mRNA_E-fasciculatus_F_contig16426.4350.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16426.4350.1
Unique NamemRNA_E-fasciculatus_F_contig16426.4350.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16426.4350.1 vs. uniprot
Match: A0A6H5KWG5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWG5_9PHAE)

HSP 1 Score: 248 bits (634), Expect = 5.000e-76
Identity = 133/150 (88.67%), Postives = 138/150 (92.00%), Query Frame = 1 
Query:    1 YVVEKLLRYLRWSNLIRRHFLMTPEDLQGSTARDGGLSSTPKDNLTDLSSNRIRENGCHTRSTGNVLDAGATPGGKNGSLANGNGHGSGGTNGDRKRGTPAAVRQTHGYTYSDRGKAAALETIAAQESAKKVATWLSGLSAGGVAVVEAR 450
            YVVEKLLRYLRWSNLIRRHFLMTP+DL GSTARD   SS P+DNLT+LSS+R RENGCHTRSTGNVLD GATPGGKNGSL NGNGHGSGG NGDRKRGTPA VRQTHGYTYSDRGKAAALETIAAQES KKVA WL+GLSAGGVAVVEAR
Sbjct:  110 YVVEKLLRYLRWSNLIRRHFLMTPDDL-GSTARDVASSSAPRDNLTELSSSRNRENGCHTRSTGNVLDTGATPGGKNGSLTNGNGHGSGGKNGDRKRGTPA-VRQTHGYTYSDRGKAAALETIAAQESVKKVAAWLNGLSAGGVAVVEAR 257
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16426.4350.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KWG5_9PHAE5.000e-7688.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16426contigE-fasciculatus_F_contig16426:402..1415 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score207.2
Seed ortholog evalue5.3e-51
Seed eggNOG ortholog2880.D8LFR1
EggNOG free text desc.6phosphofructo2kinase
EggNOG OGsCOG0406@1,KOG0234@2759
Ec32 ortholog descriptionHistidine phosphatase superfamily, clade-1
Ec32 orthologEc-01_001230.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size453
Cds size453
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928113.5351682-CDS-E-fasciculatus_F_contig16426:401..5111622928113.5351682-CDS-E-fasciculatus_F_contig16426:401..511Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16426 402..511 -
1695995824.1842506-CDS-E-fasciculatus_F_contig16426:401..5111695995824.1842506-CDS-E-fasciculatus_F_contig16426:401..511Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16426 402..511 -
1622928113.5502186-CDS-E-fasciculatus_F_contig16426:1072..14151622928113.5502186-CDS-E-fasciculatus_F_contig16426:1072..1415Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16426 1073..1415 -
1695995824.1996682-CDS-E-fasciculatus_F_contig16426:1072..14151695995824.1996682-CDS-E-fasciculatus_F_contig16426:1072..1415Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16426 1073..1415 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16426.4350.1prot_E-fasciculatus_F_contig16426.4350.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16426 402..1415 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16426.4350.1

>prot_E-fasciculatus_F_contig16426.4350.1 ID=prot_E-fasciculatus_F_contig16426.4350.1|Name=mRNA_E-fasciculatus_F_contig16426.4350.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=151bp
YVVEKLLRYLRWSNLIRRHFLMTPEDLQGSTARDGGLSSTPKDNLTDLSS
NRIRENGCHTRSTGNVLDAGATPGGKNGSLANGNGHGSGGTNGDRKRGTP
AAVRQTHGYTYSDRGKAAALETIAAQESAKKVATWLSGLSAGGVAVVEAR
*
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mRNA from alignment at E-fasciculatus_F_contig16426:402..1415-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16426.4350.1 ID=mRNA_E-fasciculatus_F_contig16426.4350.1|Name=mRNA_E-fasciculatus_F_contig16426.4350.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1014bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16426:402..1415- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TACGTCGTCGAGAAACTGCTGCGGTACCTGCGATGGTCCAACTTGATAAG
GCGACACTTTCTGATGACGCCCGAGGACCTACAAGGGTCGACGGCGAGGG
ACGGGGGCCTTAGTTCCACGCCTAAGGACAACCTGACCGATCTCTCCAGC
AACCGCATTAGAGAAAATGGTTGCCACACTCGCTCGACGGGGAACGTTCT
GGACGCCGGTGCTACGCCCGGGGGGAAGAACGGATCGCTGGCCAATGGGA
ATGGGCACGGGAGCGGCGGAACAAACGGGGACAGAAAGCGCGGTACCCCG
GCTGCCGTGCGGCAGACCCACGGCTACACATACAGCGATAGAGGTGCGTT
GGACGTCCGACGGCGGACGTATGCATAGCCGACGAGCGCGTTGTGTCGAA
TCGCGTTCTCGTAAAGCCGTGGTGTAGGTGTGTGTAAGGTGTCAGTCAGG
CAGAAGCGTTGCAAGGTAGAAGCAGGGTCGTGGATCGCTTCGCGATGGCA
AGGGTAGTGCTCCGAGTGCTGTGGCACATGGTTCGGACGCTTCCTTCCTC
TTCGCGTCGTTGTTCAGGTTACACGGTCGCGTCGCGTATCCGCGCACTGC
TGTGTTTCAGTAGTGTTTGTTGCCCCGCACTTGCGTGCCGCCATTGTGAT
TGTGACTACTGCTAACCCCCTCCCCCCGGAACGCCAATAAAAAAGCTGGA
GGAATAAAAAGACGTTGGAAGTAGTAGCAGCATGGAAAATGAACGTTTTT
GTTCGCCCTTCCTCCTTGTTGACCAAGATGCGAAATCGATGGTCCAAGAG
TCAAGCGTCAAGGGGCATGTCCCCCCGTCACCCCACCCCCATCAGACTGA
GGTTTTGATCTACCCCTCTCCCTTGCACACGCACACACACGCTGCCTTCG
CCAGGGAAGGCCGCAGCGTTGGAGACGATCGCGGCCCAAGAGTCCGCCAA
GAAAGTGGCAACGTGGCTGAGCGGGCTGAGCGCTGGAGGGGTGGCAGTCG
TAGAAGCACGGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16426:402..1415-

>mRNA_E-fasciculatus_F_contig16426.4350.1 ID=mRNA_E-fasciculatus_F_contig16426.4350.1|Name=mRNA_E-fasciculatus_F_contig16426.4350.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=906bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16426:402..1415- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TACGTCGTCGAGAAACTGCTGCGGTACCTGCGATGGTCCAACTTGATAAG
GCGACACTTTCTGATGACGCCCGAGGACCTACAAGGGTCGACGGCGAGGG
ACGGGGGCCTTAGTTCCACGCCTAAGGACAACCTGACCGATCTCTCCAGC
AACCGCATTAGAGAAAATGGTTGCCACACTCGCTCGACGGGGAACGTTCT
GGACGCCGGTGCTACGCCCGGGGGGAAGAACGGATCGCTGGCCAATGGGA
ATGGGCACGGGAGCGGCGGAACAAACGGGGACAGAAAGCGCGGTACCCCG
GCTGCCGTGCGGCAGACCCACGGCTACACATACAGCGATAGAGTACGTCG
TCGAGAAACTGCTGCGGTACCTGCGATGGTCCAACTTGATAAGGCGACAC
TTTCTGATGACGCCCGAGGACCTACAAGGGTCGACGGCGAGGGACGGGGG
CCTTAGTTCCACGCCTAAGGACAACCTGACCGATCTCTCCAGCAACCGCA
TTAGAGAAAATGGTTGCCACACTCGCTCGACGGGGAACGTTCTGGACGCC
GGTGCTACGCCCGGGGGGAAGAACGGATCGCTGGCCAATGGGAATGGGCA
CGGGAGCGGCGGAACAAACGGGGACAGAAAGCGCGGTACCCCGGCTGCCG
TGCGGCAGACCCACGGCTACACATACAGCGATAGAGGGAAGGCCGCAGCG
TTGGAGACGATCGCGGCCCAAGAGTCCGCCAAGAAAGTGGCAACGTGGCT
GAGCGGGCTGAGCGCTGGAGGGGTGGCAGTCGTAGAAGCACGGTGAGGAA
GGCCGCAGCGTTGGAGACGATCGCGGCCCAAGAGTCCGCCAAGAAAGTGG
CAACGTGGCTGAGCGGGCTGAGCGCTGGAGGGGTGGCAGTCGTAGAAGCA
CGGTGA
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