n=2 Tax=Microdochium TaxID=... [more]
A0A1Y2VVP8_9PEZI8.130e-1852.78Coatomer subunit beta' n=3 Tax=unclassified Hypoxy... [more]
A0A0C9M0W7_BLOB18.130e-1857.75Coatomer subunit beta' n=1 Tax=Fungal sp. (strain ... [more]
A0A8H4IV16_9PEZI8.270e-1854.93GPI ethanolamine phosphate transferase 1 n=1 Tax=B... [more]
A0A0G4N2I7_9PEZI1.100e-1754.17Coatomer_WDAD domain-containing protein n=1 Tax=Ve... [more]
A0A6A6YCG0_9PEZI1.110e-1753.52Coatomer subunit beta' n=2 Tax=Mytilinidiaceae Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16465contigE-fasciculatus_F_contig16465:646..1285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score89.4
Seed ortholog evalue8.3e-16
Seed eggNOG ortholog310453.XP_007579473.1
Preferred nameSEC27
KEGG koko:K17302
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005798,GO:0006810,GO:0006886,GO:0006888,GO:0006890,GO:0006891,GO:0007034,GO:0008104,GO:0008150,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0016197,GO:0030117,GO:0030120,GO:0030126,GO:0030135,GO:0030137,GO:0030659,GO:0030660,GO:0030662,GO:0030663,GO:0031090,GO:0031410,GO:0031982,GO:0032182,GO:0032509,GO:0032511,GO:0032991,GO:0033036,GO:0034613,GO:0042886,GO:0043130,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045324,GO:0046907,GO:0048193,GO:0048475,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0071985,GO:0097708,GO:0098588,GO:0098796,GO:0098805
EggNOG free text desc.The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
EggNOG OGs1ZYMF@147541,38EBC@33154,3NWHK@4751,3QK5Z@4890,KOG0276@1,KOG0276@2759
COG Functional cat.U
Best tax levelDothideomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size234
Cds size234
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928116.2061908-CDS-E-fasciculatus_F_contig16465:645..7381622928116.2061908-CDS-E-fasciculatus_F_contig16465:645..738Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16465 646..738 +
1695995825.1049376-CDS-E-fasciculatus_F_contig16465:645..7381695995825.1049376-CDS-E-fasciculatus_F_contig16465:645..738Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16465 646..738 +
1622928116.221553-CDS-E-fasciculatus_F_contig16465:1144..12851622928116.221553-CDS-E-fasciculatus_F_contig16465:1144..1285Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16465 1145..1285 +
1695995825.118342-CDS-E-fasciculatus_F_contig16465:1144..12851695995825.118342-CDS-E-fasciculatus_F_contig16465:1144..1285Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16465 1145..1285 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16465.4369.1prot_E-fasciculatus_F_contig16465.4369.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16465 646..1285 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16465.4369.1

>prot_E-fasciculatus_F_contig16465.4369.1 ID=prot_E-fasciculatus_F_contig16465.4369.1|Name=mRNA_E-fasciculatus_F_contig16465.4369.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=78bp
GCAQVYWSDNEDLCLLACQDNYYVLRYHASTVALQSGNIDSETGVDASFE
LVHEMTGKIRTGQWVGDCFLYTNEVWM*
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mRNA from alignment at E-fasciculatus_F_contig16465:646..1285+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16465.4369.1 ID=mRNA_E-fasciculatus_F_contig16465.4369.1|Name=mRNA_E-fasciculatus_F_contig16465.4369.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=640bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16465:646..1285+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGTGCGCGCAGGTGTACTGGTCGGACAACGAGGACCTTTGCCTGCTGGC
CTGCCAGGACAACTACTACGTGCTGCGATACCACGCCTCCACTGTCGAGG
CAAGTCCGGGGTTGGTTTAAGTCCATCTTGATGAGCGTCATGATAAGTTC
GTGCTTGGAGGGTCTTGCTAGGTGTTGATAACAGATGAGATACCACGCCC
CCACTTCGAGGGAGGTCTTTTCTTGGTTCAAGTCCATTCTTGTTTTGCTT
ACCTGCGTGTTTTTACTGTTTTTTTTTTTTTTTGCCTCACCTCCCTGCCG
TATGTGGCATGCACGGGCTGCCCTCCAGAGCGGCAACATCGAGTAAATAA
TCTCCATTAATGTTATTTACATTCCATGTATAGATAAGTAGTAGCGATGG
ATTTCAGAACGTGGTGTTTCTCCACCATTACCTGTTTTGTTGGGTTTTTT
TTATTATGTATTAATTTATTAATATATTTTCCGTGTGTGGCATGCGCAGG
TCGCCCTCCAGAGCGGCAACATCGACAGCGAGACCGGTGTTGACGCCTCC
TTCGAGCTGGTGCACGAGATGACCGGCAAGATCCGCACGGGACAGTGGGT
CGGCGACTGCTTCCTCTACACTAACGAGGTGTGGATGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16465:646..1285+

>mRNA_E-fasciculatus_F_contig16465.4369.1 ID=mRNA_E-fasciculatus_F_contig16465.4369.1|Name=mRNA_E-fasciculatus_F_contig16465.4369.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=468bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16465:646..1285+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGTGCGCGCAGGTGTACTGGTCGGACAACGAGGACCTTTGCCTGCTGGC
CTGCCAGGACAACTACTACGTGCTGCGATACCACGCCTCCACTGGGTGCG
CGCAGGTGTACTGGTCGGACAACGAGGACCTTTGCCTGCTGGCCTGCCAG
GACAACTACTACGTGCTGCGATACCACGCCTCCACTGTCGCCCTCCAGAG
CGGCAACATCGACAGCGAGACCGGTGTTGACGCCTCCTTCGAGCTGGTGC
ACGAGATGACCGGCAAGATCCGCACGGGACAGTGGGTCGGCGACTGCTTC
CTCTACACTAACGAGGTGTGGATGTGAGTCGCCCTCCAGAGCGGCAACAT
CGACAGCGAGACCGGTGTTGACGCCTCCTTCGAGCTGGTGCACGAGATGA
CCGGCAAGATCCGCACGGGACAGTGGGTCGGCGACTGCTTCCTCTACACT
AACGAGGTGTGGATGTGA
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