mRNA_E-fasciculatus_F_contig1644.4358.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1644.4358.1
Unique NamemRNA_E-fasciculatus_F_contig1644.4358.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1644.4358.1 vs. uniprot
Match: A0A6H5KAA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAA0_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 4.240e-31
Identity = 91/163 (55.83%), Postives = 100/163 (61.35%), Query Frame = 1 
Query:    1 GSDGDCADDDASRPFEQEHARKEVDGQTSQGAPTVKEIDETQGHEEEEVPTGGVPATSPTLQSTSPAPLPTEHGTSASSSGAQTGTGGVFGGDCERANDC--------PSRPSSQEHARGEQTTPVTKV---TLKQEXXXXXXALLLRARIEHTARRSAGQRP 456
            G  GD A D  SRPFEQEH RKEV  QTSQGAPT+KEID TQ  EEEE  T GVPATSP L ST   PL TEHGT ASS+G +TG GG  GGD    +DC        PSRP  QE AR EQTTP TK    T K+E        LLR   +  AR+ A ++P
Sbjct:  420 GGGGDRAKDGPSRPFEQEHGRKEVHDQTSQGAPTIKEIDATQVQEEEEALTRGVPATSPALLSTPHFPLFTEHGTKASSNGRRTGAGGGLGGDGAGGSDCDRGDRANDPSRPLEQERARDEQTTPFTKEINETHKREEDEQALRGLLRPFGQERARKEADEQP 582
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BLAST of mRNA_E-fasciculatus_F_contig1644.4358.1 vs. uniprot
Match: D7FN12_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN12_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 5.020e-13
Identity = 74/98 (75.51%), Postives = 78/98 (79.59%), Query Frame = 3 
Query:  543 MDLFAEARVAWKDAQVMAEGKERELASEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATEARMMKTEAGGRGGFGSLQRRLEDARRG 836
            MDLF EARVAWKDA+V+AEGK+RELASE+               XXXXXXXXXXXXXXXXXXXXXXXXA EARMMKTEAGG  GFGSLQ RLEDARRG
Sbjct:    1 MDLFKEARVAWKDARVVAEGKDRELASEIAAREAAERNAKRYTDXXXXXXXXXXXXXXXXXXXXXXXXAAEARMMKTEAGG--GFGSLQHRLEDARRG 96
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1644.4358.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KAA0_9PHAE4.240e-3155.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FN12_ECTSI5.020e-1375.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1644contigE-fasciculatus_F_contig1644:1816..2685 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size838
Cds size717
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1644.4358.1prot_E-fasciculatus_F_contig1644.4358.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1644 1935..2685 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928114.5709617-UTR-E-fasciculatus_F_contig1644:1815..19341622928114.5709617-UTR-E-fasciculatus_F_contig1644:1815..1934Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1644 1816..1934 -
1695995824.6369207-UTR-E-fasciculatus_F_contig1644:1815..19341695995824.6369207-UTR-E-fasciculatus_F_contig1644:1815..1934Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1644 1816..1934 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928114.698398-CDS-E-fasciculatus_F_contig1644:1934..22261622928114.698398-CDS-E-fasciculatus_F_contig1644:1934..2226Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1644 1935..2226 -
1695995824.6467826-CDS-E-fasciculatus_F_contig1644:1934..22261695995824.6467826-CDS-E-fasciculatus_F_contig1644:1934..2226Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1644 1935..2226 -
1622928114.7154877-CDS-E-fasciculatus_F_contig1644:2260..26851622928114.7154877-CDS-E-fasciculatus_F_contig1644:2260..2685Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1644 2261..2685 -
1695995824.658362-CDS-E-fasciculatus_F_contig1644:2260..26851695995824.658362-CDS-E-fasciculatus_F_contig1644:2260..2685Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1644 2261..2685 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1644.4358.1

>prot_E-fasciculatus_F_contig1644.4358.1 ID=prot_E-fasciculatus_F_contig1644.4358.1|Name=mRNA_E-fasciculatus_F_contig1644.4358.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=239bp
GSDGDCADDDASRPFEQEHARKEVDGQTSQGAPTVKEIDETQGHEEEEVP
TGGVPATSPTLQSTSPAPLPTEHGTSASSSGAQTGTGGVFGGDCERANDC
PSRPSSQEHARGEQTTPVTKVTLKQEEEEEEDALLLRARIEHTARRSAGQ
RPWKASSGGWPTAAAGTPPPARPPSATPRGAWTCSRKRGLRGRTPRSWRR
ARNGSWLPRSPLVKPPSSTPSGTRTCSRRPGPRGRTPR*
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mRNA from alignment at E-fasciculatus_F_contig1644:1816..2685-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1644.4358.1 ID=mRNA_E-fasciculatus_F_contig1644.4358.1|Name=mRNA_E-fasciculatus_F_contig1644.4358.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=870bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1644:1816..2685- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCAGCGACGGCGATTGCGCTGACGACGACGCTTCTCGTCCGTTCGAACA
AGAGCATGCGAGGAAGGAGGTGGACGGGCAGACCAGCCAGGGGGCGCCCA
CCGTCAAGGAGATCGACGAGACACAAGGGCACGAGGAAGAGGAGGTGCCT
ACAGGCGGCGTTCCGGCCACATCGCCTACCCTACAATCTACATCGCCTGC
TCCACTCCCTACCGAGCACGGTACCAGTGCTTCTTCCAGCGGGGCTCAAA
CGGGTACGGGAGGAGTCTTCGGCGGCGACTGTGAACGTGCTAACGACTGC
CCTTCCCGTCCCTCCTCACAAGAACACGCGAGAGGTGAGCAGACCACACC
CGTCACCAAGGTAACGTTGAAGCAGGAGGAAGAGGAAGAGGAGGATGCGC
TTCTTCTGCGCGCGAGAATTGAGCAGCTAGAGACAAGCGCCCAGACCGAG
GCCTCCAAGCACGGCGAGGCGGAGCGCCGGGCAGAGACCCTGGAAGGCGA
GCTCCGGGGGCTGGCCGACCGCTGCCGCCGGGACACCGCCGCCCGCGAGG
CCGCCGAGCGCAACGCCCCGCGGTGCATGGACCTGTTCGCGGAAGCGAGG
GTTGCGTGGAAGGACGCCCAGGTCATGGCGGAGGGCAAGGAACGGGAGCT
GGCTTCCGAGGTCGCCGCTCGTGAAGCCGCCGAGTTCAACACCAAGCGGT
ACACGGACCTGTTCGCGGAGGCCAGGGCCGCGTGGACGAACACCCAGGTG
ATCGTGGAGAACAAGGAGAGGGAGCTCGCGGCCACCGAGGCGAGGATGAT
GAAAACGGAGGCCGGCGGCCGCGGCGGCTTCGGCTCCCTGCAGCGCCGCC
TGGAGGACGCCAGGAGGGGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1644:1816..2685-

>mRNA_E-fasciculatus_F_contig1644.4358.1 ID=mRNA_E-fasciculatus_F_contig1644.4358.1|Name=mRNA_E-fasciculatus_F_contig1644.4358.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1434bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1644:1816..2685- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCAGCGACGGCGATTGCGCTGACGACGACGCTTCTCGTCCGTTCGAACA
AGAGCATGCGAGGAAGGAGGTGGACGGGCAGACCAGCCAGGGGGCGCCCA
CCGTCAAGGAGATCGACGAGACACAAGGGCACGAGGAAGAGGAGGTGCCT
ACAGGCGGCGTTCCGGCCACATCGCCTACCCTACAATCTACATCGCCTGC
TCCACTCCCTACCGAGCACGGTACCAGTGCTTCTTCCAGCGGGGCTCAAA
CGGGTACGGGAGGAGTCTTCGGCGGCGACTGTGAACGTGCTAACGACTGC
CCTTCCCGTCCCTCCTCACAAGAACACGCGAGAGGTGAGCAGACCACACC
CGTCACCAAGGTAACGTTGAAGCAGGAGGAAGAGGAAGAGGAGGATGCGC
TTCTTCTGCGCGCGAGAATTGAGCAGGCAGCGACGGCGATTGCGCTGACG
ACGACGCTTCTCGTCCGTTCGAACAAGAGCATGCGAGGAAGGAGGTGGAC
GGGCAGACCAGCCAGGGGGCGCCCACCGTCAAGGAGATCGACGAGACACA
AGGGCACGAGGAAGAGGAGGTGCCTACAGGCGGCGTTCCGGCCACATCGC
CTACCCTACAATCTACATCGCCTGCTCCACTCCCTACCGAGCACGGTACC
AGTGCTTCTTCCAGCGGGGCTCAAACGGGTACGGGAGGAGTCTTCGGCGG
CGACTGTGAACGTGCTAACGACTGCCCTTCCCGTCCCTCCTCACAAGAAC
ACGCGAGAGGTGAGCAGACCACACCCGTCACCAAGGTAACGTTGAAGCAG
GAGGAAGAGGAAGAGGAGGATGCGCTTCTTCTGCGCGCGAGAATTGAGCA
CACGGCGAGGCGGAGCGCCGGGCAGAGACCCTGGAAGGCGAGCTCCGGGG
GCTGGCCGACCGCTGCCGCCGGGACACCGCCGCCCGCGAGGCCGCCGAGC
GCAACGCCCCGCGGTGCATGGACCTGTTCGCGGAAGCGAGGGTTGCGTGG
AAGGACGCCCAGGTCATGGCGGAGGGCAAGGAACGGGAGCTGGCTTCCGA
GGTCGCCGCTCGTGAAGCCGCCGAGTTCAACACCAAGCGGTACACGGACC
TGTTCGCGGAGGCCAGGGCCGCGTGGACGAACACCCAGGTGACACGGCGA
GGCGGAGCGCCGGGCAGAGACCCTGGAAGGCGAGCTCCGGGGGCTGGCCG
ACCGCTGCCGCCGGGACACCGCCGCCCGCGAGGCCGCCGAGCGCAACGCC
CCGCGGTGCATGGACCTGTTCGCGGAAGCGAGGGTTGCGTGGAAGGACGC
CCAGGTCATGGCGGAGGGCAAGGAACGGGAGCTGGCTTCCGAGGTCGCCG
CTCGTGAAGCCGCCGAGTTCAACACCAAGCGGTACACGGACCTGTTCGCG
GAGGCCAGGGCCGCGTGGACGAACACCCAGGTGA
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