mRNA_E-fasciculatus_F_contig1643.4353.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1643.4353.1
Unique NamemRNA_E-fasciculatus_F_contig1643.4353.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1643.4353.1 vs. uniprot
Match: A0A6H5KK30_9PHAE (RNase NYN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK30_9PHAE)

HSP 1 Score: 1139 bits (2947), Expect = 0.000e+0
Identity = 634/836 (75.84%), Postives = 681/836 (81.46%), Query Frame = 2 
Query:  446 MDWTPAASTPSSSSAVSYAEPSGTVRASPDDTMVSAHTGLNPAPPRDQADFPREHAAATAGTPRGGQSGQRGREGVVANQAVGPGAAVTVPSSSQRPGGGRDREKTLPAWTAAGPTALPDGSQQQISPFEANAQAQTPRRTGWYSSRPQQGAPSKPQVGPNDGDRNSRAKINDRNRNNYDEEPHRPLGAGATPDMDTLYSMTRESRTHTPAPRQPTTAVPRPSANPKSAGRGRGRERTLPAWMTAAEANPPGGLQQQAARGATGTG----PTGIFLSCPQQTTQTIAQGNNSIRNTSSEDNQMAKAAAMGTFHMGVGQHGNPQRQRRAPGGQGSRHD--ETFREQYPASAGMSMAGASEARPTT--------VAGHGRGLQVQRWVRDGTRDDVAPGGLLPYAQDASGSVPRASRPTG-HSSRPGHRTQSALPNRGGTSRYKAGTDRKGRRAAGIGTHQSERSSSTNPEIGSRHGNVGRIDGQSPAPAAAGSLNDAPENRLLVADPSSQHQGISTTAG----GGQSRAKRSREEEPTMTT---ASRARGDASGRQPAGLGGLLDVIRRTASLNLQPPAKKNKVALTKSSPPKNLVATRARFQIVHHHDAPKQEPS--VARRSKLPTLTTAGEVRDTNKSKGSSRAPLAGAALSCRTSRSTTPKKVVIDGDDVALCRWGADGSWSARGPLLAIQFFEQRGVPCVAFLPRESMASVTPRDGCNTAFQEARTDGAISEIPRGEKADLFILKHAVETNAHVVTNKNLSIHASSNEALASLGQTKQDLREYLSHNHVCYTFVRNEFKPDPETPFIRMLLNQAPTGSRGTHAGAKGGGPTKP 2881
            MDWTPA    SSSSA +Y E +G VRASPD+  V A TG N APPRD ADFPREHAA TAGTP GGQSGQRGREGVVA QAVG GAAVTV S + RP GGRD EKTLPAW AAGP ALP+  QQQ +P  ANA  QTPR TG YSSRPQQGAPSK Q GPNDGDRNSR+KI+DRNRNNYDEEPHR LGAGATPD+ T Y+M RESR  TPAPR P TA PRPSANP+S GRGRGRERTLPAWMTAAEA PPGGLQQQ+A G T  G    PTG F S PQ TTQT A G  SI+NTSSEDNQ A+AAA GTFH+GVG+HGN QRQ RAPGGQGS H   ET REQYP SAG+SMAG+S ARPTT        V GH RGL+V+RWVR  TRDD APGGL PY + AS S+PRAS PTG +SS PGHRTQ A+PN GG+SRYKAGT+RKGRRAAGIGTHQ ERS+STNPEIGS H N  RIDGQSP PA    LN APE  LL+ADPSSQHQ ++TTAG    G QSR KR REEEP M +   ASRARG ASGRQP+GLGGLLDVIRRTAS+NLQPPAKKNKVAL+KSSPPKNLVATRARFQIVHHHDAPKQ+    VA RSKLPTL TAGE R T+KSKGSSR PLAGAALS R SRSTTPKKVVIDG+DVALC  GA G WSA+G LLAIQFFE+RGVPCVAFLPRE MA V+PRDGCNTAFQEAR  GAI+EIPRGEKADL ILK+A+E+  HVVTNK LS HA+SNEALA LGQTKQDLREYLSH HVCYTFVRN+FKP+PETPFIRMLLNQAP GSR THA  KGGGPTKP
Sbjct:    1 MDWTPATVGSSSSSAANYGESTGMVRASPDEMTVFASTGRNVAPPRDPADFPREHAATTAGTPLGGQSGQRGREGVVARQAVGSGAAVTVLSRNHRPEGGRDGEKTLPAWMAAGPAALPERRQQQATPV-ANAPTQTPRPTGLYSSRPQQGAPSKKQAGPNDGDRNSRSKISDRNRNNYDEEPHRSLGAGATPDVSTPYAMARESRNDTPAPRTPITAAPRPSANPQSVGRGRGRERTLPAWMTAAEATPPGGLQQQSAPGTTSAGQVPRPTGSFSSRPQPTTQTTAHGRYSIKNTSSEDNQTARAAATGTFHVGVGRHGNLQRQGRAPGGQGSSHGMFETLREQYPGSAGVSMAGSSGARPTTHHQSLFTTVVGHRRGLKVRRWVRGETRDDGAPGGLRPYEEGASDSLPRASLPTGSYSSHPGHRTQGAVPNSGGSSRYKAGTNRKGRRAAGIGTHQPERSASTNPEIGSWHANAERIDGQSPVPAGTVGLNGAPERGLLMADPSSQHQELATTAGEECGGEQSRPKRGREEEPGMDSTGSASRARGGASGRQPSGLGGLLDVIRRTASMNLQPPAKKNKVALSKSSPPKNLVATRARFQIVHHHDAPKQQQQQLVAHRSKLPTLNTAGEARGTSKSKGSSRVPLAGAALSSRPSRSTTPKKVVIDGNDVALCHRGAHGQWSAQGALLAIQFFERRGVPCVAFLPRERMAGVSPRDGCNTAFQEARAKGAINEIPRGEKADLSILKYAIESKVHVVTNKKLSTHATSNEALAFLGQTKQDLREYLSHYHVCYTFVRNDFKPNPETPFIRMLLNQAPAGSRVTHAKGKGGGPTKP 835
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1643.4353.1 vs. uniprot
Match: D7FTX8_ECTSI (RNase NYN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTX8_ECTSI)

HSP 1 Score: 1033 bits (2671), Expect = 0.000e+0
Identity = 583/785 (74.27%), Postives = 623/785 (79.36%), Query Frame = 2 
Query:  446 MDWTPAASTPSSSSAVSYAEPSGTVRASPDDTMVSAHTGLNPAPPRDQADFPREHAAATAGTPRGGQSGQRGREGVVANQAVGPGAAVTVPSSSQRPGGGRDREKTLPAWTAAGPTALPDGSQQQISPFEANAQAQTPRRTGWYSSRPQQGAPSKPQVGPNDGDRNSRAKINDRNRNNYDEEPHRPLGAGATPDMDTLYSMTRESRTHTPAPRQPTTAVPRPSANPKSAGRGRGRERTLPAWMTAAEANPPGGLQQQAARGATGTG----PTGIFLSCPQQTTQTIAQGNNSIRNTSSEDNQMAKAAAMGTFHMGVGQHGNPQRQRRAPGGQGSRHD--ETFREQYPASAGMSMAGASEARPTT--------VAGHGRGLQVQRWVRDGTRDDVAPGGLLPYAQDASGSVPRASRPTG-HSSRPGHRTQSALPNRGGTSRYKAGTDRKGRRAAGIGTHQSERSSSTNPEIGSRHGNVGRIDGQSPAPAAAGSLNDAPENRLLVADPSSQHQGISTTAG----GGQSRAKRSREEEPTMTTA---SRARGDASGRQPAGLGGLLDVIRRTASLNLQPPAKKNKVALTKSSPPK-------------NLVATRARFQIVHHHDAPKQEPS-VARRSKLPTLTTAGEVRDTNKSKGSSRAPLAGAALSCRTSRSTTPKKVVIDGDDVALCRWGADGSWSARGPLLAIQFFEQRGVPCVAFLPRESMASVTPRDGCNTAFQEARTDGAISEIPRGEKADLFILKHAVETNAHVVTNKNLSIHASSNEAL 2692
            MDWTPAA   SSSSA +Y E +G VRASPD+ MVSA TG N APPRD ADFP EH+A  AGTP GGQSGQRGREGVVA+Q VG GAAV VPS + RP GGRDREKTLPAW AAGP ALPDG QQQ++P  ANA  QTPR TG YSSRPQQGAPSK + GP+DGDRNSRA IN+RNRNNYDEEPHR +GAGATPDM TLY+M RESR HTPAPR PTTA PRPSA           ERTLPAWMTAAEA PPGGLQQQ+A G T  G    PTG F SCPQQTTQT A G  S++NTSSEDNQ AKAAA GTFH+GVG HGNPQRQRRAPGGQG  H   ET REQYP SAG+SMAGAS ARPTT        VAGHGRGL+V+RWVR GTRDD  PGGL PY +    SVPRASRPTG +SSRPGHRTQ ALPN  G+SRYKAGT+RKGRRAAGIGT + ERS+STNPEIGS H N  RIDGQSP PA    LN APE  LLVADPSSQHQ ++TTAG    GGQSR KR REEEP M +    SRARG  SGRQPAGLGGLLDVIRRTAS+NLQPPAKKNKVAL+KSSPPK             NLVATRARFQIVHHHDAPKQ+   VA RSKLPTL TAGE R T+KSKGSSRAPLAGAALS R SRSTTPKKVVIDG+DVALC  GADG WSA+GPLLAIQFFEQRGVPCVAFLPRE MA V+PRDGCNTAFQEAR  GAISEIPRGEK DLFILK+A+E+  HVVTNK LS HA+SNE L
Sbjct:    1 MDWTPAAVGSSSSSAANYGESTGMVRASPDEMMVSASTGRNVAPPRDPADFPHEHSATAAGTPLGGQSGQRGREGVVAHQGVGSGAAVAVPSRNHRPEGGRDREKTLPAWMAAGPAALPDGRQQQVTPV-ANAPTQTPRPTGLYSSRPQQGAPSKQKAGPSDGDRNSRANINNRNRNNYDEEPHRSVGAGATPDMSTLYAMARESRNHTPAPRTPTTAAPRPSAXXXXXXXXXXXERTLPAWMTAAEATPPGGLQQQSAPGTTSGGRVPEPTGSFSSCPQQTTQTTAHGRYSVKNTSSEDNQTAKAAATGTFHVGVGHHGNPQRQRRAPGGQGISHGIFETLREQYPGSAGVSMAGASGARPTTHHQSLSSTVAGHGRGLKVRRWVRGGTRDDGTPGGLRPYEEGPFDSVPRASRPTGSYSSRPGHRTQGALPNSCGSSRYKAGTNRKGRRAAGIGTRRPERSASTNPEIGSWHTNAERIDGQSPVPAGTVDLNGAPERGLLVADPSSQHQELATTAGEERGGGQSRPKRGREEEPGMASTGSVSRARGGESGRQPAGLGGLLDVIRRTASMNLQPPAKKNKVALSKSSPPKFSASVPRTALSLQNLVATRARFQIVHHHDAPKQQQQLVAHRSKLPTLNTAGEARRTSKSKGSSRAPLAGAALSSRPSRSTTPKKVVIDGNDVALCHRGADGQWSAQGPLLAIQFFEQRGVPCVAFLPRERMAGVSPRDGCNTAFQEARAKGAISEIPRGEKGDLFILKYAIESKVHVVTNKRLSTHAASNETL 784
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1643.4353.1 vs. uniprot
Match: D7FTY5_ECTSI (RNase NYN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTY5_ECTSI)

HSP 1 Score: 384 bits (985), Expect = 1.670e-115
Identity = 347/874 (39.70%), Postives = 416/874 (47.60%), Query Frame = 2 
Query:  446 MDWTPAASTPSSSSAVSYAEPSGTVRASPDDTMVSAHTG-LNP-APPRDQADFPREHAAATAGTPRGGQSGQR--GREGVVANQAVGPGAAVTVPSSSQRPGGGRDREKTLPAWTAAGPTALPDG-----------SQQQISPFEANAQAQTPRRTGWYSSRPQQGAPSKPQVGPNDGDRNSRAKINDRNRNNY---------DEEPHRPLGAGATPDMDTLYSMTRESRTHTPAPRQPTTAVPRPSANPKSAGRGRGRERTLPAWMTAAEANPPGGLQQQAARGATGT--GPTGIFLSCPQQTTQTIAQGNNSIRNTSSEDNQMAKAAAMGTFHMGVGQHGNPQRQRRAPGGQGSRHDETFREQYPASAGMSMAGASEARPTTVAGHGRGLQVQRWVRDGTRDDVAPGGLLPYAQDASGSVPRASRPTG---HSSRPGHRTQSALPNRGGTS---------RYKAGTDRKGRRAAGIGTHQSERSSSTNPEIGSRHGNVGRIDGQSPAPAAAGSLND-APENRLLVADPSSQHQGISTT--AGGGQ--SRAKRSREEEPT---MTTASRARGDASGRQPAGL--GGLLDVIRRTASLNLQPPAKKNKVALTKSSPPKNLVATRARFQIVHHHDAPKQEPSVARRSKLPTLTTAGEVRDTNKSKGSSRAPLAGAALSCRTSRSTTPKK--------------VVIDGDDVALCRWGADGSWSARGPLLAIQFFEQRGVPCVAFLPRESMASVTPRDGCNTAFQEARTDGAISEIPRGEKADLFILKHAVETNAHVVTNKNLSIHASSNEALASLGQTKQDLREYLSHNHVCYTFVRNEFKPDPETPFIRMLLNQAPTGSRGTHAGAKGGGPTKP 2881
            MDW PA   PSSSSAV + EP+G   ASPD TMVSA T  LNP A P      P   A AT      G SGQ   G EGV  NQ   P AA T  S+  RP GGR R++T P  +  GP A                QQQ +  E +   Q    T    S  QQ APS  Q                               D + H+P G GAT      Y+         PA      A  RPS NP++A RGRGRE TLPAWMTA +A PPGGLQ QA  G      GPTG+  S PQQ  QT A G+N  +N S  +++  +     T                        H ET                     TTVA HGRG  +   V  G R + APGGL    Q AS   PRA RP     +SSRP    Q     +G  S                    +AAG  T QS   S  + +       + ++ G  PAPAA    N  AP+N  + A  +   QG S T  AGGG   SR KR+REEE T   +TT  R    A G+Q        ++D++RR AS+ +    KK K  L  S  PK L+ATRARF+I+HHH  P Q+  V    K PT   A       +S  SS  P   A L+ + S  TTPK+              VVIDG D+AL  W  D  WSA  PLLAIQFF++RGVPCVAFLPRE +  VTP+D   TAF EAR+  AISEIP+G  A LFILKHA+E NA+VVTN  LS H +S   LASLGQTK +L  YLS +HV YTF  ++F PDPE P I+M   QA +G+  T      G  T+P
Sbjct:    1 MDWAPADVAPSSSSAVGFGEPAGKGTASPDATMVSAPTNNLNPHADPGHHPPAPPAAAVATVSA-IAGPSGQAHGGWEGVAGNQEGEPDAAATARSTDPRPAGGRGRDRTPPPRSTTGPAASNSAIIAVVDLRALHQQQQRARAECDDLVQRGLPTEASPSPSQQNAPSHGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKDTDEHQPAGTGAT-----FYAPGSVPSGAWPA----VPATTRPSTNPRAA-RGRGREATLPAWMTATQATPPGGLQPQAGPGTNSRMPGPTGLPSSGPQQGAQTTAHGDNKTKNKSEPNDKKTQGRGATTLASAAWPT--------------DYHQETS--------------------TTVAVHGRGAPLGTTVPSGARTNAAPGGLQQQPQLAS---PRAPRPLPAGLNSSRPKENNQIVSFGKGSASIQNKPKKNXXXXXXXXXXXXQAAGTSTTQSAWPSPADLKRSDGSAIIQKLAG--PAPAATVKSNHRAPKNGWVAAVGAFHGQGASKTVWAGGGSGPSRPKRNREEELTTAEITTRLRDPSKAPGQQQQQQTPDEMIDMVRRMASMGVATVPKKKKSTLDASREPKALIATRARFRIIHHHALPSQQQLVL--YKPPTFNIASGRSGATRSNQSSWVPPPRAPLAIKPSTWTTPKQPXXXXXXXXXXSPLVVIDGTDIALTYWRTDDRWSALQPLLAIQFFKERGVPCVAFLPRERVYGVTPQDDFYTAFHEARSRRAISEIPQGANASLFILKHAIENNAYVVTNAQLSGHIASPATLASLGQTKNELHSYLSRSHVRYTFAGDDFTPDPEAPLIKMFAKQA-SGANQTRGNTTRGRTTEP 821
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1643.4353.1 vs. uniprot
Match: A0A6H5KJR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJR8_9PHAE)

HSP 1 Score: 256 bits (655), Expect = 4.620e-69
Identity = 252/716 (35.20%), Postives = 307/716 (42.88%), Query Frame = 2 
Query: 1094 TAVPR---PSANPKSAGRGRGRERTLPAWMTAAEANPPGGLQQQAARGATGT--GPTGIFLSCPQQTTQTIAQGNNSIRNTSSEDNQMAKAAAMGTFHMGVGQHGNPQRQRRAPGGQGSRHDETFREQYPASAGMSMAGASEARPTTVAGHGRGLQVQRWVRDGTRDDVAPGGLLPYAQDASGSVPRASRPTGHSSRPGHRTQSALPNRGGTSRYKAGTDRKGRRAAGIGTHQSERSSSTNPEIGSRHGNVGRIDGQSPAPAAAGSLNDAPENRLLVADPSSQHQGISTTA----GGGQSRAKRSREEEPT---MTTASRARGDASGRQPAGL--GGLLDVIRRTASLNLQPPAKKNKVALTKSSPPK-------------------------------------------------------------NLVATRARFQIVHHHDAPKQEPSVARRSKLPTLTTAGEVRDTNKSKGSSRAPLAGAALSCRTSRSTTPKK--------VVIDGDDVALCRWGADGSWSARGPLLAIQFFEQRGVPCVAFLPRESMASVTPRDGCN--------------------------------------------------------TAFQEARTDGAISEIPRGEKADLFILKHAVETNAHVVTNKNLSIHASSNEALASLGQTKQDLREYLSHNHVCYTFVRNEFKPDPETPFIRMLLNQA 2824
            TAVP    PS NP++A RGRGRE TLPAWMTA +  PPGGLQQQA  G      GP+G   S PQQ+ +T A G+N  +N S  +++  +     T                        H ET                     TTVAG+ RG  +   V      + APGG     Q AS  VPR       SSRP    Q A                     AG  T QS   S    E  S  GN   I G +PA A A S + A E+  + A  +   Q  STTA    G G SR KR+REEE T   +TT  R    A G+Q        ++D++RR AS+ +    KK K+ L  SS PK                                                              L+ATRARF+I+HHH  P Q+  V      PT   A       +S  SS  P A A L+ + S  TTPK         VV+DG D+AL  W  D  WSA  PLLAIQFF++ GVPCVAFLPRE + SVT +DG +                                                        TAF EAR+  AISEIP+G  A LFILK A+E NA+VVTN  LS H +S   LASLGQTK +L+ YLS +HV YTF  ++F PDPE P I+M   QA
Sbjct:  161 TAVPATTSPSTNPRAA-RGRGREATLPAWMTATQETPPGGLQQQAGPGTDSRMPGPSGSHSSGPQQSARTKAHGDNKTKNESGPNDKKTQGRGATTLASAAWPT--------------DYHQETS--------------------TTVAGNARGALLGTTVPSRACANAAPGGFQQQPQLASPRVPRPLPAGLSSSRPEENNQIA---------------------AGTSTTQSAWPSPAKLE--SSDGNA-IIAGPAPA-ATAESNHRATEHGWVAAVGAFHGQEASTTAWAGSGSGPSRPKRNREEELTTTEITTRLRNPSKAPGQQQKQQTPDEMMDMVRRMASMGIATVPKKKKLTLDASSEPKVIFNIKLNNRAVARVRVLSFTPAVVLAYPVEHHNTLWVRLPNGGNPDGCGCCAGARNKKIVALIATRARFRIIHHHALPSQQQLVL--YDPPTSNIASGRSGATRSNQSSWGPPARAPLAIKPSTWTTPKPXXXXXSPLVVLDGTDIALTYWRTDDRWSALQPLLAIQFFKEWGVPCVAFLPRERVCSVTLQDGGSPTSFEGGFLRSDLVHKDMRRPVVGVRAGSYSLLTFGMPRPNPFNPVGSSPLVTDFYTAFHEARSRRAISEIPQGANASLFILKRAIEHNAYVVTNAKLSGHIASPATLASLGQTKNELQSYLSRSHVRYTFAGDDFTPDPEAPLIKMFAKQA 814
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1643.4353.1 vs. uniprot
Match: A0A7V5I9J3_9BACT (RNase NYN domain-containing protein n=2 Tax=cellular organisms TaxID=131567 RepID=A0A7V5I9J3_9BACT)

HSP 1 Score: 72.0 bits (175), Expect = 1.070e-9
Identity = 48/151 (31.79%), Postives = 77/151 (50.99%), Query Frame = 2 
Query: 2351 TTPKKVVIDGDDVALCRWGADGSWSARGPLLAIQFFEQRGVPCVAFLP-----RESMASVTPRDGCNTAFQEARTDGAISEIPRGEKADLFILKHAVETNAHVVTNKNLSIHASSNEALASLGQTKQDLREYLSHNHVCYTFVRNEFKPDP 2788
            T    VV+DG+++A    G +  +S +G  +A+ FF +RG  CV FLP     R  + +V+  D             A+  +P GE  D F L +AV  +A +VTN  L  H   ++     G+ ++ LR++L  +   +TFV +EF P+P
Sbjct:  186 TNVSLVVLDGENIAWAH-GQNAVFSPKGIAIAVDFFRKRGYRCVVFLPDYRRKRADLPTVSASD-------------ALVFVPAGEYDDTFALGYAVGHDAILVTNDLLQDHL--DQFYPDEGEAREALRKWLGSHRCSFTFVGDEFLPNP 320
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1643.4353.1 vs. uniprot
Match: A0A7S1TE81_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TE81_9RHOD)

HSP 1 Score: 68.2 bits (165), Expect = 6.190e-8
Identity = 50/153 (32.68%), Postives = 77/153 (50.33%), Query Frame = 2 
Query: 2348 STTPKKVVIDGDDVALCRWGADGSWSARGPLLAIQFFEQRGVPCVAFLPRE-SMASVTPR-----DGCNTAFQEARTDGAISEIPRGEKADLFILKHAVETNAHVVTNKNLSIHASSNEALASLGQTKQDLREYLSHNHVCYTFVRNEFKPDP 2788
            S T +KV+IDG +VA    G   S+SARG LLA+++FEQR    VA + R  S  +  PR     D       E R  G +   P  E  DL+IL++A   +A +++N        S   L ++ + +  L + +S N + Y F+R++    P
Sbjct:  502 SATKRKVIIDGSNVAYDH-GCGNSYSARGILLALEYFEQRQHDTVAIVNRRHSQITGGPRQRPGHDADVALLDELRRQGRLCYCPVDEDEDLYILQYAARNDALILSNDWYRKEVKSQ--LTAMNRAR--LADLISRNRISYMFIRDQLFVKP 649
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1643.4353.1 vs. uniprot
Match: A0A8J4PVQ7_9MYCE (RNase NYN domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PVQ7_9MYCE)

HSP 1 Score: 66.2 bits (160), Expect = 2.900e-7
Identity = 48/175 (27.43%), Postives = 85/175 (48.57%), Query Frame = 2 
Query: 2324 ALSCRTSRSTTPKK-VVIDGDDVALCRWGADGSWSARGPLLAIQFFEQRGVPCVAFLPRESMASVTPRDGCNT--------------AFQEARTDGAISEIPRGEKADLFILKHAVETNAHVVTNKNLSIHASSNEALASLGQT-KQDLREYLSHNHVCYTFVRNEFKPDPETPF 2800
            +L  R+++  T K  +VIDG +VA  ++G    +S  G   A+ +++QRG   VAF+P    +     D                  AFQ+    G +S  P  +  D++ + +A   NA +VTN         N+ +    ++ KQ +R+++  + + +TFVR+EF P+P+  F
Sbjct:  749 SLVFRSNKKKTGKSYIVIDGPNVAK-KYGTKKKFSVMGLKKALDYYDQRGYEVVAFVPESYASRKNHHDPKKNFTLFEYQDVADDLVAFQKLTESGKVSLTPAQDYDDIYTIHYARMHNACIVTNDRY------NDIIDKCQESEKQKIRKFIRDHCISFTFVRDEFLPNPDFKF 916
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1643.4353.1 vs. uniprot
Match: A0A7J7INX5_9RHOD (RNase NYN domain-containing protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7INX5_9RHOD)

HSP 1 Score: 63.9 bits (154), Expect = 4.860e-7
Identity = 45/143 (31.47%), Postives = 70/143 (48.95%), Query Frame = 2 
Query: 2369 VIDGDDVALCRWGADGSWSARGPLLAIQFFEQRGVPCVAFLPRESMASVTPRDGCNTAFQEARTDGAISEIPRGEKADLFILKHAVETNAHVVTNKNLSIHA---SSNEALASLGQTKQDLREYLSHNHVCYTFVRNEFKPDP 2788
            V DG+++A      +  +S RG  LA+ FF++RG  CV FLP         R  C  A   A     +   P G+  D + L +A+  +A +VTN  L  H    S +E      +T++ +R++L  +   +TFV  EF P+P
Sbjct:  195 VFDGENIAWAH-ARNAHFSPRGIALAVTFFQERGYRCVVFLPNY-------RRQC-AALPFADKHDMLVFTPPGDYDDTYALSYALRYDAILVTNDRLQDHLDQFSDDEV-----RTRESMRQWLGSHRCSFTFVGEEFVPNP 323
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1643.4353.1 vs. uniprot
Match: D3B617_POLPP (RNase NYN domain-containing protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B617_POLPP)

HSP 1 Score: 64.7 bits (156), Expect = 8.700e-7
Identity = 50/160 (31.25%), Postives = 78/160 (48.75%), Query Frame = 2 
Query: 2366 VVIDGDDVALCRWGADGSWSARGPLLAIQFFEQRGVPCVAFLPRESMASVTPRDGCNTA---------------FQEARTDGAISEIPRGEKADLFILKHAVETNAHVVTNKNLSIHASSNEALASLGQTKQDLREYLSHNHVCYTFVRNEFKPDPETPF 2800
            VVIDG +VAL ++G    +S      A+ ++ QRG   VAF+P ES+AS  P  G N                 FQE      +   P  +  D + +++A + NA +VTN   + H +  E  A     +Q  R+++  + + +TFVR EF P+P+  F
Sbjct:  786 VVIDGPNVAL-KYGKKNCFSVIAIKKALDYYIQRGYEAVAFVP-ESVASRKPT-GPNAPMKLLDFQPVVDNFAMFQELVARELVCLTPPQDYDDSYAIQYAKKHNAIIVTNDRYNDHINKQETDAE----RQKARKFIREHCISFTFVRQEFLPNPDFQF 938
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1643.4353.1 vs. uniprot
Match: R7Q260_CHOCR (RNase NYN domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q260_CHOCR)

HSP 1 Score: 60.8 bits (146), Expect = 1.100e-5
Identity = 41/162 (25.31%), Postives = 71/162 (43.83%), Query Frame = 2 
Query: 2366 VVIDGDDVALCRWGADGSWSARGPLLAIQFFEQRGVPCVAFLPRESMASVTP-RDGCNTAF--------QEARTDGAISEIPRGEKADLFILKHAVETNAHVVTNKNLSIHASSNEALASLGQTKQDLREYLSHNHVCYTFVRNEFKPDPETPFIRMLLNQA 2824
            V+IDG +V       D  + +RG  LA+ ++   G+  +A LPR  +   T  R G              E  + G +   P G   D FIL++A+   A V++N          E    +    +D+R +L  + + YTF+  +F P+P    +   ++Q+
Sbjct:  474 VIIDGQNVGRDYGENDHIFQSRGVKLALDYYAANGIRALALLPRNKVDQRTYLRPGVRNTLVADDPELLNELHSQGRVYFTPAGSHDDFFILRYAMRKEADVISNDRFIKELEMQETAEDV----RDMRTFLETHLIPYTFIGQDFVPNPNPCRLGRNVHQS 631
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1643.4353.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5KK30_9PHAE0.000e+075.84RNase NYN domain-containing protein n=1 Tax=Ectoca... [more]
D7FTX8_ECTSI0.000e+074.27RNase NYN domain-containing protein n=1 Tax=Ectoca... [more]
D7FTY5_ECTSI1.670e-11539.70RNase NYN domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KJR8_9PHAE4.620e-6935.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7V5I9J3_9BACT1.070e-931.79RNase NYN domain-containing protein n=2 Tax=cellul... [more]
A0A7S1TE81_9RHOD6.190e-832.68Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A8J4PVQ7_9MYCE2.900e-727.43RNase NYN domain-containing protein n=1 Tax=Polysp... [more]
A0A7J7INX5_9RHOD4.860e-731.47RNase NYN domain-containing protein n=1 Tax=Cyanid... [more]
D3B617_POLPP8.700e-731.25RNase NYN domain-containing protein n=1 Tax=Polysp... [more]
R7Q260_CHOCR1.100e-525.31RNase NYN domain-containing protein n=1 Tax=Chondr... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1643contigE-fasciculatus_F_contig1643:18..6658 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score405.6
Seed ortholog evalue5.5e-110
Seed eggNOG ortholog2880.D7FTY5
KEGG koko:K18668
EggNOG free text desc.Zc3h12a-like Ribonuclease NYN domain
EggNOG OGs2E7Q9@1,2SE9D@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03019
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibonuclease Zc3h12a-like
Ec32 orthologEc-07_002780.1
Exons7
Model size2920
Cds size2475
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1643.4353.1prot_E-fasciculatus_F_contig1643.4353.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1643 18..6213 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928113.77384-CDS-E-fasciculatus_F_contig1643:17..1311622928113.77384-CDS-E-fasciculatus_F_contig1643:17..131Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1643 18..131 -
1695995824.2872171-CDS-E-fasciculatus_F_contig1643:17..1311695995824.2872171-CDS-E-fasciculatus_F_contig1643:17..131Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1643 18..131 -
1622928113.7898161-CDS-E-fasciculatus_F_contig1643:583..6961622928113.7898161-CDS-E-fasciculatus_F_contig1643:583..696Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1643 584..696 -
1695995824.2976549-CDS-E-fasciculatus_F_contig1643:583..6961695995824.2976549-CDS-E-fasciculatus_F_contig1643:583..696Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1643 584..696 -
1622928113.8075812-CDS-E-fasciculatus_F_contig1643:1110..11871622928113.8075812-CDS-E-fasciculatus_F_contig1643:1110..1187Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1643 1111..1187 -
1695995824.3068147-CDS-E-fasciculatus_F_contig1643:1110..11871695995824.3068147-CDS-E-fasciculatus_F_contig1643:1110..1187Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1643 1111..1187 -
1622928113.8324783-CDS-E-fasciculatus_F_contig1643:2048..21361622928113.8324783-CDS-E-fasciculatus_F_contig1643:2048..2136Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1643 2049..2136 -
1695995824.324799-CDS-E-fasciculatus_F_contig1643:2048..21361695995824.324799-CDS-E-fasciculatus_F_contig1643:2048..2136Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1643 2049..2136 -
1622928113.8549938-CDS-E-fasciculatus_F_contig1643:3256..33321622928113.8549938-CDS-E-fasciculatus_F_contig1643:3256..3332Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1643 3257..3332 -
1695995824.3368776-CDS-E-fasciculatus_F_contig1643:3256..33321695995824.3368776-CDS-E-fasciculatus_F_contig1643:3256..3332Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1643 3257..3332 -
1622928113.8702753-CDS-E-fasciculatus_F_contig1643:3677..39741622928113.8702753-CDS-E-fasciculatus_F_contig1643:3677..3974Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1643 3678..3974 -
1695995824.3511198-CDS-E-fasciculatus_F_contig1643:3677..39741695995824.3511198-CDS-E-fasciculatus_F_contig1643:3677..3974Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1643 3678..3974 -
1622928113.885646-CDS-E-fasciculatus_F_contig1643:4503..62131622928113.885646-CDS-E-fasciculatus_F_contig1643:4503..6213Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1643 4504..6213 -
1695995824.3642635-CDS-E-fasciculatus_F_contig1643:4503..62131695995824.3642635-CDS-E-fasciculatus_F_contig1643:4503..6213Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1643 4504..6213 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928113.91272-UTR-E-fasciculatus_F_contig1643:6213..66581622928113.91272-UTR-E-fasciculatus_F_contig1643:6213..6658Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1643 6214..6658 -
1695995824.373113-UTR-E-fasciculatus_F_contig1643:6213..66581695995824.373113-UTR-E-fasciculatus_F_contig1643:6213..6658Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1643 6214..6658 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1643.4353.1

>prot_E-fasciculatus_F_contig1643.4353.1 ID=prot_E-fasciculatus_F_contig1643.4353.1|Name=mRNA_E-fasciculatus_F_contig1643.4353.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=825bp
MDWTPAASTPSSSSAVSYAEPSGTVRASPDDTMVSAHTGLNPAPPRDQAD
FPREHAAATAGTPRGGQSGQRGREGVVANQAVGPGAAVTVPSSSQRPGGG
RDREKTLPAWTAAGPTALPDGSQQQISPFEANAQAQTPRRTGWYSSRPQQ
GAPSKPQVGPNDGDRNSRAKINDRNRNNYDEEPHRPLGAGATPDMDTLYS
MTRESRTHTPAPRQPTTAVPRPSANPKSAGRGRGRERTLPAWMTAAEANP
PGGLQQQAARGATGTGPTGIFLSCPQQTTQTIAQGNNSIRNTSSEDNQMA
KAAAMGTFHMGVGQHGNPQRQRRAPGGQGSRHDETFREQYPASAGMSMAG
ASEARPTTVAGHGRGLQVQRWVRDGTRDDVAPGGLLPYAQDASGSVPRAS
RPTGHSSRPGHRTQSALPNRGGTSRYKAGTDRKGRRAAGIGTHQSERSSS
TNPEIGSRHGNVGRIDGQSPAPAAAGSLNDAPENRLLVADPSSQHQGIST
TAGGGQSRAKRSREEEPTMTTASRARGDASGRQPAGLGGLLDVIRRTASL
NLQPPAKKNKVALTKSSPPKNLVATRARFQIVHHHDAPKQEPSVARRSKL
PTLTTAGEVRDTNKSKGSSRAPLAGAALSCRTSRSTTPKKVVIDGDDVAL
CRWGADGSWSARGPLLAIQFFEQRGVPCVAFLPRESMASVTPRDGCNTAF
QEARTDGAISEIPRGEKADLFILKHAVETNAHVVTNKNLSIHASSNEALA
SLGQTKQDLREYLSHNHVCYTFVRNEFKPDPETPFIRMLLNQAPTGSRGT
HAGAKGGGPTKPPAPRPPPPRPPV*
back to top

mRNA from alignment at E-fasciculatus_F_contig1643:18..6658-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1643.4353.1 ID=mRNA_E-fasciculatus_F_contig1643.4353.1|Name=mRNA_E-fasciculatus_F_contig1643.4353.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=6641bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1643:18..6658- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTTCTCCCTGTCGTCCCAATTGCGTCCTCCACCGCCACCGCCCACTTGGG
GGAGCGGGCATCCCTTCTCCCACTTATCACGGAAGCGTTGCAAGGTTTTT
ATTCTTCGGGGCGTGGGAGATAAGAAGCCAGCACCACACGAAGATTTGCT
GCGCTAGACAAGGCAGCACAGGGCGGGCGTGCATGTTTTTCGGGTGCCCA
GCTCGGCGGACTCCAGCTCTCTCCCTCGGCGAGGCAGGCCTAGCCTGAAA
GCGCACACCGCCGGAGCGTTGAACCTTGGTGGCAGTCTCTGGCGCAGGCT
CCCCCCCACTGCTAACGCACAGCTCGGAAGCCCAGTACTCGCCCCCAGCC
TGAACGAACGAGAAGTACAGCGGCAAGCAGTAGAGCGGCCCGATCGCGTT
CTGCAAGGTTAGATCTGGGAGCCGTCAAGAGCGGCAGGCCAAGGTATGGA
CTGGACTCCGGCTGCCTCCACTCCTTCGAGCTCTTCCGCTGTCAGCTACG
CGGAGCCTTCGGGAACGGTAAGAGCTTCCCCAGATGACACGATGGTGTCC
GCCCACACCGGCCTGAACCCAGCTCCTCCTCGAGACCAGGCAGATTTTCC
GCGCGAACATGCTGCAGCCACAGCCGGCACGCCGCGTGGAGGACAATCGG
GGCAGCGGGGGCGGGAGGGTGTAGTGGCGAACCAGGCGGTTGGACCCGGT
GCAGCCGTAACGGTCCCGTCGAGCAGTCAACGACCCGGAGGAGGGCGTGA
CCGAGAGAAGACACTCCCGGCGTGGACGGCCGCGGGCCCGACGGCTTTGC
CTGACGGGAGCCAACAGCAAATATCACCGTTTGAAGCAAATGCTCAAGCG
CAGACGCCTCGACGAACCGGATGGTACTCATCTCGTCCACAGCAGGGTGC
TCCGAGCAAGCCGCAAGTGGGTCCAAATGATGGGGACAGGAATTCCCGAG
CGAAAATAAATGATCGAAACCGAAACAACTATGATGAGGAGCCGCATCGA
CCTTTAGGTGCTGGCGCAACCCCAGACATGGACACCCTGTATTCGATGAC
TCGAGAATCACGCACACACACACCGGCACCCAGACAACCAACCACAGCGG
TCCCGAGACCGTCGGCAAATCCAAAGTCAGCAGGAAGAGGGCGCGGCCGA
GAGAGGACGCTGCCAGCGTGGATGACTGCGGCCGAGGCAAACCCGCCGGG
CGGACTTCAACAGCAAGCGGCGCGTGGAGCCACGGGTACCGGACCTACGG
GGATATTCTTATCTTGTCCACAGCAGACTACCCAAACCATCGCCCAAGGC
AACAACAGCATTAGGAATACATCGAGTGAAGACAATCAAATGGCGAAAGC
GGCAGCAATGGGCACCTTCCACATGGGGGTTGGTCAACACGGGAATCCGC
AGCGGCAAAGGCGAGCACCGGGAGGTCAAGGGAGTCGCCATGACGAGACA
TTTCGTGAACAGTACCCGGCATCCGCGGGAATGAGTATGGCCGGGGCGTC
GGAGGCAAGGCCCACAACGGTGGCAGGGCACGGTCGAGGACTCCAGGTTC
AGAGGTGGGTGCGTGATGGGACACGTGATGACGTTGCACCTGGTGGACTT
CTACCGTATGCTCAGGATGCGAGCGGTTCTGTGCCTCGGGCGTCTCGACC
GACTGGACACTCGTCTCGCCCAGGACATAGGACTCAGAGCGCCCTCCCAA
ACCGCGGCGGTACTAGTAGGTATAAAGCAGGCACGGACAGAAAGGGACGC
CGTGCTGCCGGAATCGGCACTCACCAATCGGAAAGGTCGTCATCCACCAA
CCCAGAGATTGGCAGTCGGCATGGGAACGTTGGGAGAATTGATGGGCAGA
GCCCAGCACCAGCAGCCGCGGGTAGCTTGAACGACGCACCCGAGAACAGA
TTGCTGGTGGCAGATCCCTCTTCCCAGCATCAGGGGATTTCTACGACGGC
AGGCGGTGGGCAATCGAGGGCGAAGAGAAGTCGCGAAGAGGAGCCAACGA
TGACCACCGCGTCCCGTGCTCGGGGCGACGCGTCAGGGCGGCAACCAGCA
GGACTTGGCGGGCTGCTGGACGTGATACGCAGGACGGCTAGCTTGAACCT
ACAGCCCCCCGCGAAGAAGAACAAAGTGGCTCTAACCAAGAGCAGTCCGC
CGAAGGTGAGTCTATGCAGTTTCAAGAGACGAGTTCTAAACTTTTTTTGT
GTCAGAGCGCGTTTTTCGGGCGCATGTTGCGGGGGGTATCTACCTTGCGA
AGCAGCTGTAGTCGTGTTTCGTGGGTCGAGTGGACGTTCGGCAACAGCAC
CCACTCGGTCGAAGCCTATGTCAGACCAGGACACCGGCACTACCTTGCGC
ACTTGCACTATAATGAAAAAACCAGGTCTTGAATGCTTGAACGCTCTCGG
GGTTACGCTGGCAGTCCGCGTATCTGGCTGCAGGGTATGATATGTTGAGT
CTGCTGCATGCACCGCATGCCTGTCATCCTTCAAGGGTGCATTGTGCGTT
CAACGCTTGACGGAATGTGAGGAAATATCATTCGAAGTCTTGTTGTTCTC
AACTTCGACCAAGCCATGCTTCGTGCGAGGTTCGAACGTCTACCCTTAAC
TTCGTTGTGAACAACTGTAGGTTTGCGGCCTTACCTCCAACCAGTTCTCT
GCATCTGTGCCCCGCACGGCAATGCCTGTCGCAGAATCTGGTCGCCACCA
GGGCCCGGTTCCAGATCGTTCATCACCACGACGCCCCGAAGCAAGAGCCG
TCAGTAGCCCGTAGGAGTAAGTTGCCGACCTTGACCACCGCCGGCGAAGT
GCGCGATACGAACAAGAGCAAAGGGTCATCACGGGCCCCACTGGCAGGCG
CCGCTCTCTCGTGCAGGACTTCACGTTCCACGACCCCGAAGAAGGTGGTC
ATTGATGGAGATGACGTCGCGCTTTGCCGCTGGGGAGCAGATGGTTCATG
GTCTGCTCGCGGGCCCTTGCTGGCCATCCAGGTGGGTGCTTCGCCAACGT
GTGGGCTTGTCGCACTATTTAGTCCCGCCCTGTCGTAAAGTCCTCTTGTG
TTGCTGCACTGGCCGTGCCATTGGGTTATCTTTTAGACGCACTTGGAACG
GGGTGAAGTGCATGATCTGTTGGTTGCCTTGCCTCCAAGAACACACGTCT
TTTGCAGTTTTCTATCAAAGGTTCCACCGCCGTGGGGTTACAGGTTGCCC
TTCTTTTCGGGGAAATTTTTCCCAGGTTGCCACTCTCAACGCAAGCATGA
TTGAATTGTGGGGCTTTGAGACACTGCACGATTAACCTCGACACACGCAT
GCACCCCTCGCTCTTGTTCTTTCCAGTTTTTCGAGCAACGCGGCGTACCG
TGCGTGGCCTTCCTTCCTCGCGAAAGCATGGCTAGCGTCACCCCTCGAGA
CGGTGAGATGGATCGCGGGTTTGTTGTCGTCGCCGTACGCGGCTGTGGAC
GATCGGTGGTGAGAAGCCGTCGACCTACACCAGGAGCGGTGCTCATATTG
CACGGTGCACGTTGTGTTTTGCGGTGTCGAACGAGCAGCCATGGCAGCGT
ACGCATGTTCTTCCCTCCGATAAGCTCGTGTTGGCGTAGTTTGCGGTATA
GAGCGAGCAGTCATGGCAGCGTACACGTGTTCCGCCCTCCAACACTCGCG
TTTGTGTGTTTTGCGGTATAGAAAAGCAGTCATACCAGTGTACACGTGTT
CCACCCTCCAGTACCCGCTAAACCGATGAAGAGCGTTTCTTTCTTTAAAC
CTCATCCTCTCGCTAGTGTTCCGCATTGGGTCGCGAACCGCGCATAGTTT
TCTGTTGCGGTGGCTCGCAGCAAAATCTTAATTGCCTGTTGCGTACAGTG
TAGGCCCCTTGTTTGTATCTGTGTGCCGCGGTTTACTGAAGACGTTTTGT
GGCGGGGGAATCGTGAAGTTCGATGTGATTCCCATCTACGATCCCACGGT
GGGACAGCGACAGCGGCAGTTGTGTGAAGCATGTTCGATTGTTTGGTTCT
TGAGTCTCATGTGGTCGTGCACACCGTTCTCGCAGGTTGCATTACGAACT
CCCTCACTACCGTTGTTGACTGTGCCCCTCTGCTGTCGTTCTACCCCTAG
CCGATAACTCGACCTATCACACCGTTCGACAAGCTCGAAGTGTGGGTTCG
CGCACGTATTACAGAGCGGAAACGAGTGGACGATTTCACGCGCCGTTCGC
CAAACCTCACAGCTTAAGGCAGATTCAGCACGCTCATCTTTTTGGCCGCG
GCACTTCTTCGTCTTGCTTCTACAAAATTTTGTGGTCGACCATTTTGTTT
GTCGAAGCCCCCATGTTGCCATACGCCTTTCGGGACCGCTGCCGACAAAA
CCCGAGGTTTGTGACCCTGGTCCAGTCAATACCGCCGGGCCTCAACCCCC
CCCCCACGCACTGCGCTTGTCTCGTTTCGACAACAGCACTAGCCTTTGCG
TGGACGAAACTCGTGTTGACACGGTTGAATGCCCTACGTGCTGCTATCCT
CAACTCTACTTGCGCGTGGCAGGCTGCAACACTGCGTTTCAGGAGGCGAG
GACCGACGGAGCGATCTCCGAAATCCCTCGGGGGGAGAAGGCCGACCTTT
TCATCCTCAAGTGAGTTTTTACGAGTTAGGCCCCGAGATCGCCTGTACGA
CTGCTTGAGTGGCCAAACAAAAACTAATCTTTCTGGCATCGAGGGCTGCT
TTTCCATGTAATTTTGTCGATGACGCACATGGCAACCTGGTTCCCAGGTT
CGTTGCCGTAGTTGTCGCTGATCGACAGGTATGCGCGTGTGTTGAACCCG
GCTTGAAATTTCGCCTCTGGAAGAATGCAGGTTGGGGTGACTCTGAGTTC
GTTTCAAGCAACGTTTGTGCAATTGCAAAACGGCACTCGCCCGACAACAA
CTACGTTTCAATAATTCGAAGAGGACGACCCACAGCCGCAGCGGCAGGGT
TATGGCCCCTGTCGCCTTGAGGGACTGCGGCCACCGCTGCTGCGAACCGA
AAGAGATGTTGGCATCTGTACAACACCAAATCACAAGCTGGGGCTCCGCC
AGAGCTGACACCGCTATCTGCCCAAACGAGACCTCTTTTGACAACACCTT
CTTTTTCAACACGTCATCAAAGAGGCGACCAACCTCACACGATGGTACGT
GAAATCGATGCACATGGTTCGGGACGGCGGGAAAATTGTACTGACCAAAC
GTTGAAACAGCTCAACAGCTTGCTTGTTGGACAGATGCACACAGCCATTT
TTTTCATCGATTGTTCTTGCTGGTTTCTTTCAGTAATATTGTCGGCGGGC
GAGCGCTTGAAACCTTGTTCAACCGGTTGTTGTCCACTGACTAAACCATT
ATGTGGAGATATTCCTCGATTAGTATCTGCCTGGTCGACAACTACGTCCT
GTACCTATGCGGCTTGTAAAAACGTTTGTCGATAACCCTTTGACGCTCTC
GGCTGCTCCACCCTGCATCAGGCACGCCGTCGAAACGAATGCCCACGTGG
TCACCAACAAGAATCTTAGCATCCACGCCTCCAGCAACGAGGCACTAGGT
GGGAAACGGCATGCCCTCGTGCGCGAAGTAGCTACAAGAGCGACGCTTCT
CATAGGTGTCGACACAGTGACGACGTTGCTTATTCACGCACAGCATCTGG
TAGTGTGATGGCGCATCCGGAAGAATCGCGTCCAAACGTATTGGCTTCGT
CGAGACCACCGGCAACATCACGAAACGTACCATTTTGTGTTGTTGAAGCA
TTTTGGAACGCGTACGCACTCAATGCTGAACTCGCGGCATTCATGATTGT
TTGGACGGCAGTTCTGCGTAAGTGCGCTACATGCGTGATCGACGCACGCC
GTATACGTTTGTGCTGAACTTGCGAGTCACCCACCGCCTTCACCATCACG
TGCACGCTGGTACTTCGTACCAAACGTTGTGCTCTTTCCTTTCCCCGCAA
ATCCTTCCGCAGCTTCTCTAGGGCAGACCAAGCAAGATCTACGGGAGTAT
CTTTCCCACAACCATGTGTGCTACACGTTTGTCCGAAACGAGTTCAAGCC
CGACCCGGAAACGCCTTTCATCAGGGTAAGTCTGTGCCCCCCCCCCCCCC
CCCCCCCCCCCCCNNNNNNNNNNGGCCGGGGTCGTGCGTTGGCATTAACA
GCGCGGCTTGGTTTTCCTTTTTCCTACCCATGTGGTGGAAATGGCCCGAT
GCCTGAAAAGGGATATTCGAGGCTGTTCCATTGATGAGCCGTCTGTATCT
TGTCAAAAACTGGTGCAGGTTGTACTTGGCAGAGGGGGCTTCGTTGCCCA
GGTTTCTTGCGGCAAGATATAGTGTTGTCTGTCTGGCGGGAATCAAGTGT
TGTGAACCTGCTCCGGCAGCCCTGTTCTCGGATGCACGTGTAGATGACCC
ACCAATGTGAGACCAACCCACATGGGGGCAAGCTTTGTTCTTGTCCTCGC
GCGTCATCAGCATCGTCTGCCGTTTCGTCCTAACCGCACTCCCCACCGTC
CTATCCTATTATCACACCCATTAACAGATGCTCCTAAATCAGGCCCCAAC
TGGAAGCCGAGGGACCCACGCTGGGGCGAAAGGGGGAGGACCGACAAAGC
CTCCCGCCCCCCGCCCCCCGCCCCCCCGCCCCCCGGTGTGA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1643:18..6658-

>mRNA_E-fasciculatus_F_contig1643.4353.1 ID=mRNA_E-fasciculatus_F_contig1643.4353.1|Name=mRNA_E-fasciculatus_F_contig1643.4353.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=4950bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1643:18..6658- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGACTGGACTCCGGCTGCCTCCACTCCTTCGAGCTCTTCCGCTGTCAG
CTACGCGGAGCCTTCGGGAACGGTAAGAGCTTCCCCAGATGACACGATGG
TGTCCGCCCACACCGGCCTGAACCCAGCTCCTCCTCGAGACCAGGCAGAT
TTTCCGCGCGAACATGCTGCAGCCACAGCCGGCACGCCGCGTGGAGGACA
ATCGGGGCAGCGGGGGCGGGAGGGTGTAGTGGCGAACCAGGCGGTTGGAC
CCGGTGCAGCCGTAACGGTCCCGTCGAGCAGTCAACGACCCGGAGGAGGG
CGTGACCGAGAGAAGACACTCCCGGCGTGGACGGCCGCGGGCCCGACGGC
TTTGCCTGACGGGAGCCAACAGCAAATATCACCGTTTGAAGCAAATGCTC
AAGCGCAGACGCCTCGACGAACCGGATGGTACTCATCTCGTCCACAGCAG
GGTGCTCCGAGCAAGCCGCAAGTGGGTCCAAATGATGGGGACAGGAATTC
CCGAGCGAAAATAAATGATCGAAACCGAAACAACTATGATGAGGAGCCGC
ATCGACCTTTAGGTGCTGGCGCAACCCCAGACATGGACACCCTGTATTCG
ATGACTCGAGAATCACGCACACACACACCGGCACCCAGACAACCAACCAC
AGCGGTCCCGAGACCGTCGGCAAATCCAAAGTCAGCAGGAAGAGGGCGCG
GCCGAGAGAGGACGCTGCCAGCGTGGATGACTGCGGCCGAGGCAAACCCG
CCGGGCGGACTTCAACAGCAAGCGGCGCGTGGAGCCACGGGTACCGGACC
TACGGGGATATTCTTATCTTGTCCACAGCAGACTACCCAAACCATCGCCC
AAGGCAACAACAGCATTAGGAATACATCGAGTGAAGACAATCAAATGGCG
AAAGCGGCAGCAATGGGCACCTTCCACATGGGGGTTGGTCAACACGGGAA
TCCGCAGCGGCAAAGGCGAGCACCGGGAGGTCAAGGGAGTCGCCATGACG
AGACATTTCGTGAACAGTACCCGGCATCCGCGGGAATGAGTATGGCCGGG
GCGTCGGAGGCAAGGCCCACAACGGTGGCAGGGCACGGTCGAGGACTCCA
GGTTCAGAGGTGGGTGCGTGATGGGACACGTGATGACGTTGCACCTGGTG
GACTTCTACCGTATGCTCAGGATGCGAGCGGTTCTGTGCCTCGGGCGTCT
CGACCGACTGGACACTCGTCTCGCCCAGGACATAGGACTCAGAGCGCCCT
CCCAAACCGCGGCGGTACTAGTAGGTATAAAGCAGGCACGGACAGAAAGG
GACGCCGTGCTGCCGGAATCGGCACTCACCAATCGGAAAGGTCGTCATCC
ACCAACCCAGAGATTGGCAGTCGGCATGGGAACGTTGGGAGAATTGATGG
GCAGAGCCCAGCACCAGCAGCCGCGGGTAGCTTGAACGACGCACCCGAGA
ACAGATTGCTGGTGGCAGATCCCTCTTCCCAGCATCAGGGGATTTCTACG
ACGGCAGGCGGTGGGCAATCGAGGGCGAAGAGAAGTCGCGAAGAGGAGCC
AACGATGACCACCGCGTCCCGTGCTCGGGGCGACGCGTCAGGGCGGCAAC
CAGCAGGACTTGGCGGGCTGCTGGACGTGATACGCAGGACGGCTAGCTTG
AACCTACAGCCCCCCGCGAAGAAGAACAAAGTGGCTCTAACCAAGAGCAG
TCCGCCGAAGATGGACTGGACTCCGGCTGCCTCCACTCCTTCGAGCTCTT
CCGCTGTCAGCTACGCGGAGCCTTCGGGAACGGTAAGAGCTTCCCCAGAT
GACACGATGGTGTCCGCCCACACCGGCCTGAACCCAGCTCCTCCTCGAGA
CCAGGCAGATTTTCCGCGCGAACATGCTGCAGCCACAGCCGGCACGCCGC
GTGGAGGACAATCGGGGCAGCGGGGGCGGGAGGGTGTAGTGGCGAACCAG
GCGGTTGGACCCGGTGCAGCCGTAACGGTCCCGTCGAGCAGTCAACGACC
CGGAGGAGGGCGTGACCGAGAGAAGACACTCCCGGCGTGGACGGCCGCGG
GCCCGACGGCTTTGCCTGACGGGAGCCAACAGCAAATATCACCGTTTGAA
GCAAATGCTCAAGCGCAGACGCCTCGACGAACCGGATGGTACTCATCTCG
TCCACAGCAGGGTGCTCCGAGCAAGCCGCAAGTGGGTCCAAATGATGGGG
ACAGGAATTCCCGAGCGAAAATAAATGATCGAAACCGAAACAACTATGAT
GAGGAGCCGCATCGACCTTTAGGTGCTGGCGCAACCCCAGACATGGACAC
CCTGTATTCGATGACTCGAGAATCACGCACACACACACCGGCACCCAGAC
AACCAACCACAGCGGTCCCGAGACCGTCGGCAAATCCAAAGTCAGCAGGA
AGAGGGCGCGGCCGAGAGAGGACGCTGCCAGCGTGGATGACTGCGGCCGA
GGCAAACCCGCCGGGCGGACTTCAACAGCAAGCGGCGCGTGGAGCCACGG
GTACCGGACCTACGGGGATATTCTTATCTTGTCCACAGCAGACTACCCAA
ACCATCGCCCAAGGCAACAACAGCATTAGGAATACATCGAGTGAAGACAA
TCAAATGGCGAAAGCGGCAGCAATGGGCACCTTCCACATGGGGGTTGGTC
AACACGGGAATCCGCAGCGGCAAAGGCGAGCACCGGGAGGTCAAGGGAGT
CGCCATGACGAGACATTTCGTGAACAGTACCCGGCATCCGCGGGAATGAG
TATGGCCGGGGCGTCGGAGGCAAGGCCCACAACGGTGGCAGGGCACGGTC
GAGGACTCCAGGTTCAGAGGTGGGTGCGTGATGGGACACGTGATGACGTT
GCACCTGGTGGACTTCTACCGTATGCTCAGGATGCGAGCGGTTCTGTGCC
TCGGGCGTCTCGACCGACTGGACACTCGTCTCGCCCAGGACATAGGACTC
AGAGCGCCCTCCCAAACCGCGGCGGTACTAGTAGGTATAAAGCAGGCACG
GACAGAAAGGGACGCCGTGCTGCCGGAATCGGCACTCACCAATCGGAAAG
GTCGTCATCCACCAACCCAGAGATTGGCAGTCGGCATGGGAACGTTGGGA
GAATTGATGGGCAGAGCCCAGCACCAGCAGCCGCGGGTAGCTTGAACGAC
GCACCCGAGAACAGATTGCTGGTGGCAGATCCCTCTTCCCAGCATCAGGG
GATTTCTACGACGGCAGGCGGTGGGCAATCGAGGGCGAAGAGAAGTCGCG
AAGAGGAGCCAACGATGACCACCGCGTCCCGTGCTCGGGGCGACGCGTCA
GGGCGGCAACCAGCAGGACTTGGCGGGCTGCTGGACGTGATACGCAGGAC
GGCTAGCTTGAACCTACAGCCCCCCGCGAAGAAGAACAAAGTGGCTCTAA
CCAAGAGCAGTCCGCCGAAGAATCTGGTCGCCACCAGGGCCCGGTTCCAG
ATCGTTCATCACCACGACGCCCCGAAGCAAGAGCCGTCAGTAGCCCGTAG
GAGTAAGTTGCCGACCTTGACCACCGCCGGCGAAGTGCGCGATACGAACA
AGAGCAAAGGGTCATCACGGGCCCCACTGGCAGGCGCCGCTCTCTCGTGC
AGGACTTCACGTTCCACGACCCCGAAGAAGGTGGTCATTGATGGAGATGA
CGTCGCGCTTTGCCGCTGGGGAGCAGATGGTTCATGGTCTGCTCGCGGGC
CCTTGCTGGCCATCCAGAATCTGGTCGCCACCAGGGCCCGGTTCCAGATC
GTTCATCACCACGACGCCCCGAAGCAAGAGCCGTCAGTAGCCCGTAGGAG
TAAGTTGCCGACCTTGACCACCGCCGGCGAAGTGCGCGATACGAACAAGA
GCAAAGGGTCATCACGGGCCCCACTGGCAGGCGCCGCTCTCTCGTGCAGG
ACTTCACGTTCCACGACCCCGAAGAAGGTGGTCATTGATGGAGATGACGT
CGCGCTTTGCCGCTGGGGAGCAGATGGTTCATGGTCTGCTCGCGGGCCCT
TGCTGGCCATCCAGTTTTTCGAGCAACGCGGCGTACCGTGCGTGGCCTTC
CTTCCTCGCGAAAGCATGGCTAGCGTCACCCCTCGAGACGTTTTTCGAGC
AACGCGGCGTACCGTGCGTGGCCTTCCTTCCTCGCGAAAGCATGGCTAGC
GTCACCCCTCGAGACGGCTGCAACACTGCGTTTCAGGAGGCGAGGACCGA
CGGAGCGATCTCCGAAATCCCTCGGGGGGAGAAGGCCGACCTTTTCATCC
TCAAGCTGCAACACTGCGTTTCAGGAGGCGAGGACCGACGGAGCGATCTC
CGAAATCCCTCGGGGGGAGAAGGCCGACCTTTTCATCCTCAAGCACGCCG
TCGAAACGAATGCCCACGTGGTCACCAACAAGAATCTTAGCATCCACGCC
TCCAGCAACGAGGCACTAGGCACGCCGTCGAAACGAATGCCCACGTGGTC
ACCAACAAGAATCTTAGCATCCACGCCTCCAGCAACGAGGCACTAGCTTC
TCTAGGGCAGACCAAGCAAGATCTACGGGAGTATCTTTCCCACAACCATG
TGTGCTACACGTTTGTCCGAAACGAGTTCAAGCCCGACCCGGAAACGCCT
TTCATCAGGCTTCTCTAGGGCAGACCAAGCAAGATCTACGGGAGTATCTT
TCCCACAACCATGTGTGCTACACGTTTGTCCGAAACGAGTTCAAGCCCGA
CCCGGAAACGCCTTTCATCAGGATGCTCCTAAATCAGGCCCCAACTGGAA
GCCGAGGGACCCACGCTGGGGCGAAAGGGGGAGGACCGACAAAGCCTCCC
GCCCCCCGCCCCCCGCCCCCCCGCCCCCCGGTGTGAATGCTCCTAAATCA
GGCCCCAACTGGAAGCCGAGGGACCCACGCTGGGGCGAAAGGGGGAGGAC
CGACAAAGCCTCCCGCCCCCCGCCCCCCGCCCCCCCGCCCCCCGGTGTGA
back to top