mRNA_E-fasciculatus_F_contig16430.4356.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16430.4356.1
Unique NamemRNA_E-fasciculatus_F_contig16430.4356.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig16430.4356.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 2.800e-33
Identity = 66/78 (84.62%), Postives = 69/78 (88.46%), Query Frame = 3 
Query:  129 QAVGTRDGNGGRMQRAPSSGGQAGLAAAATTVEPTTTERLEHVGKLLAEKRPWPAFLHIGARATEEWEACPTPAQEAL 362
            Q  G RDG GG MQRAP+SGGQAGLAAAA  VEPTT ERL+HVGKLLAEK+PWPAFLHIGARATEEWEACPTP QEAL
Sbjct:   32 QTAGVRDGIGGEMQRAPASGGQAGLAAAAV-VEPTTVERLDHVGKLLAEKKPWPAFLHIGARATEEWEACPTPVQEAL 108
[Close]
BLAST of mRNA_E-fasciculatus_F_contig16430.4356.1 vs. uniprot
Match: D7G720_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 2.820e-33
Identity = 66/78 (84.62%), Postives = 69/78 (88.46%), Query Frame = 3 
Query:  129 QAVGTRDGNGGRMQRAPSSGGQAGLAAAATTVEPTTTERLEHVGKLLAEKRPWPAFLHIGARATEEWEACPTPAQEAL 362
            QA G RDG GG MQRAP+SG QAGLAAAA  VEPTT ERL+HVGKLLAEK+PWPAFLHIGARATEEWEACPTP QEAL
Sbjct:   15 QAAGVRDGTGGEMQRAPASGDQAGLAAAAV-VEPTTVERLDHVGKLLAEKKPWPAFLHIGARATEEWEACPTPVQEAL 91
[Close]
BLAST of mRNA_E-fasciculatus_F_contig16430.4356.1 vs. uniprot
Match: D8LGG5_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG5_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 9.630e-28
Identity = 57/66 (86.36%), Postives = 58/66 (87.88%), Query Frame = 3 
Query:  165 MQRAPSSGGQAGLAAAATTVEPTTTERLEHVGKLLAEKRPWPAFLHIGARATEEWEACPTPAQEAL 362
            MQR P+S  QAGLA A T VEPTT ERLEHVGKLLAEKRPWPAFLHIGARATEEWEACPT AQEAL
Sbjct:    1 MQRVPASASQAGLAVATTAVEPTTVERLEHVGKLLAEKRPWPAFLHIGARATEEWEACPTLAQEAL 66
[Close]
BLAST of mRNA_E-fasciculatus_F_contig16430.4356.1 vs. uniprot
Match: D7FLM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLM4_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 1.150e-27
Identity = 53/66 (80.30%), Postives = 58/66 (87.88%), Query Frame = 3 
Query:  165 MQRAPSSGGQAGLAAAATTVEPTTTERLEHVGKLLAEKRPWPAFLHIGARATEEWEACPTPAQEAL 362
            MQRAP+ GGQAGLA   T VEPT+ +RL+HVGKLLAEK+PWPAFLHI ARATEEWEACPTP QEAL
Sbjct:    1 MQRAPTIGGQAGLA---TAVEPTSADRLDHVGKLLAEKKPWPAFLHITARATEEWEACPTPVQEAL 63
[Close]
BLAST of mRNA_E-fasciculatus_F_contig16430.4356.1 vs. uniprot
Match: D7G6W2_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6W2_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 8.330e-27
Identity = 56/66 (84.85%), Postives = 59/66 (89.39%), Query Frame = 3 
Query:  165 MQRAPSSGGQAGLAAAATTVEPTTTERLEHVGKLLAEKRPWPAFLHIGARATEEWEACPTPAQEAL 362
            MQRAP+SGGQAGL AA   VEPT  ERL+HVGKLLAEK+PWPAFLHIGARATEEWEACPTP QEAL
Sbjct:    1 MQRAPTSGGQAGLVAA---VEPTAAERLDHVGKLLAEKKPWPAFLHIGARATEEWEACPTPVQEAL 63
[Close]
BLAST of mRNA_E-fasciculatus_F_contig16430.4356.1 vs. uniprot
Match: D7FUT5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUT5_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 3.410e-25
Identity = 51/66 (77.27%), Postives = 55/66 (83.33%), Query Frame = 3 
Query:  165 MQRAPSSGGQAGLAAAATTVEPTTTERLEHVGKLLAEKRPWPAFLHIGARATEEWEACPTPAQEAL 362
            MQRAP++GGQ  + AA   VEPT  ERL+HVGKLLAEKRPWPAFL IGARA EEWEACPTP QEAL
Sbjct:    1 MQRAPANGGQEDVQAA---VEPTAAERLDHVGKLLAEKRPWPAFLQIGARANEEWEACPTPVQEAL 63
[Close]
BLAST of mRNA_E-fasciculatus_F_contig16430.4356.1 vs. uniprot
Match: A0A6H5KMV3_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMV3_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 7.770e-21
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 3 
Query:  189 GQAGLAAAATTVEPTTTERLEHVGKLLAEKRPWPAFLHIGARATEEWEACPTPAQEAL 362
            GQAGL AA   VEPT  ERL+HVG+LLAEK+PWPAFLH+GARAT+EWEACPTP QEAL
Sbjct:   14 GQAGLVAA---VEPTAVERLDHVGQLLAEKKPWPAFLHLGARATKEWEACPTPVQEAL 68
[Close]
BLAST of mRNA_E-fasciculatus_F_contig16430.4356.1 vs. uniprot
Match: A0A6H5KXS7_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 8.010e-15
Identity = 37/40 (92.50%), Postives = 37/40 (92.50%), Query Frame = 3 
Query:  243 RLEHVGKLLAEKRPWPAFLHIGARATEEWEACPTPAQEAL 362
            RLE VGKLLAEKRPWPAFLHI ARATEEWEACPT AQEAL
Sbjct:   15 RLERVGKLLAEKRPWPAFLHIEARATEEWEACPTVAQEAL 54
[Close]
BLAST of mRNA_E-fasciculatus_F_contig16430.4356.1 vs. uniprot
Match: A0A6H5JWJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWJ9_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 9.650e-7
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 3 
Query:  165 MQRAPSSGGQAGLAAAATTVEPTTTERLEHVGKLLAE 275
            MQRAP+SGGQAGL AA   VEPT  ER++HVGKLLAE
Sbjct:    1 MQRAPASGGQAGLVAA---VEPTAAERVDHVGKLLAE 34
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16430.4356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7G722_ECTSI2.800e-3384.62NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D7G720_ECTSI2.820e-3384.62NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D8LGG5_ECTSI9.630e-2886.36NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D7FLM4_ECTSI1.150e-2780.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G6W2_ECTSI8.330e-2784.85NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D7FUT5_ECTSI3.410e-2577.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KMV3_9PHAE7.770e-2179.31NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KXS7_9PHAE8.010e-1592.50NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5JWJ9_9PHAE9.650e-775.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16430contigE-fasciculatus_F_contig16430:296..2598 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size365
Cds size363
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16430.4356.1prot_E-fasciculatus_F_contig16430.4356.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16430 296..2598 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928114.390667-CDS-E-fasciculatus_F_contig16430:295..4231622928114.390667-CDS-E-fasciculatus_F_contig16430:295..423Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16430 296..423 +
1695995824.5841613-CDS-E-fasciculatus_F_contig16430:295..4231695995824.5841613-CDS-E-fasciculatus_F_contig16430:295..423Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16430 296..423 +
1622928114.4064536-CDS-E-fasciculatus_F_contig16430:1906..20201622928114.4064536-CDS-E-fasciculatus_F_contig16430:1906..2020Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16430 1907..2020 +
1695995824.5975409-CDS-E-fasciculatus_F_contig16430:1906..20201695995824.5975409-CDS-E-fasciculatus_F_contig16430:1906..2020Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16430 1907..2020 +
1622928114.421693-CDS-E-fasciculatus_F_contig16430:2477..25981622928114.421693-CDS-E-fasciculatus_F_contig16430:2477..2598Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16430 2478..2598 +
1695995824.6066368-CDS-E-fasciculatus_F_contig16430:2477..25981695995824.6066368-CDS-E-fasciculatus_F_contig16430:2477..2598Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16430 2478..2598 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16430.4356.1

>prot_E-fasciculatus_F_contig16430.4356.1 ID=prot_E-fasciculatus_F_contig16430.4356.1|Name=mRNA_E-fasciculatus_F_contig16430.4356.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=121bp
NNSQGRRSTIIARQQGVHCCTQTTGFSSTARPPPLPANRACHCKRSAHAT
VTAAGCNVPPPVEAKRALQQQQQRSSPPRQSGLSMLVSCSPKRGPGPPFS
TSELERQRSGRLAPPPPRRL*
back to top

mRNA from alignment at E-fasciculatus_F_contig16430:296..2598+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16430.4356.1 ID=mRNA_E-fasciculatus_F_contig16430.4356.1|Name=mRNA_E-fasciculatus_F_contig16430.4356.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2303bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16430:296..2598+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AACAACTCGCAGGGTAGGCGGTCAACAATCATAGCCAGGCAGCAGGGTGT
ACATTGTTGTACTCAAACGACGGGTTTCAGCTCCACCGCGCGTCCACCGC
CCCTTCCTGCGAATCGAGCCTGCCATTGGTGAGCTAGACTATTGCGGACA
GATTCGGGCGTTCCAGTAGATGCATTCCTCAGGCAACGACCTGGCTTTGC
GCATTCGTCGTGGAGCCGACAAATTGGCGAGACAGGAAGGCATCTGCCAT
TGCGCCCCAAAGAAGTTCTGTGCGTCGCCTCGCAAGCTATGTAGCATGCA
AGCGGATGTGTTTGATGTTGTGATTGTCGCGTCCCACGTTTTTTTCTGTT
TTTGCTCTTCCGCGTTGTTTGTTCTTCCGCCGAAGGCGGCCAATTCGTTG
CGTTATTTCGTTATTTCCGCCACGCGAGCATGCGAGCATGCCTTCTACTG
CTGCTGTCTTGTGCTGAGATGGCGATGGCGTGGGAAGCGCCTCAAATCGT
AGTGCAGCACCTTGTCGATCAACAAGTAGCAAGAGTCGTCCGTGAAGGCA
AGCTGCTGTGGTTATTTTTCTCGGCATGATTCAGCCCACGAATAGGTACA
AGTAGGTCCTGATTTACATACAATTACATAGTAGTGTCATGTGTCCACGG
GCCCTTCATATAGTAGTGGCATTTGGGGCATCTCACACCCTCAATAAGTG
GCAGTTCAACACGTCGTTTCACCATGCGCACCACCACACAACAAGCACAT
TGCAGTGGGAGCCACACCACACGGCGAGGCCGGGCGTTTTGTCGTGTCGC
ATTGATGGACGAGGCCGGACGTTTCCTCCGTAAGGCAAAGATCAGAGATG
GCATTCTTCGCAGCACATGCCGCTAGACCGCCACGGCAGTTGGACATGAC
CCTTTACCCAGTCACACTGCTGTAATGGAGTTGAATTGGTCGGGACGCCA
GTTGGTGCAAATCATTGTGACGGTTGGGATTGATGCGCCGGAGTGGGGTG
TGTTCGACGTTTGCAAGTTGGTTGCTCGAGTTGGTTTCGCGTCCCCTTTG
CTGTTTTCAGCATGTGTGTTTCGCTTGTGTTGCACCCCATCATGGCCCGC
CGGAAAACAAAACAAAACAAAAAGATGTGACTGCTGTACGTTGGGACACT
GTTTCTGGAGTCCGTCTGCACACAAAGGTAGGTTTCGAGCGCAGAAGACA
TGGTTGATATTTGCACGGGCAAGTGCCATTTCACATGTGATGCACAGGCA
CCTGCATTTTCACGCGGATCCTGCTGCACACCATCACTGACCCTATCCCT
ATACAACGCATGTGAGTGTATTGTATTTCCAACCAAAACCTGTGGGTGGC
GTAAAAGTCTCGAGCTTAATCTCCTCGATAGTGGCAACAGTACCACTATT
GGCGACTCAAAAGTGGTAATATCTCTATTGGCTATTCAACAGTGGTACTG
TTGCCACGGCTGTATCGACTGCCCTGAATAGCGGCATATTTTGCTCTTGT
CCCTGTATGCCACTATATCGGGACCACTACTATACTTCTATGAAGCATAT
GTTTTTTTAATTCTCGTGGGGTGCCTCTCTGCCACGTGTTTCGTGTGCTT
CTATGATACAGCAAGCGGTCGGCACACGCGACGGTAACGGCGGCAGGATG
CAACGTGCCCCCTCCAGTGGAGGCCAAGCGGGCCTTGCAGCAGCAGCAAC
AACGGTCGAGCCCACCACGACAGAGGTGCGTATACCGTAATAATCGGAGA
GATGGCACCCCCGTGTTAGCGTTTTTTCATAGCGTCTTTCTCAACAACCA
CGGGGGTGCCACTCCCGAAAAGGGTACAATAGTTTTGGAAACATGTCGTC
GAGAGCTTTCCCGAGAGATATCGGTTGGTGTTCGCAACCTCCTGGATAGT
TGTGGAGAAAGACGCTTTAAAAAAACGCTATTTAACACAGGGGTGCCATC
TCTCCGATTATTACGGTATCACAACAACCTACTGACACACCAACAGACGC
CATGATTGATCGAAGGTGTTTTTTGGCCGAACGTCGAACCGCCAGCTCAA
AAACCTCATAGAACCTGGTACAGCAGTAGTTCCATACAAATCGTGGGTGG
TTAAAGACTTCTACATGGAGGGCCCCTTGTTCCATACCCTCTTTCCCTCC
CTCCCTCTCCCTCTCCCTCCTCTCCTTCGCAGCGGCTTGAGCATGTTGGT
AAGCTGCTCGCCGAAAAGAGGCCCTGGCCCGCCTTTCTCCACATCGGAGC
TCGAGCGACAGAGGAGTGGGAGGCTTGCCCCACCCCCGCCCAGGAGGCTC
TGA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16430:296..2598+

>mRNA_E-fasciculatus_F_contig16430.4356.1 ID=mRNA_E-fasciculatus_F_contig16430.4356.1|Name=mRNA_E-fasciculatus_F_contig16430.4356.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=726bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16430:296..2598+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AACAACTCGCAGGGTAGGCGGTCAACAATCATAGCCAGGCAGCAGGGTGT
ACATTGTTGTACTCAAACGACGGGTTTCAGCTCCACCGCGCGTCCACCGC
CCCTTCCTGCGAATCGAGCCTGCCATTGAACAACTCGCAGGGTAGGCGGT
CAACAATCATAGCCAGGCAGCAGGGTGTACATTGTTGTACTCAAACGACG
GGTTTCAGCTCCACCGCGCGTCCACCGCCCCTTCCTGCGAATCGAGCCTG
CCATTGCAAGCGGTCGGCACACGCGACGGTAACGGCGGCAGGATGCAACG
TGCCCCCTCCAGTGGAGGCCAAGCGGGCCTTGCAGCAGCAGCAACAACGG
TCGAGCCCACCACGACAGAGCAAGCGGTCGGCACACGCGACGGTAACGGC
GGCAGGATGCAACGTGCCCCCTCCAGTGGAGGCCAAGCGGGCCTTGCAGC
AGCAGCAACAACGGTCGAGCCCACCACGACAGAGCGGCTTGAGCATGTTG
GTAAGCTGCTCGCCGAAAAGAGGCCCTGGCCCGCCTTTCTCCACATCGGA
GCTCGAGCGACAGAGGAGTGGGAGGCTTGCCCCACCCCCGCCCAGGAGGC
TCTGACGGCTTGAGCATGTTGGTAAGCTGCTCGCCGAAAAGAGGCCCTGG
CCCGCCTTTCTCCACATCGGAGCTCGAGCGACAGAGGAGTGGGAGGCTTG
CCCCACCCCCGCCCAGGAGGCTCTGA
back to top