mRNA_E-fasciculatus_F_contig16437.4357.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16437.4357.1
Unique NamemRNA_E-fasciculatus_F_contig16437.4357.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16437.4357.1 vs. uniprot
Match: A0A6H5JRJ6_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ6_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 3.780e-9
Identity = 37/70 (52.86%), Postives = 44/70 (62.86%), Query Frame = 1 
Query:    1 MMIKNRGLPTALGGHCNKYLSSEADPVGRGGLGAELLHLL--EWPAAMDLVGTGES-GLARNLWGEETGG 201
            MMIKNRGLP ALGGH N+YL    + + R     +  H +  EWPAA+D V TGE  GL R+LWG E  G
Sbjct:  695 MMIKNRGLPAALGGHYNQYL---VESIQRDTADWDSSHPVFPEWPAAIDSVDTGERFGLERSLWGGERDG 761
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BLAST of mRNA_E-fasciculatus_F_contig16437.4357.1 vs. uniprot
Match: D7FWS6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWS6_ECTSI)

HSP 1 Score: 49.3 bits (116), Expect = 3.020e-6
Identity = 33/63 (52.38%), Postives = 41/63 (65.08%), Query Frame = 1 
Query:    1 MMIKNRGLPTALGGHCNKYLSSEADPVGRGGLGAELLHLL--EWPAAMDLVGTGE-SGLARNL 180
            M++KNRGLP ALGGH N+YL    + V R     E    +  ++PAAMD  GTGE SGLAR+L
Sbjct:    1 MLVKNRGLPAALGGHYNEYL---VELVQRATADWEASCPVPPQYPAAMDPEGTGERSGLARSL 60
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16437.4357.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JRJ6_9PHAE3.780e-952.863'-5' exonuclease domain-containing protein n=1 Ta... [more]
D7FWS6_ECTSI3.020e-652.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16437contigE-fasciculatus_F_contig16437:1103..1314 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size212
Cds size207
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928114.521668-CDS-E-fasciculatus_F_contig16437:1102..13091622928114.521668-CDS-E-fasciculatus_F_contig16437:1102..1309Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16437 1103..1309 +
1695995824.6149786-CDS-E-fasciculatus_F_contig16437:1102..13091695995824.6149786-CDS-E-fasciculatus_F_contig16437:1102..1309Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16437 1103..1309 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928114.534612-UTR-E-fasciculatus_F_contig16437:1309..13141622928114.534612-UTR-E-fasciculatus_F_contig16437:1309..1314Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16437 1310..1314 +
1695995824.625921-UTR-E-fasciculatus_F_contig16437:1309..13141695995824.625921-UTR-E-fasciculatus_F_contig16437:1309..1314Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16437 1310..1314 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16437.4357.1prot_E-fasciculatus_F_contig16437.4357.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16437 1103..1309 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16437.4357.1

>prot_E-fasciculatus_F_contig16437.4357.1 ID=prot_E-fasciculatus_F_contig16437.4357.1|Name=mRNA_E-fasciculatus_F_contig16437.4357.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=69bp
MMIKNRGLPTALGGHCNKYLSSEADPVGRGGLGAELLHLLEWPAAMDLVG
TGESGLARNLWGEETGGA*
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mRNA from alignment at E-fasciculatus_F_contig16437:1103..1314+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16437.4357.1 ID=mRNA_E-fasciculatus_F_contig16437.4357.1|Name=mRNA_E-fasciculatus_F_contig16437.4357.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=212bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16437:1103..1314+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATGATCAAGAACCGTGGCTTGCCCACGGCGCTGGGAGGACACTGCAA
CAAGTACCTTTCTTCGGAAGCTGATCCCGTGGGCCGCGGCGGACTGGGAG
CCGAGTTGCTCCATCTCCTGGAGTGGCCGGCCGCCATGGACTTAGTAGGC
ACGGGCGAGAGTGGGCTTGCTAGGAACTTATGGGGGGAAGAGACCGGGGG
GGCATGAGTTTC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16437:1103..1314+

>mRNA_E-fasciculatus_F_contig16437.4357.1 ID=mRNA_E-fasciculatus_F_contig16437.4357.1|Name=mRNA_E-fasciculatus_F_contig16437.4357.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=414bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16437:1103..1314+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATGATCAAGAACCGTGGCTTGCCCACGGCGCTGGGAGGACACTGCAA
CAAGTACCTTTCTTCGGAAGCTGATCCCGTGGGCCGCGGCGGACTGGGAG
CCGAGTTGCTCCATCTCCTGGAGTGGCCGGCCGCCATGGACTTAGTAGGC
ACGGGCGAGAGTGGGCTTGCTAGGAACTTATGGGGGGAAGAGACCGGGGG
GGCATGAATGATGATCAAGAACCGTGGCTTGCCCACGGCGCTGGGAGGAC
ACTGCAACAAGTACCTTTCTTCGGAAGCTGATCCCGTGGGCCGCGGCGGA
CTGGGAGCCGAGTTGCTCCATCTCCTGGAGTGGCCGGCCGCCATGGACTT
AGTAGGCACGGGCGAGAGTGGGCTTGCTAGGAACTTATGGGGGGAAGAGA
CCGGGGGGGCATGA
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