mRNA_E-fasciculatus_F_contig16429.4352.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16429.4352.1
Unique NamemRNA_E-fasciculatus_F_contig16429.4352.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16429.4352.1 vs. uniprot
Match: A0A6H5K7N4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7N4_9PHAE)

HSP 1 Score: 219 bits (558), Expect = 8.500e-65
Identity = 107/111 (96.40%), Postives = 109/111 (98.20%), Query Frame = 1 
Query:    1 EPVQAAVKKWCDDSSVDLVLTSGGTGFGRRDLTPEAIRPLLHREAPGVVHAIYQGGLKFTPLAVLSRPVAGTRNNTLVVTLPGSVKAVKENLGSLVPLLPRIVNLLKGNAC 333
            E +QAAVKKWCDDSS+DLVLTSGGTGFGRRDLTPEAIRPLLHREAPGVVHAIYQGGLKFTPLAVLSRPVAGTRNNTLVVTLPGSVKAVKENLGSLVPLLPRIVNLLKGN C
Sbjct:  751 EEIQAAVKKWCDDSSIDLVLTSGGTGFGRRDLTPEAIRPLLHREAPGVVHAIYQGGLKFTPLAVLSRPVAGTRNNTLVVTLPGSVKAVKENLGSLVPLLPRIVNLLKGNPC 861
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BLAST of mRNA_E-fasciculatus_F_contig16429.4352.1 vs. uniprot
Match: D8LBK7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK7_ECTSI)

HSP 1 Score: 214 bits (545), Expect = 7.160e-64
Identity = 104/108 (96.30%), Postives = 107/108 (99.07%), Query Frame = 1 
Query:   10 QAAVKKWCDDSSVDLVLTSGGTGFGRRDLTPEAIRPLLHREAPGVVHAIYQGGLKFTPLAVLSRPVAGTRNNTLVVTLPGSVKAVKENLGSLVPLLPRIVNLLKGNAC 333
            +AAVKKWCDDSS+DLVLTSGGTGFGRRDLTPEAIRPLLHREAPGVVHAIYQGGLKFTPLAVLSRPVAGTRNNTLVVTLPGSVKAVKENLGS+VPLLPRIVNLLKGN C
Sbjct:  581 KAAVKKWCDDSSIDLVLTSGGTGFGRRDLTPEAIRPLLHREAPGVVHAIYQGGLKFTPLAVLSRPVAGTRNNTLVVTLPGSVKAVKENLGSMVPLLPRIVNLLKGNPC 688
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BLAST of mRNA_E-fasciculatus_F_contig16429.4352.1 vs. uniprot
Match: A0A835YS15_9STRA (MoeA N-terminal region-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS15_9STRA)

HSP 1 Score: 184 bits (466), Expect = 7.990e-53
Identity = 88/111 (79.28%), Postives = 97/111 (87.39%), Query Frame = 1 
Query:    1 EPVQAAVKKWCDDSSVDLVLTSGGTGFGRRDLTPEAIRPLLHREAPGVVHAIYQGGLKFTPLAVLSRPVAGTRNNTLVVTLPGSVKAVKENLGSLVPLLPRIVNLLKGNAC 333
            E +QA + +WCD + VDL+LTSGGTGFGRRDLTPEAI PLL R APG+VHAIYQ GLK TPLAVLSRPVAGTR NTLVVTLPGSVKAV EN+ +LVPLLPRIVNLL+GN C
Sbjct:  512 EDIQACIMEWCDVAKVDLILTSGGTGFGRRDLTPEAIAPLLQRHAPGIVHAIYQAGLKHTPLAVLSRPVAGTRGNTLVVTLPGSVKAVNENMTALVPLLPRIVNLLQGNEC 622
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BLAST of mRNA_E-fasciculatus_F_contig16429.4352.1 vs. uniprot
Match: A0A7S3XZE9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZE9_HETAK)

HSP 1 Score: 148 bits (374), Expect = 9.830e-44
Identity = 70/109 (64.22%), Postives = 84/109 (77.06%), Query Frame = 1 
Query:    7 VQAAVKKWCDDSSVDLVLTSGGTGFGRRDLTPEAIRPLLHREAPGVVHAIYQGGLKFTPLAVLSRPVAGTRNNTLVVTLPGSVKAVKENLGSLVPLLPRIVNLLKGNAC 333
            +Q  VK+W D   VDL++TSGGTGFG RD TPEA+ PLLHREAPG+V A+ + G + TPLAVLSRPVAGTR  TLV T+PGS KAVKEN+  ++PL+PRI NLL    C
Sbjct:   42 IQERVKRWADAEGVDLIVTSGGTGFGPRDTTPEAVAPLLHREAPGLVFALMKKGTEHTPLAVLSRPVAGTRGRTLVFTVPGSSKAVKENMEVMIPLIPRICNLLSDRQC 150
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BLAST of mRNA_E-fasciculatus_F_contig16429.4352.1 vs. uniprot
Match: A0A7S2V159_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V159_9STRA)

HSP 1 Score: 158 bits (399), Expect = 7.670e-43
Identity = 76/105 (72.38%), Postives = 87/105 (82.86%), Query Frame = 1 
Query:   19 VKKWCDDSSVDLVLTSGGTGFGRRDLTPEAIRPLLHREAPGVVHAIYQGGLKFTPLAVLSRPVAGTRNNTLVVTLPGSVKAVKENLGSLVPLLPRIVNLLKGNAC 333
            V +W D   VDLV+T+GGTGFG RD TPEA+RP+LHREAPG+V A+ Q G K TPLAVLSRPVAGTR  +L+VTLPGS KAVKENL +L+PLLPRIVNLL  NAC
Sbjct:  627 VMRWTDQGKVDLVITTGGTGFGLRDRTPEALRPILHREAPGLVFALLQEGTKNTPLAVLSRPVAGTREKSLIVTLPGSTKAVKENLVALIPLLPRIVNLLNDNAC 731
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BLAST of mRNA_E-fasciculatus_F_contig16429.4352.1 vs. uniprot
Match: A0A812RY17_SYMMI (Gphn protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812RY17_SYMMI)

HSP 1 Score: 143 bits (361), Expect = 3.830e-42
Identity = 71/111 (63.96%), Postives = 84/111 (75.68%), Query Frame = 1 
Query:    7 VQAAVKKWCDDSS--VDLVLTSGGTGFGRRDLTPEAIRPLLHREAPGVVHAIYQGGLKFTPLAVLSRPVAGTRNNTLVVTLPGSVKAVKENLGSLVPLLPRIVNLLKGNAC 333
            + + + +W D S   + LVLTSGGTGFG RD+TPEAIRPL HREAP V  A+   GLK TPLAVLSRPV GTRN TL+ TLPGSVKAV+EN+ +L PLLPRI+NL+    C
Sbjct:    2 IVSQICEWTDQSGHPLHLVLTSGGTGFGPRDITPEAIRPLFHREAPAVAQALINEGLKHTPLAVLSRPVVGTRNETLICTLPGSVKAVRENIQALKPLLPRIMNLISTGKC 112
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BLAST of mRNA_E-fasciculatus_F_contig16429.4352.1 vs. uniprot
Match: A0A397E448_9STRA (MoCF_biosynth domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397E448_9STRA)

HSP 1 Score: 133 bits (335), Expect = 7.810e-38
Identity = 60/107 (56.07%), Postives = 81/107 (75.70%), Query Frame = 1 
Query:    1 EPVQAAVKKWCDDSSVDLVLTSGGTGFGRRDLTPEAIRPLLHREAPGVVHAIYQGGLKFTPLAVLSRPVAGTRNNTLVVTLPGSVKAVKENLGSLVPLLPRIVNLLK 321
            + +Q  V+ WCDD  VD V+TSGGTGF  RD+TPEA++ LLHR+APG+VH + Q  L+ TP+A+L+RPVAG R +TLVVTLPG   AV E L ++ P+LP  ++LL+
Sbjct:   28 DEIQHVVRSWCDDLHVDFVVTSGGTGFSPRDVTPEAVKTLLHRDAPGLVHKMLQASLEVTPMAILARPVAGIRGHTLVVTLPGKPNAVVETLNAIAPVLPHALHLLQ 134
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BLAST of mRNA_E-fasciculatus_F_contig16429.4352.1 vs. uniprot
Match: I2CRJ2_NANGC (Gephyrin (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRJ2_NANGC)

HSP 1 Score: 134 bits (336), Expect = 4.420e-37
Identity = 64/109 (58.72%), Postives = 78/109 (71.56%), Query Frame = 1 
Query:    7 VQAAVKKWCDDSSVDLVLTSGGTGFGRRDLTPEAIRPLLHREAPGVVHAIYQGGLKFTPLAVLSRPVAGTRNNTLVVTLPGSVKAVKENLGSLVPLLPRIVNLLKGNAC 333
            +Q  +  W D+  VD + TSGGT F  RDLTPEA+RPL+ +EAPG+V  I + G K TP AVLSRPVAG R  T +VTLPGS KAVKENL +L+PLLP++  LLK   C
Sbjct:  109 IQQKICIWADELKVDAIFTSGGTSFAPRDLTPEAVRPLIDKEAPGMVWRIMEVGTKHTPFAVLSRPVAGVRGGTFIVTLPGSPKAVKENLDTLLPLLPKVFGLLKTATC 217
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BLAST of mRNA_E-fasciculatus_F_contig16429.4352.1 vs. uniprot
Match: A0A7C5VT14_9CHLR (MogA/MoaB family molybdenum cofactor biosynthesis protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C5VT14_9CHLR)

HSP 1 Score: 130 bits (327), Expect = 2.050e-36
Identity = 64/110 (58.18%), Postives = 83/110 (75.45%), Query Frame = 1 
Query:    1 EPVQAAVKKWCDDSSVDLVLTSGGTGFGRRDLTPEAIRPLLHREAPGVVHAIYQGGLKFTPLAVLSRPVAGTRNNTLVVTLPGSVKAVKENLGSLVPLLPRIVNLLKGNA 330
            E ++A +++W DD  VDL++T+GGTGFG RD+TPEA R +L REAPG++ AI   GLK TPLA+LSR VAG R  TL+V LPGS K V+E L  LVP+LP ++ LL+G A
Sbjct:   49 EVIEARLRQWADDVGVDLIVTTGGTGFGPRDVTPEATRAVLDREAPGLMVAITVEGLKNTPLAMLSRGVAGARGKTLIVNLPGSPKGVREALQVLVPVLPHLLELLRGEA 158
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BLAST of mRNA_E-fasciculatus_F_contig16429.4352.1 vs. uniprot
Match: A0A4D9D018_9STRA (Molybdopterin adenylyltransferase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D018_9STRA)

HSP 1 Score: 134 bits (336), Expect = 3.020e-36
Identity = 64/109 (58.72%), Postives = 78/109 (71.56%), Query Frame = 1 
Query:    7 VQAAVKKWCDDSSVDLVLTSGGTGFGRRDLTPEAIRPLLHREAPGVVHAIYQGGLKFTPLAVLSRPVAGTRNNTLVVTLPGSVKAVKENLGSLVPLLPRIVNLLKGNAC 333
            +Q  +  W D+  VD + TSGGT F  RDLTPEA+RPL+ +EAPG+V  I + G K TP AVLSRPVAG R  T +VTLPGS KAVKENL +L+PLLP++  LLK   C
Sbjct:  186 IQQKICIWADELKVDAIFTSGGTSFAPRDLTPEAVRPLIDKEAPGMVWRIMEVGTKHTPFAVLSRPVAGVRGGTFIVTLPGSPKAVKENLDTLLPLLPKVFGLLKTATC 294
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16429.4352.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K7N4_9PHAE8.500e-6596.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBK7_ECTSI7.160e-6496.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YS15_9STRA7.990e-5379.28MoeA N-terminal region-domain-containing protein n... [more]
A0A7S3XZE9_HETAK9.830e-4464.22Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2V159_9STRA7.670e-4372.38Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A812RY17_SYMMI3.830e-4263.96Gphn protein (Fragment) n=1 Tax=Symbiodinium micro... [more]
A0A397E448_9STRA7.810e-3856.07MoCF_biosynth domain-containing protein n=4 Tax=Ap... [more]
I2CRJ2_NANGC4.420e-3758.72Gephyrin (Fragment) n=1 Tax=Nannochloropsis gadita... [more]
A0A7C5VT14_9CHLR2.050e-3658.18MogA/MoaB family molybdenum cofactor biosynthesis ... [more]
A0A4D9D018_9STRA3.020e-3658.72Molybdopterin adenylyltransferase n=1 Tax=Nannochl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16429contigE-fasciculatus_F_contig16429:588..1146 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score213.0
Seed ortholog evalue7.2e-53
Seed eggNOG ortholog2880.D8LBK7
Preferred nameCNX1E
KEGG rclassRC00002,RC03462
KEGG koko:K03750,ko:K13168,ko:K15376
KEGG ReactionR09726,R09735
KEGG Pathwayko00790,ko01100,ko04727,map00790,map01100,map04727
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006464,GO:0006725,GO:0006732,GO:0006753,GO:0006777,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008940,GO:0009058,GO:0009108,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009144,GO:0009150,GO:0009199,GO:0009205,GO:0009259,GO:0009719,GO:0009725,GO:0009733,GO:0009734,GO:0009755,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0016491,GO:0016661,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0018315,GO:0019538,GO:0019637,GO:0019693,GO:0019720,GO:0023052,GO:0030151,GO:0032324,GO:0032870,GO:0034641,GO:0036211,GO:0042040,GO:0042221,GO:0042278,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046039,GO:0046128,GO:0046483,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0051186,GO:0051188,GO:0051189,GO:0051716,GO:0055086,GO:0055114,GO:0061598,GO:0061599,GO:0065007,GO:0070566,GO:0070887,GO:0071310,GO:0071365,GO:0071495,GO:0071704,GO:0072521,GO:0090407,GO:1901068,GO:1901135,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657
EggNOG free text desc.molybdopterin molybdotransferase activity
EggNOG OGsCOG0303@1,KOG2371@2759
EC2.10.1.1,2.7.7.75
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03041
Hectar predicted targeting categoryother localisation
Exons2
Model size336
Cds size336
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928113.7058861-CDS-E-fasciculatus_F_contig16429:587..7151622928113.7058861-CDS-E-fasciculatus_F_contig16429:587..715Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16429 588..715 +
1695995824.2614825-CDS-E-fasciculatus_F_contig16429:587..7151695995824.2614825-CDS-E-fasciculatus_F_contig16429:587..715Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16429 588..715 +
1622928113.7252226-CDS-E-fasciculatus_F_contig16429:938..11461622928113.7252226-CDS-E-fasciculatus_F_contig16429:938..1146Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16429 939..1146 +
1695995824.275537-CDS-E-fasciculatus_F_contig16429:938..11461695995824.275537-CDS-E-fasciculatus_F_contig16429:938..1146Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16429 939..1146 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16429.4352.1prot_E-fasciculatus_F_contig16429.4352.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16429 588..1146 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16429.4352.1

>prot_E-fasciculatus_F_contig16429.4352.1 ID=prot_E-fasciculatus_F_contig16429.4352.1|Name=mRNA_E-fasciculatus_F_contig16429.4352.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=112bp
EPVQAAVKKWCDDSSVDLVLTSGGTGFGRRDLTPEAIRPLLHREAPGVVH
AIYQGGLKFTPLAVLSRPVAGTRNNTLVVTLPGSVKAVKENLGSLVPLLP
RIVNLLKGNAC*
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mRNA from alignment at E-fasciculatus_F_contig16429:588..1146+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16429.4352.1 ID=mRNA_E-fasciculatus_F_contig16429.4352.1|Name=mRNA_E-fasciculatus_F_contig16429.4352.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=559bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16429:588..1146+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAACCGGTGCAGGCGGCGGTGAAGAAGTGGTGCGACGACTCATCGGTAGA
CCTGGTCCTGACTTCGGGGGGCACTGGGTTCGGGCGCCGAGACCTCACTC
CGGAAGCCATCCGCCCCCTGCTTCACAGGTCAGCAATGTGTGACGTGGTG
ACGGCCTTAACCGTGACGTGGTGATGTTTTTCGTGCGAGAGCTGCTGCCG
TTATCCGCTGTGGTGGGAGTCCACTTGCCACCAACAACGCCCGACGAAAG
CATGACCCCCGATAACCGGCCTCCTTCGTCCCTTTCCGCATTTGTTCTCT
TCCTTTCCCGCTACTGCTGTACTGCTCCCCCGTGTGCCTGCCCCGCCGCA
GGGAAGCGCCCGGCGTCGTGCACGCGATCTACCAGGGCGGTCTCAAGTTC
ACCCCGCTGGCGGTGCTGTCCCGGCCGGTGGCGGGCACCCGGAACAACAC
CCTCGTGGTGACCCTGCCGGGCAGCGTGAAGGCGGTGAAGGAAAACCTGG
GGTCGTTGGTGCCGCTGCTGCCGCGCATCGTGAACCTTCTCAAGGGGAAC
GCCTGCTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16429:588..1146+

>mRNA_E-fasciculatus_F_contig16429.4352.1 ID=mRNA_E-fasciculatus_F_contig16429.4352.1|Name=mRNA_E-fasciculatus_F_contig16429.4352.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=672bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16429:588..1146+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAACCGGTGCAGGCGGCGGTGAAGAAGTGGTGCGACGACTCATCGGTAGA
CCTGGTCCTGACTTCGGGGGGCACTGGGTTCGGGCGCCGAGACCTCACTC
CGGAAGCCATCCGCCCCCTGCTTCACAGGAACCGGTGCAGGCGGCGGTGA
AGAAGTGGTGCGACGACTCATCGGTAGACCTGGTCCTGACTTCGGGGGGC
ACTGGGTTCGGGCGCCGAGACCTCACTCCGGAAGCCATCCGCCCCCTGCT
TCACAGGGAAGCGCCCGGCGTCGTGCACGCGATCTACCAGGGCGGTCTCA
AGTTCACCCCGCTGGCGGTGCTGTCCCGGCCGGTGGCGGGCACCCGGAAC
AACACCCTCGTGGTGACCCTGCCGGGCAGCGTGAAGGCGGTGAAGGAAAA
CCTGGGGTCGTTGGTGCCGCTGCTGCCGCGCATCGTGAACCTTCTCAAGG
GGAACGCCTGCTGAGGAAGCGCCCGGCGTCGTGCACGCGATCTACCAGGG
CGGTCTCAAGTTCACCCCGCTGGCGGTGCTGTCCCGGCCGGTGGCGGGCA
CCCGGAACAACACCCTCGTGGTGACCCTGCCGGGCAGCGTGAAGGCGGTG
AAGGAAAACCTGGGGTCGTTGGTGCCGCTGCTGCCGCGCATCGTGAACCT
TCTCAAGGGGAACGCCTGCTGA
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