mRNA_E-fasciculatus_F_contig16440.4360.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig16440.4360.1 vs. uniprot
Match: A0A6H5KU59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU59_9PHAE) HSP 1 Score: 553 bits (1424), Expect = 1.420e-187 Identity = 378/560 (67.50%), Postives = 397/560 (70.89%), Query Frame = 1
Query: 10 GEECGGGREEGWVRPEIDVADLVMDNNEFYTPHGKGGGDGDYXXXXXXXXCGFDDXSSTYSSHTISNNKALRDAVVIXXVASAEMRALQXXXXXXXXXXXX------NRSDSCRRLRFDTAADEGSVARGGFTPAADVDGNDHPSFPRKEGRLEAAAKAGVAAAAAGAKSSTGLSAALFRDETSPLPPGGGVNTPGKDSAGVWRPSAGSNPANFRDNRNHYSRENDRAVGASAASAGXXXXXXXXVPPTPRSLPGLLSMSFDNGMMVEEGLRQSQPRLSPPTVLERSQERRASEQHKAWQXXXXXXXXXXXXXXX-GSSAVSTITSGSSSGSHDFDEYVYDGGASDGRVGRHQQRIAAGAARGAGDCTLRPFLSYASIMTSCGAG-SSGEFAPGDSPTLPPGLNGNRDDADTAPPTAGANXXXXXX------AGAATGKDEAETAPQLQQTDNFDTGRLTDTVGWEGSPKSRGGVSDGVSGNKARGVVDRANFDTAPFFVCGDKAPR-----GGAGARGGVGMTGVPTGLFDSTKKWFDSVSKGVVEGGDQREVVGMVEN 1632
GEE GGGREEGWVRPEIDVADLVMDNNEFYTPHGK G XXXXXXXX X HTIS NKALRDAV XX XXXXXXXXXXXX NRSDSCRR RFDTAADEGSVARGG ADVD N HPS PRK+G+LEAAAKA GLSA LFRDET PLPPGGGV TPGKDS GVWR SAG+NP N RDNR + + G+ AA+A +PPTPRSLPGLLSMSFDN MMVEEGLRQSQPRLSPP+VL RSQE XXXXXXXXXX GSS VSTITSGSSSGSHDFD+ YDGGA+D RVGRHQQRIAA RGAGDCTLRPFLSYASIM+SCG G SSGE APGDSPTLP LN XXXXXX A ATGKDEA+T P LQ D+FDTGRLTDTVGWEGSPKSRGGV DGVSG KAR VVDRANFDTAP CGDKA GGAGARGG G+TG PT LFDSTKKWF S+ KG VEGG +REVVG+V+N
Sbjct: 161 GEELGGGREEGWVRPEIDVADLVMDNNEFYTPHGKSGXXXXXXXXXXXXXXXXXXXXXXXXXHTISTNKALRDAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGSNRSDSCRRPRFDTAADEGSVARGGLNSVADVDDNGHPSLPRKDGKLEAAAKAXXXXXXXXXXXXXGLSAGLFRDETPPLPPGGGVTTPGKDSTGVWRSSAGNNPTNVRDNR---AAGGGLSAGSQAAAA---PVASTPLPPTPRSLPGLLSMSFDNNMMVEEGLRQSQPRLSPPSVLRRSQEXXXXXXXXXXXXXXXXXXXXXLCSSSVGSSGVSTITSGSSSGSHDFDDCFYDGGANDDRVGRHQQRIAAKEERGAGDCTLRPFLSYASIMSSCGGGGSSGELAPGDSPTLPSALNXXXXXXXXXXXXXXXXXXXXXXXXXXXXADGATGKDEAKTPPSLQ-ADSFDTGRLTDTVGWEGSPKSRGGVGDGVSG-KAR-VVDRANFDTAPLLACGDKASTTVSRPGGAGARGGAGVTGAPTELFDSTKKWFGSMGKGDVEGGGRREVVGVVDN 711
BLAST of mRNA_E-fasciculatus_F_contig16440.4360.1 vs. uniprot
Match: D7G1W4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1W4_ECTSI) HSP 1 Score: 363 bits (931), Expect = 2.410e-113 Identity = 281/568 (49.47%), Postives = 292/568 (51.41%), Query Frame = 1
Query: 1 GQEGEECGGGREEGWVRPEIDVADLVMDNNEFYTPHGKGGGDGDYXXXXXXXXCGFDDXSSTYSSHTISNNKALRDAVVIXXVASAEMRALQXXXXXXXXXXXX------NRSDSCRRLRFDTAADEGSVARGGFTPAADVDGNDHPSFPRKEGRLEAAAKAGVAAAAAGAKSSTGLSAALFRDETSPLPPGGGVNTPGKDSAGVWRPSAGSNPANFRDNRNHYSRENDRAVGASAASAGXXXXXXXXVPPTPRSLPGLLSMSFDNGMMVEEGLRQSQPRLSPPTVLERSQERRASEQHKAWQXXXXXXXXXXXXXXXGSSAVSTITSGSSSGSHDFDEYVYDGGASDGRVGRHQQRIAAGAARGAGDCTLRPFLSYASIMTSCGAGSSGEFAPGDSPTLPPGLNGNRDDADTAPPTAGANXXXXXXAGA-----ATGKDEAETAPQLQQTDNFDTGRLTDTVGWEGSPKSRGGVSDGVSGNKARGVVDRANFDTAPFFVCGD-KAPR-----GGAGARGGVGMTGVPTGLFDSTKKWFDSVSKGVVEGGDQREVVGMVENDSXXXXG 1653
GQEGEE GGGREEGW ALRDAVVI VASAEM+ALQ XXXXXXXXXX NRSD CRR RFDTAADEGSVARGG TPAADV NDHPS PRK+GRLEAAAKA GLSA LFRDET PPGGGV TPGKDSAGVWRPSAG+NPANF ++ + A +A VPPTP SLPGLLSMSFDN MMVEEGLRQSQPRLSPP+VLERSQE SIM+SCG XXXXXX ATGKDEAET P LQ DNFDTGRLTDTVGWEGSPKSRGGV DGVSG KAR VVDRANFDTAPFF CGD KA GGAGARGG GMTG PTGLFDSTKKWFDSV K VVE G QREVVG+V+N S G
Sbjct: 332 GQEGEEFGGGREEGW---------------------------------------------------------ALRDAVVIVAVASAEMKALQRKXXXXXXXXXXXXXXXSNRSDFCRRPRFDTAADEGSVARGGLTPAADVYDNDHPSLPRKDGRLEAAAKAXXXXXXXXXXXXXGLSAGLFRDETPTPPPGGGVTTPGKDSAGVWRPSAGNNPANF-----WHNGAAGGGLSAGPQAAAVAPVASTPVPPTPMSLPGLLSMSFDNNMMVEEGLRQSQPRLSPPSVLERSQE--------------------------------------------------------------------------------------SIMSSCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGKDEAETPPPLQ-ADNFDTGRLTDTVGWEGSPKSRGGVGDGVSG-KAR-VVDRANFDTAPFFACGDGKASTTVSRPGGAGARGGAGMTGAPTGLFDSTKKWFDSVGKCVVEAGGQREVVGVVDNGSNAQLG 748 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16440.4360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig16440.4360.1 >prot_E-fasciculatus_F_contig16440.4360.1 ID=prot_E-fasciculatus_F_contig16440.4360.1|Name=mRNA_E-fasciculatus_F_contig16440.4360.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=551bp GQEGEECGGGREEGWVRPEIDVADLVMDNNEFYTPHGKGGGDGDYNNNNNback to top mRNA from alignment at E-fasciculatus_F_contig16440:1107..2759- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig16440.4360.1 ID=mRNA_E-fasciculatus_F_contig16440.4360.1|Name=mRNA_E-fasciculatus_F_contig16440.4360.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1653bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16440:1107..2759- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16440:1107..2759- >mRNA_E-fasciculatus_F_contig16440.4360.1 ID=mRNA_E-fasciculatus_F_contig16440.4360.1|Name=mRNA_E-fasciculatus_F_contig16440.4360.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3306bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16440:1107..2759- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |