mRNA_E-fasciculatus_F_contig16450.4364.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16450.4364.1
Unique NamemRNA_E-fasciculatus_F_contig16450.4364.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16450.4364.1 vs. uniprot
Match: D8LAV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAV7_ECTSI)

HSP 1 Score: 337 bits (864), Expect = 4.270e-109
Identity = 210/257 (81.71%), Postives = 218/257 (84.82%), Query Frame = 1 
Query:    1 RLPHSGTVGGVPGEKENAGAEARAAAVAEGKLAVEVSHHLKGALSPGVRGTQWQHFHQPSTPSKANNVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--VLPLSPSATAARSMNALSHPTFDRGTGFSLSTARRVSVRAVRAKSGGXXXXX----FTHAHAPAVVLRVPPGRPSSARKLTASGRREAHERGDLELDVAEVSPYPKCGSRESERRASFSSCESETPKRGRSPPFVAAGLTLLPPISCDEAVSWEFE 753
            R  HSGT GGVPG+KENAGAEARAAAVAEGKLAVEVSHHLKGALSPGVRGTQWQH+HQPSTPS+ANNVP            XXXXXXXXXXXXXXXXXX  VLPLSPSATAARSMNAL H TFDRGTGFSLS ARRVSVRAVRA+   XXXXX    FTHAH+PAVVLRVP GRP+SARKL A GRREA ERGDLELDVAEVSP PK  S +SER+A FSSCESETPKRGRSP   AAGLTLLPPISCDEAVSWEFE
Sbjct:   22 RASHSGTFGGVPGDKENAGAEARAAAVAEGKLAVEVSHHLKGALSPGVRGTQWQHYHQPSTPSRANNVPSTPPSIPFTGSAXXXXXXXXXXXXXXXXXXXXVLPLSPSATAARSMNALGHSTFDRGTGFSLSAARRVSVRAVRARXXXXXXXXXXXXFTHAHSPAVVLRVPQGRPTSARKLMAGGRREALERGDLELDVAEVSPSPKRSSNDSERKAPFSSCESETPKRGRSPSVAAAGLTLLPPISCDEAVSWEFE 278
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BLAST of mRNA_E-fasciculatus_F_contig16450.4364.1 vs. uniprot
Match: A0A6H5JPD1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPD1_9PHAE)

HSP 1 Score: 323 bits (827), Expect = 7.340e-104
Identity = 182/255 (71.37%), Postives = 195/255 (76.47%), Query Frame = 1 
Query:    1 RLPHSGTVGGVPGEKENAGAEARAAAVAEGKLAVEVSHHLKGALSPGVRGTQWQHFHQPSTPSKANNVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLPLSPSATAARSMNALSHPTFDRGTGFSLSTARRVSVRAVRAKSGGXXXXX----FTHAHAPAVVLRVPPGRPSSARKLTASGRREAHERGDLELDVAEVSPYPKCGSRESERRASFSSCESETPKRGRSPPFVAAGLTLLPPISCDEAVSWEFE 753
            R   SGT GGVPG+KENAGAEARAAAVAEGKLAVEVSHHLKGALSPGVRGTQWQ++HQ STPS+ANN P                              VLPLSPSATAARSMNALSH T DR TGFSLS ARRVS RAVRA+   XXXXX    F HAH+P VV+RVPPGRP+ ARKL A GRREAHERGDLELD+AEVSP PK GS +SER+ASFSSC SETPKRGRSP  VAAGLT LPP+SCDEA+SWEFE
Sbjct:   22 RASQSGTFGGVPGDKENAGAEARAAAVAEGKLAVEVSHHLKGALSPGVRGTQWQNYHQSSTPSRANNFPSTPPSIPFTSSVAETATAAAATGRAGADGAVLPLSPSATAARSMNALSHSTLDRCTGFSLSAARRVSARAVRARXXXXXXXXXXXXFMHAHSPPVVVRVPPGRPTVARKLMAGGRREAHERGDLELDLAEVSPSPKRGSNDSERKASFSSCGSETPKRGRSPSVVAAGLTPLPPVSCDEALSWEFE 276
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16450.4364.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LAV7_ECTSI4.270e-10981.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JPD1_9PHAE7.340e-10471.37Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16450contigE-fasciculatus_F_contig16450:1..1340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_006250.1
Exons2
Model size753
Cds size753
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928115.7303114-CDS-E-fasciculatus_F_contig16450:0..5851622928115.7303114-CDS-E-fasciculatus_F_contig16450:0..585Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16450 1..585 +
1695995825.0087252-CDS-E-fasciculatus_F_contig16450:0..5851695995825.0087252-CDS-E-fasciculatus_F_contig16450:0..585Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16450 1..585 +
1622928115.7443635-CDS-E-fasciculatus_F_contig16450:1172..13401622928115.7443635-CDS-E-fasciculatus_F_contig16450:1172..1340Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16450 1173..1340 +
1695995825.0209136-CDS-E-fasciculatus_F_contig16450:1172..13401695995825.0209136-CDS-E-fasciculatus_F_contig16450:1172..1340Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16450 1173..1340 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16450.4364.1prot_E-fasciculatus_F_contig16450.4364.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16450 1..1340 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16450.4364.1

>prot_E-fasciculatus_F_contig16450.4364.1 ID=prot_E-fasciculatus_F_contig16450.4364.1|Name=mRNA_E-fasciculatus_F_contig16450.4364.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=251bp
RLPHSGTVGGVPGEKENAGAEARAAAVAEGKLAVEVSHHLKGALSPGVRG
TQWQHFHQPSTPSKANNVPSTPPSIPFIGSAGETAAAAAGRAVAGADGPV
LPLSPSATAARSMNALSHPTFDRGTGFSLSTARRVSVRAVRAKSGGGGGD
GFTHAHAPAVVLRVPPGRPSSARKLTASGRREAHERGDLELDVAEVSPYP
KCGSRESERRASFSSCESETPKRGRSPPFVAAGLTLLPPISCDEAVSWEF
E
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mRNA from alignment at E-fasciculatus_F_contig16450:1..1340+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16450.4364.1 ID=mRNA_E-fasciculatus_F_contig16450.4364.1|Name=mRNA_E-fasciculatus_F_contig16450.4364.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1340bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16450:1..1340+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGCCTTCCTCACAGCGGCACCGTCGGAGGCGTTCCCGGGGAGAAAGAAAA
CGCCGGCGCGGAGGCCCGCGCCGCCGCCGTCGCCGAAGGCAAGCTCGCCG
TCGAAGTGTCGCACCACCTTAAGGGGGCGCTCTCCCCCGGCGTTCGCGGC
ACGCAGTGGCAGCACTTTCACCAACCGTCGACTCCTTCGAAGGCGAACAA
CGTCCCGTCAACGCCGCCGTCGATCCCTTTCATCGGCTCCGCCGGGGAAA
CCGCCGCCGCCGCCGCCGGGCGTGCCGTTGCCGGTGCCGATGGTCCGGTG
CTTCCCCTCTCCCCTTCCGCTACGGCGGCGCGCTCGATGAACGCGTTGAG
CCACCCCACCTTCGACCGCGGCACCGGCTTCTCTCTCTCCACGGCCAGAA
GAGTCTCCGTGAGAGCCGTTCGAGCAAAGAGCGGCGGCGGCGGCGGCGAT
GGGTTTACGCACGCGCATGCGCCTGCGGTGGTGCTGCGCGTGCCCCCGGG
GAGACCGAGCAGTGCGAGGAAGCTTACGGCAAGTGGCAGGCGGGAGGCGC
ATGAGCGAGGGGACCTTGAGCTGGACGTGGCGGAGGTACGTGTTAGCCTA
GGGTCGGTGAACAAGTTTTTGTGGGGGGGAATCAACCGGGGCATCAAACT
TCTTTGTCTGCTCTGCTTCTATGCAGACTAACGTTCAAGATTCGAGAGTT
GAACGTGTTTTTGAGGCAAGCGTGGTTTGTCAGACCCCCCGTGGTTCAGT
CCCGGATGAAAGCCGCCGTGTGGCCTTCTTGAAGGTTCTACATCTACCAA
CTCTTTCGGTTCGACCATTGGCCTCGTGTCCTGAGTCCCGTTTCAGCACG
CTGCCAATCTTTTCCTTGCCATCGACAGCCGCAGCGAAACGCTTGCTTGG
TTGATACGTTGAATAGCTATTTGGTCGTATGCAGTGGGCCAGACTTCATA
CCCGATCGTTCCGGAACGTGTGGTGCAAACCAATCGTGGAACCGCCCCCC
GGACCCGCGTACCATTGGGGTGACACTATTTTACCGCCGTAGATAGATAG
GCGTCAACCGCTTCCCGCCCCAGCTATTCACCGCGGATTCCACGAAAAGA
CCAACCACTACCCGCTGTGCTTCATGCGCTCCTGTTGGCCCTCTTCCGTT
TGGTTTACACCCGTACCACAAGGTGTCTCCTTACCCGAAGTGCGGTAGCA
GGGAGTCGGAGAGGAGAGCCTCGTTCTCGTCTTGCGAGTCGGAAACACCC
AAGCGCGGCCGGTCTCCGCCGTTTGTGGCGGCGGGGCTGACGCTGCTGCC
CCCGATAAGCTGCGACGAGGCGGTTTCGTGGGAGTTCGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16450:1..1340+

>mRNA_E-fasciculatus_F_contig16450.4364.1 ID=mRNA_E-fasciculatus_F_contig16450.4364.1|Name=mRNA_E-fasciculatus_F_contig16450.4364.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1506bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16450:1..1340+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGCCTTCCTCACAGCGGCACCGTCGGAGGCGTTCCCGGGGAGAAAGAAAA
CGCCGGCGCGGAGGCCCGCGCCGCCGCCGTCGCCGAAGGCAAGCTCGCCG
TCGAAGTGTCGCACCACCTTAAGGGGGCGCTCTCCCCCGGCGTTCGCGGC
ACGCAGTGGCAGCACTTTCACCAACCGTCGACTCCTTCGAAGGCGAACAA
CGTCCCGTCAACGCCGCCGTCGATCCCTTTCATCGGCTCCGCCGGGGAAA
CCGCCGCCGCCGCCGCCGGGCGTGCCGTTGCCGGTGCCGATGGTCCGGTG
CTTCCCCTCTCCCCTTCCGCTACGGCGGCGCGCTCGATGAACGCGTTGAG
CCACCCCACCTTCGACCGCGGCACCGGCTTCTCTCTCTCCACGGCCAGAA
GAGTCTCCGTGAGAGCCGTTCGAGCAAAGAGCGGCGGCGGCGGCGGCGAT
GGGTTTACGCACGCGCATGCGCCTGCGGTGGTGCTGCGCGTGCCCCCGGG
GAGACCGAGCAGTGCGAGGAAGCTTACGGCAAGTGGCAGGCGGGAGGCGC
ATGAGCGAGGGGACCTTGAGCTGGACGTGGCGGAGCGCCTTCCTCACAGC
GGCACCGTCGGAGGCGTTCCCGGGGAGAAAGAAAACGCCGGCGCGGAGGC
CCGCGCCGCCGCCGTCGCCGAAGGCAAGCTCGCCGTCGAAGTGTCGCACC
ACCTTAAGGGGGCGCTCTCCCCCGGCGTTCGCGGCACGCAGTGGCAGCAC
TTTCACCAACCGTCGACTCCTTCGAAGGCGAACAACGTCCCGTCAACGCC
GCCGTCGATCCCTTTCATCGGCTCCGCCGGGGAAACCGCCGCCGCCGCCG
CCGGGCGTGCCGTTGCCGGTGCCGATGGTCCGGTGCTTCCCCTCTCCCCT
TCCGCTACGGCGGCGCGCTCGATGAACGCGTTGAGCCACCCCACCTTCGA
CCGCGGCACCGGCTTCTCTCTCTCCACGGCCAGAAGAGTCTCCGTGAGAG
CCGTTCGAGCAAAGAGCGGCGGCGGCGGCGGCGATGGGTTTACGCACGCG
CATGCGCCTGCGGTGGTGCTGCGCGTGCCCCCGGGGAGACCGAGCAGTGC
GAGGAAGCTTACGGCAAGTGGCAGGCGGGAGGCGCATGAGCGAGGGGACC
TTGAGCTGGACGTGGCGGAGGTGTCTCCTTACCCGAAGTGCGGTAGCAGG
GAGTCGGAGAGGAGAGCCTCGTTCTCGTCTTGCGAGTCGGAAACACCCAA
GCGCGGCCGGTCTCCGCCGTTTGTGGCGGCGGGGCTGACGCTGCTGCCCC
CGATAAGCTGCGACGAGGCGGTTTCGTGGGAGTTCGAGGTGTCTCCTTAC
CCGAAGTGCGGTAGCAGGGAGTCGGAGAGGAGAGCCTCGTTCTCGTCTTG
CGAGTCGGAAACACCCAAGCGCGGCCGGTCTCCGCCGTTTGTGGCGGCGG
GGCTGACGCTGCTGCCCCCGATAAGCTGCGACGAGGCGGTTTCGTGGGAG
TTCGAG
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