mRNA_E-fasciculatus_F_contig1646.4366.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1646.4366.1
Unique NamemRNA_E-fasciculatus_F_contig1646.4366.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1646.4366.1 vs. uniprot
Match: UPI001CF69A0D (zinc finger protein 595-like n=2 Tax=Thunnus TaxID=8234 RepID=UPI001CF69A0D)

HSP 1 Score: 49.3 bits (116), Expect = 2.100e-5
Identity = 21/42 (50.00%), Postives = 26/42 (61.90%), Query Frame = 1 
Query:   31 TQDRLTTHIQRHTNKNPFSCDFVGCDRSFPSPSTLTRHKKTH 156
            T   + TH++ HT   PFSCD   C++SFP P  L RHKK H
Sbjct:  254 TFQNMETHMRSHTGIKPFSCDV--CNKSFPRPGALRRHKKIH 293
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1646.4366.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001CF69A0D2.100e-550.00zinc finger protein 595-like n=2 Tax=Thunnus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1646contigE-fasciculatus_F_contig1646:1502..1657 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionPutative C2H2 zinc finger protein pseudogene
Ec32 orthologEc-06_007710.1
Exons1
Model size156
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928116.0055208-CDS-E-fasciculatus_F_contig1646:1501..16571622928116.0055208-CDS-E-fasciculatus_F_contig1646:1501..1657Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1646 1502..1657 +
1695995825.0577607-CDS-E-fasciculatus_F_contig1646:1501..16571695995825.0577607-CDS-E-fasciculatus_F_contig1646:1501..1657Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1646 1502..1657 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1646.4366.1prot_E-fasciculatus_F_contig1646.4366.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1646 1502..1657 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1646.4366.1

>prot_E-fasciculatus_F_contig1646.4366.1 ID=prot_E-fasciculatus_F_contig1646.4366.1|Name=mRNA_E-fasciculatus_F_contig1646.4366.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=52bp
HVNVGKLSFSTQDRLTTHIQRHTNKNPFSCDFVGCDRSFPSPSTLTRHKK
TH
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mRNA from alignment at E-fasciculatus_F_contig1646:1502..1657+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1646.4366.1 ID=mRNA_E-fasciculatus_F_contig1646.4366.1|Name=mRNA_E-fasciculatus_F_contig1646.4366.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=156bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1646:1502..1657+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CATGTCAATGTGGGCAAACTATCATTCTCCACCCAGGACCGCCTCACTAC
CCACATTCAAAGACACACGAACAAGAATCCTTTCTCGTGTGACTTTGTGG
GGTGTGACAGAAGCTTCCCTTCACCAAGCACCCTGACCAGGCACAAGAAA
ACCCAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1646:1502..1657+

>mRNA_E-fasciculatus_F_contig1646.4366.1 ID=mRNA_E-fasciculatus_F_contig1646.4366.1|Name=mRNA_E-fasciculatus_F_contig1646.4366.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=312bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1646:1502..1657+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CATGTCAATGTGGGCAAACTATCATTCTCCACCCAGGACCGCCTCACTAC
CCACATTCAAAGACACACGAACAAGAATCCTTTCTCGTGTGACTTTGTGG
GGTGTGACAGAAGCTTCCCTTCACCAAGCACCCTGACCAGGCACAAGAAA
ACCCACCATGTCAATGTGGGCAAACTATCATTCTCCACCCAGGACCGCCT
CACTACCCACATTCAAAGACACACGAACAAGAATCCTTTCTCGTGTGACT
TTGTGGGGTGTGACAGAAGCTTCCCTTCACCAAGCACCCTGACCAGGCAC
AAGAAAACCCAC
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