mRNA_E-fasciculatus_F_contig16457.4365.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16457.4365.1
Unique NamemRNA_E-fasciculatus_F_contig16457.4365.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16457.4365.1 vs. uniprot
Match: D7G444_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G444_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 6.910e-50
Identity = 84/85 (98.82%), Postives = 84/85 (98.82%), Query Frame = 1 
Query:    1 MKTITETYADYFRDLHGWLSEYFFAKLARACFEKSVKLLIQFFTNEAMPGSSTTMKEYLAQAGIREVGAMDDVAQAARDAATVLE 255
            MKTITETYADYFRDLHGWLSEYFFAKLARACFEKSVKLLIQFFTNEAMPGSSTTMKEYLAQAGIRE GAMDDVAQAARDAATVLE
Sbjct:    1 MKTITETYADYFRDLHGWLSEYFFAKLARACFEKSVKLLIQFFTNEAMPGSSTTMKEYLAQAGIREAGAMDDVAQAARDAATVLE 85
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BLAST of mRNA_E-fasciculatus_F_contig16457.4365.1 vs. uniprot
Match: A0A6H5KMB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMB3_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 1.010e-39
Identity = 84/118 (71.19%), Postives = 84/118 (71.19%), Query Frame = 1 
Query:    1 MKTITETYADYFRDLHGWLSEYFFAKLARACFEKSVK---------------------------------LLIQFFTNEAMPGSSTTMKEYLAQAGIREVGAMDDVAQAARDAATVLE 255
            MKTITETYADYFRDLHGWLSEYFFAKLARACFEKSVK                                 LLIQFFTNE MPGSSTTMKEYLAQAGIREVGAMDDVAQAARDAATVLE
Sbjct:  394 MKTITETYADYFRDLHGWLSEYFFAKLARACFEKSVKVYVESLLIGDASGARHEFSSPGVAAQRIRGDIQLLIQFFTNETMPGSSTTMKEYLAQAGIREVGAMDDVAQAARDAATVLE 511
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16457.4365.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G444_ECTSI6.910e-5098.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KMB3_9PHAE1.010e-3971.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16457contigE-fasciculatus_F_contig16457:667..2600 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-25_000630.1
Exons2
Model size255
Cds size255
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928115.782991-CDS-E-fasciculatus_F_contig16457:666..7771622928115.782991-CDS-E-fasciculatus_F_contig16457:666..777Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16457 667..777 +
1695995825.0301375-CDS-E-fasciculatus_F_contig16457:666..7771695995825.0301375-CDS-E-fasciculatus_F_contig16457:666..777Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16457 667..777 +
1622928115.9306393-CDS-E-fasciculatus_F_contig16457:2456..26001622928115.9306393-CDS-E-fasciculatus_F_contig16457:2456..2600Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16457 2457..2600 +
1695995825.0437877-CDS-E-fasciculatus_F_contig16457:2456..26001695995825.0437877-CDS-E-fasciculatus_F_contig16457:2456..2600Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16457 2457..2600 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16457.4365.1prot_E-fasciculatus_F_contig16457.4365.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16457 667..2600 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16457.4365.1

>prot_E-fasciculatus_F_contig16457.4365.1 ID=prot_E-fasciculatus_F_contig16457.4365.1|Name=mRNA_E-fasciculatus_F_contig16457.4365.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=85bp
MKTITETYADYFRDLHGWLSEYFFAKLARACFEKSVKLLIQFFTNEAMPG
SSTTMKEYLAQAGIREVGAMDDVAQAARDAATVLE
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mRNA from alignment at E-fasciculatus_F_contig16457:667..2600+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16457.4365.1 ID=mRNA_E-fasciculatus_F_contig16457.4365.1|Name=mRNA_E-fasciculatus_F_contig16457.4365.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1934bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16457:667..2600+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAAGACCATCACCGAGACGTACGCCGACTACTTCCGGGACCTGCACGG
CTGGCTGTCGGAGTACTTCTTCGCCAAGCTGGCAAGGGCCTGCTTCGAGA
AAAGCGTCAAGGTGACCGGCCGGTGTTGGTGCTGCTGTGATGTTGTTGGC
GTTGGTCTTGGCGTTGTTGTTTTTTCTGGTGCGCTGTGATGATGTTGTTG
TTGTTTGTATTGTTCCGTGTAGGTGTTGGTATTGGTCTTGGTGTTGGATG
TTCATGTTGAGTTCATGTTGACATTGGTCTTATTTGGTAATGTGTTGGTG
TGGTCGGTGTTGGTATTGATGCTGGTGTGAAATGTTCATGTTCCTGCTGT
AGTTGTCGCAACACCATGTCCTTTCTCCTCCTCTTCCACCCATCACCTGT
GCTCTATGTGCCATCGGCCATCGCCATCAGTGATCGCTCCTGCTGGAACA
ATGCTTCCGTCCTCTCGAGGATGCGTGGTCCATGCTGTAAGAGCGAACGC
ATGCAAAACATAAGAGTACCTACCCCCCCCCCGAGGTCTATGGTCTAACG
ACTACGGCATGCACGACTATGAGTACCCCCCCCCCGCGCGCTCTTGTGGT
ATATTTTGAAGGTCTACGTAGAGTCCCTCTTGATGGGCGACGCCTCCGGA
GCCAGGCACGAGTTCTCGTCCCCCGGGGTGGCGGCTCAGCGTATTCGTGG
AGACATCCAGGTGAACACCCATGCTGTGTTGCATGCCTACCGGTACAGCG
AAACGACTTAAACAAAGAGTAGAGGCGTGACAGCAGTAGAGGGGATTGTC
AATATCGCTCCTTCTCTCTCTGTGTGTCTGCCATCCCCTCTCCCCCCCCC
CCCCGCGCCTTTCTCTCTCTCTCTCATCTATCTCTCTCGCTGTCTGCCAT
CCCCTCTCCCCCCCCTCCCCCTCGCCTTTTTTCTCTCTCTCAATCTGTCT
GTCCTTCCCTCTCCCTCTCCCTCAATAAGACGCCTTTGCCCCATCGTATT
CAATGCAATACCCGCGTTTTATGGCGGCCTCGGGCGTTGTACTGTAGCCG
ATCTTCTCTCTCTCTCGCCCGGCCAACTCTGTATATTTTGGTTGGTTTTA
CTGCCCGAAGAGTATGCATAGGGCGTAACGTGTGCGGTAGGGTAGGTACC
ATTGGTGCCTGGTAGATACTATCTATTTCTCACTCATGCATGTAAGAGTG
GAGGATACTCAACTACACAGTCGTAGGCCCCCCCCTGTTGTAAGGCGGGC
TATATACGGCGGGTGCCCTATCTACATGTATGGCGGGTAAAAGTGGGTGG
CACAGACGCAACAATCAAGTTGTTCGGCACATTGGATAAGGATAAGGCGG
GTGCTGTGGATCGGTCTGGCGCATACCCGCCTTAGTAGAGGGCCTACCTA
CAAGTACGACTGTTGCTGTTGCATGAAAGAATTTATACCCGTTTGAGATA
GCCCTATCGCCCTGTCAGGGTCGATCAAACATCGACGGGGGATTATTATA
TTTTTGTAGTGTTCGTCCCTCTCCACCTCACACACCCATTCCCACAATAT
TACGTCTTGTTTCTTGCTCATGAGTGCACTGATAATGGACTAAAACTTTT
AATATGTAAAATCCAGACTACCACTAACCAATACTGTTCGAGATAAATGT
TGTGGATTAATCACGGGGACAGCCAACTAACCAATAGAACGATGCCCCCC
CCCCCCACCCTCTCTTAAAACGCCAACCGTGACTCCGCAAACAATACAAA
CGGCTTCTTACATCCAACATACGGTACGGACGCATGACAGCTCTTGATCC
AGTTCTTCACGAACGAGGCCATGCCAGGCTCGAGCACAACGATGAAGGAG
TACCTCGCTCAGGCGGGGATAAGAGAGGTTGGCGCGATGGACGACGTGGC
GCAGGCGGCGAGAGATGCCGCAACCGTTTTGGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16457:667..2600+

>mRNA_E-fasciculatus_F_contig16457.4365.1 ID=mRNA_E-fasciculatus_F_contig16457.4365.1|Name=mRNA_E-fasciculatus_F_contig16457.4365.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=510bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16457:667..2600+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAAGACCATCACCGAGACGTACGCCGACTACTTCCGGGACCTGCACGG
CTGGCTGTCGGAGTACTTCTTCGCCAAGCTGGCAAGGGCCTGCTTCGAGA
AAAGCGTCAAGATGAAGACCATCACCGAGACGTACGCCGACTACTTCCGG
GACCTGCACGGCTGGCTGTCGGAGTACTTCTTCGCCAAGCTGGCAAGGGC
CTGCTTCGAGAAAAGCGTCAAGCTCTTGATCCAGTTCTTCACGAACGAGG
CCATGCCAGGCTCGAGCACAACGATGAAGGAGTACCTCGCTCAGGCGGGG
ATAAGAGAGGTTGGCGCGATGGACGACGTGGCGCAGGCGGCGAGAGATGC
CGCAACCGTTTTGGAGCTCTTGATCCAGTTCTTCACGAACGAGGCCATGC
CAGGCTCGAGCACAACGATGAAGGAGTACCTCGCTCAGGCGGGGATAAGA
GAGGTTGGCGCGATGGACGACGTGGCGCAGGCGGCGAGAGATGCCGCAAC
CGTTTTGGAG
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