mRNA_E-fasciculatus_F_contig1644.4359.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1644.4359.1
Unique NamemRNA_E-fasciculatus_F_contig1644.4359.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1644.4359.1 vs. uniprot
Match: A0A6H5KAA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAA0_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 4.630e-37
Identity = 88/140 (62.86%), Postives = 100/140 (71.43%), Query Frame = 1 
Query:  430 MRPYPVAGDDTGTGDPTTPEGDNNGKDEQIGHHAATASASTPQAAEDFVETIVGGSDGGYSPNLS---SQSGIKALENEAPTELDGDSTSRGSPIGGVPATSPILLSTPPVPLGDRGAVASASPPQATDDSVGVSVGGSG 840
            MRPYPVAG+DT  GDP TPE D++GKDE+  H  A ASA +PQ  +D V T VGGS G +SP L    SQSG++ L NE  TELDG STS GS  G VP  SP LLST P PLG    +A+ASPPQATDDSVG+SVGGSG
Sbjct:    1 MRPYPVAGNDTSAGDPVTPESDDSGKDERNDHQPAIASAPSPQVTDDSVGTSVGGSGGDHSPKLPLEPSQSGVELLGNEVRTELDGGSTSHGSSTGDVPVASPALLSTSP-PLGHGAGIAAASPPQATDDSVGISVGGSG 139
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1644.4359.1 vs. uniprot
Match: D7FN11_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN11_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 1.570e-26
Identity = 175/328 (53.35%), Postives = 192/328 (58.54%), Query Frame = 1 
Query:    1 DDIGGADGEQAHDQVILSEGAGEEEEGAAHQQRLEVVQQRDGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEEEEEEXXXXXXXXXXXXXXXXXXXXXDAVDNT----KPIPMRPYPVAGDDTGTGDPTTPEGDNNGKDEQIGHHAATASASTPQ-----AAEDFVETIVGGSDGGYSPNLSSQSGIKALENEAPTELDGDSTSRGSPIGG---------------------------------------VPATSPILLSTPPVPLGDRGAVASASPPQATDDSVGVSVGGSG 840
            D+IGG  G+QA D  +LSE +  EEEGAAHQQRLEVVQ + GD                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  E   EXXXXXXXXXXXXXXXXXXXXX    +T    KP+PMRPYPVAGDDT  GDP TPE D +GKDE+  H  A ASA +PQ     AA+D   T VGGS  G++P L S  G++ L NE P+ELD                                                   VP TS  LLST P P G R A+A AS PQAT DSVG SVGGSG
Sbjct:    3 DNIGGVGGKQAIDTALLSEDS--EEEGAAHQQRLEVVQLQKGDNMDDADEEQSFDTILPGGPEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVVVEXXXXXXXXXXXXXXXXXXXXXXXXGDTDGIAKPLPMRPYPVAGDDTSAGDPVTPESDYSGKDERNDHQPAIASAPSPQVTDDSAADDPTGTSVGGSGRGHTPKLPSTGGMEMLGNEFPSELDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPVTSLSLLSTSPAPPGHRAAIAVASSPQATRDSVGTSVGGSG 328
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1644.4359.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KAA0_9PHAE4.630e-3762.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FN11_ECTSI1.570e-2653.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1644contigE-fasciculatus_F_contig1644:2887..3843 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size840
Cds size840
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928114.7505982-CDS-E-fasciculatus_F_contig1644:2886..34401622928114.7505982-CDS-E-fasciculatus_F_contig1644:2886..3440Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1644 2887..3440 -
1695995824.6709979-CDS-E-fasciculatus_F_contig1644:2886..34401695995824.6709979-CDS-E-fasciculatus_F_contig1644:2886..3440Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1644 2887..3440 -
1622928114.7659528-CDS-E-fasciculatus_F_contig1644:3557..38431622928114.7659528-CDS-E-fasciculatus_F_contig1644:3557..3843Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1644 3558..3843 -
1695995824.6845322-CDS-E-fasciculatus_F_contig1644:3557..38431695995824.6845322-CDS-E-fasciculatus_F_contig1644:3557..3843Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1644 3558..3843 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1644.4359.1prot_E-fasciculatus_F_contig1644.4359.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1644 2887..3843 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1644.4359.1

>prot_E-fasciculatus_F_contig1644.4359.1 ID=prot_E-fasciculatus_F_contig1644.4359.1|Name=mRNA_E-fasciculatus_F_contig1644.4359.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=280bp
DDIGGADGEQAHDQVILSEGAGEEEEGAAHQQRLEVVQQRDGDDSGGADG
EQAHDTVLLSGGSEEEEEGAARHEGLEVVQPQEGDDIGGADGEQAAIDTV
LLSGSSEEEEEEEVAAHQQRLEVVQWQQGANIGDAVDNTKPIPMRPYPVA
GDDTGTGDPTTPEGDNNGKDEQIGHHAATASASTPQAAEDFVETIVGGSD
GGYSPNLSSQSGIKALENEAPTELDGDSTSRGSPIGGVPATSPILLSTPP
VPLGDRGAVASASPPQATDDSVGVSVGGSG
back to top

mRNA from alignment at E-fasciculatus_F_contig1644:2887..3843-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1644.4359.1 ID=mRNA_E-fasciculatus_F_contig1644.4359.1|Name=mRNA_E-fasciculatus_F_contig1644.4359.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=957bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1644:2887..3843- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GACGACATCGGCGGCGCTGACGGGGAGCAAGCACACGATCAGGTGATACT
GTCTGAGGGTGCCGGCGAGGAGGAGGAGGGGGCAGCACACCAGCAGAGAC
TGGAGGTGGTGCAACAGCGAGACGGCGACGATAGCGGTGGCGCTGACGGG
GAACAAGCACATGATACGGTGCTGCTTTCTGGAGGTTCTGAGGAGGAAGA
GGAGGGGGCAGCACGGCATGAGGGACTAGAGGTAGTGCAACCGCAGGAGG
GTGACGACATCGGTGGCGCTGACGGGGAGCAAGCAGGTGATACGGTAATG
CTGTCGGAGGGTTCTGAGGGGGAGGGGGCAGCACACCAGCAGGGACTAGA
GGTAGTGCAACAGCGAAACGGTGACGACATCGATGGCGCTGACGGGGTGC
AAGCGATTGATACGGTGCTGCTGTCTGGGAGTTCTGAGGAGGAGGAGGAG
GAGGAGGTGGCAGCACACCAGCAGAGGCTAGAGGTAGTGCAGTGGCAGCA
GGGTGCCAACATTGGTGACGCTGTTGACAATACGAAACCGATACCAATGA
GGCCCTACCCTGTAGCCGGAGATGACACCGGTACCGGTGATCCAACGACA
CCCGAGGGCGACAACAACGGAAAGGATGAGCAAATCGGTCATCACGCCGC
TACCGCTTCGGCTTCGACTCCCCAGGCTGCTGAAGACTTCGTGGAAACCA
TTGTCGGCGGCAGCGATGGCGGTTATTCCCCTAACCTTTCCTCCCAGAGC
GGGATTAAGGCTCTCGAGAATGAGGCCCCAACGGAGCTTGACGGCGACTC
CACGAGCCGCGGCTCGCCGATAGGTGGCGTTCCGGCCACATCGCCTATTC
TGCTGTCTACACCGCCTGTTCCGCTCGGTGATCGGGGCGCTGTCGCTTCG
GCTTCGCCCCCCCAGGCTACCGACGACTCAGTGGGAGTCAGTGTCGGCGG
CAGCGGT
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1644:2887..3843-

>mRNA_E-fasciculatus_F_contig1644.4359.1 ID=mRNA_E-fasciculatus_F_contig1644.4359.1|Name=mRNA_E-fasciculatus_F_contig1644.4359.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1680bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1644:2887..3843- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GACGACATCGGCGGCGCTGACGGGGAGCAAGCACACGATCAGGTGATACT
GTCTGAGGGTGCCGGCGAGGAGGAGGAGGGGGCAGCACACCAGCAGAGAC
TGGAGGTGGTGCAACAGCGAGACGGCGACGATAGCGGTGGCGCTGACGGG
GAACAAGCACATGATACGGTGCTGCTTTCTGGAGGTTCTGAGGAGGAAGA
GGAGGGGGCAGCACGGCATGAGGGACTAGAGGTAGTGCAACCGCAGGAGG
GTGACGACATCGGTGGCGCTGACGGGGAGCAAGCAGGACGACATCGGCGG
CGCTGACGGGGAGCAAGCACACGATCAGGTGATACTGTCTGAGGGTGCCG
GCGAGGAGGAGGAGGGGGCAGCACACCAGCAGAGACTGGAGGTGGTGCAA
CAGCGAGACGGCGACGATAGCGGTGGCGCTGACGGGGAACAAGCACATGA
TACGGTGCTGCTTTCTGGAGGTTCTGAGGAGGAAGAGGAGGGGGCAGCAC
GGCATGAGGGACTAGAGGTAGTGCAACCGCAGGAGGGTGACGACATCGGT
GGCGCTGACGGGGAGCAAGCAGCGATTGATACGGTGCTGCTGTCTGGGAG
TTCTGAGGAGGAGGAGGAGGAGGAGGTGGCAGCACACCAGCAGAGGCTAG
AGGTAGTGCAGTGGCAGCAGGGTGCCAACATTGGTGACGCTGTTGACAAT
ACGAAACCGATACCAATGAGGCCCTACCCTGTAGCCGGAGATGACACCGG
TACCGGTGATCCAACGACACCCGAGGGCGACAACAACGGAAAGGATGAGC
AAATCGGTCATCACGCCGCTACCGCTTCGGCTTCGACTCCCCAGGCTGCT
GAAGACTTCGTGGAAACCATTGTCGGCGGCAGCGATGGCGGTTATTCCCC
TAACCTTTCCTCCCAGAGCGGGATTAAGGCTCTCGAGAATGAGGCCCCAA
CGGAGCTTGACGGCGACTCCACGAGCCGCGGCTCGCCGATAGGTGGCGTT
CCGGCCACATCGCCTATTCTGCTGTCTACACCGCCTGTTCCGCTCGGTGA
TCGGGGCGCTGTCGCTTCGGCTTCGCCCCCCCAGGCTACCGACGACTCAG
TGGGAGTCAGTGTCGGCGGCAGCGGTCGATTGATACGGTGCTGCTGTCTG
GGAGTTCTGAGGAGGAGGAGGAGGAGGAGGTGGCAGCACACCAGCAGAGG
CTAGAGGTAGTGCAGTGGCAGCAGGGTGCCAACATTGGTGACGCTGTTGA
CAATACGAAACCGATACCAATGAGGCCCTACCCTGTAGCCGGAGATGACA
CCGGTACCGGTGATCCAACGACACCCGAGGGCGACAACAACGGAAAGGAT
GAGCAAATCGGTCATCACGCCGCTACCGCTTCGGCTTCGACTCCCCAGGC
TGCTGAAGACTTCGTGGAAACCATTGTCGGCGGCAGCGATGGCGGTTATT
CCCCTAACCTTTCCTCCCAGAGCGGGATTAAGGCTCTCGAGAATGAGGCC
CCAACGGAGCTTGACGGCGACTCCACGAGCCGCGGCTCGCCGATAGGTGG
CGTTCCGGCCACATCGCCTATTCTGCTGTCTACACCGCCTGTTCCGCTCG
GTGATCGGGGCGCTGTCGCTTCGGCTTCGCCCCCCCAGGCTACCGACGAC
TCAGTGGGAGTCAGTGTCGGCGGCAGCGGT
back to top