mRNA_E-fasciculatus_F_contig16424.4349.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16424.4349.1
Unique NamemRNA_E-fasciculatus_F_contig16424.4349.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig16424.4349.1 vs. uniprot
Match: A0A6H5K260_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K260_9PHAE)

HSP 1 Score: 295 bits (756), Expect = 1.310e-90
Identity = 263/319 (82.45%), Postives = 271/319 (84.95%), Query Frame = 1
Query:  280 MSLLFDEDYDSHSFYDFEKAEDWFKEADAVVFVGTSFAVTLTSLAIREAKRRSIPVFDFNVSVSLKSSPALDAKTVLGRAEATLPALASAAGVSIATKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDR-------VAAPAPARGEDGGEVVDGRTSPAATTSGDDSESPLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNRGAKRAKCVLNPANSGGVAEVAVVGEPVMQMARPPPAAGDDGVAWGGGAEYLLEPALETPLRRDQVRVDVAEAYSRKPHPDPEVREGV 1215
            MSLLFDEDYDSHSFY+FEKAEDWFKEADAVVFVGTSFAVTLTSLAIREAKRR IPVFDFNVSVSLKSSPALDAKTVLGRAEATLPALASAAGVSIATK   XXXXXXXXXXXXXX  XXXXXXXXXXXXXXXX S+R       VAAP PARGEDGG VVDGR SPA             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  RGAKRAKCVL+ A+   +A+   VGEPV  MARP  AAGD  +AWGGGAEYLLEPALETPLRRDQVRVDVAEAYSRKPHPDPEV   +
Sbjct:    1 MSLLFDEDYDSHSFYEFEKAEDWFKEADAVVFVGTSFAVTLTSLAIREAKRRGIPVFDFNVSVSLKSSPALDAKTVLGRAEATLPALASAAGVSIATKPTAXXXXXXXXXXXXXXESXXXXXXXXXXXXXXXXISERECPEVGPVAAPGPARGEDGGGVVDGRRSPAVXXXX------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGAKRAKCVLHSASGAVIADADAVGEPVTPMARPS-AAGDGDMAWGGGAEYLLEPALETPLRRDQVRVDVAEAYSRKPHPDPEVEANI 312          
BLAST of mRNA_E-fasciculatus_F_contig16424.4349.1 vs. uniprot
Match: D8LHN5_ECTSI (Deacetylase sirtuin-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHN5_ECTSI)

HSP 1 Score: 219 bits (557), Expect = 5.830e-66
Identity = 121/126 (96.03%), Postives = 121/126 (96.03%), Query Frame = 1
Query:   28 KNGQGQEGADNDRXXXXXXXXXXXXXXCCPYSFDKEIRPEDFTESVRATLTLDDDDAHAAAARGLGRSLTEMPRCPGCGEASSPMSLLFDEDYDSHSFYDFEKAEDWFKEADAVVFVGTSFAVTLT 405
            K GQGQEGADNDR  XXXXXXXXXXX CCPYSFDKEIRPEDFTESVRATLTLDDDDAH AAARGLGRSLTEMPRCPGCGEASSPMSLLFDEDYDSHSFYDFEKAEDWFKEADAVVFVGTSFAVTLT
Sbjct:  103 KEGQGQEGADNDREEXXXXXXXXXXX-CCPYSFDKEIRPEDFTESVRATLTLDDDDAHTAAARGLGRSLTEMPRCPGCGEASSPMSLLFDEDYDSHSFYDFEKAEDWFKEADAVVFVGTSFAVTLT 227          
BLAST of mRNA_E-fasciculatus_F_contig16424.4349.1 vs. uniprot
Match: A0A7S2CWY6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CWY6_9STRA)

HSP 1 Score: 119 bits (298), Expect = 3.060e-27
Identity = 62/143 (43.36%), Postives = 85/143 (59.44%), Query Frame = 1
Query:  112 CPYSFDKEIRPEDFTESVRATLTLDDDDAHAAAARGLGRSLTEMPRCPGCGEASSPMSLLFDEDYDSHSFYDFEKAEDWFKEADAVVFVGTSFAVTLTSLAIREAKRRSIPVFDFNVSVSLKSSPALDAKTVLGRAEATLPAL 540
            CPYS    I P  F+ +++  L       H      L + L ++P CP C     P +LLFDEDY  H FY F++ ++W +EA+ VVFVGTSFAVTLT+LA+ EA+ R +P+F+FN+    +S P LD   + G AE  LP L
Sbjct:   93 CPYSEHDSIGPGSFSTALQKQL------GHNVGKNKLPK-LRQVPLCPSCSNPCMPQALLFDEDYTDHEFYQFDRLQEWLEEAEVVVFVGTSFAVTLTTLAMDEARDRHLPIFNFNIDGEDRSKPTLDWSNIEGPAEVRLPEL 228          
BLAST of mRNA_E-fasciculatus_F_contig16424.4349.1 vs. uniprot
Match: A0A1Z5JZ96_FISSO (Deacetylase sirtuin-type domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JZ96_FISSO)

HSP 1 Score: 115 bits (288), Expect = 7.340e-25
Identity = 61/146 (41.78%), Postives = 90/146 (61.64%), Query Frame = 1
Query:  112 CPYSFDKEIRPEDFT--ESVRATLTLDDDDAHAAAARGLGRSLTEMPRCPGCGEASSPMSLLFDEDYDSHSFYDFEKAEDWFKEADAVVFVGTSFAVTLTSLAIREAKRRSIPVFDFNVSVSLKSSPALDAKTVLGRAEATLPALA 543
            CPY + + +  +     ES RA L   + +  + A  G  + L+  PRCP C   + P +LLFDE Y SHSFYDFE AEDW ++ + +VF GTSFAV LT++A+  A+ + IPV++FN+  +L ++  L+   ++G A  TLP LA
Sbjct:  258 CPYQYLESLGADQLILPESERAHLAPKNPNLSSDAPCGSLKQLSVSPRCPVCCNIAMPQALLFDEGYHSHSFYDFELAEDWLRDCEVMVFCGTSFAVNLTTVALDHARAKEIPVYNFNLHDTLVATARLNVSNIMGPAHETLPKLA 403          
BLAST of mRNA_E-fasciculatus_F_contig16424.4349.1 vs. uniprot
Match: A0A7S2NYC1_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NYC1_9STRA)

HSP 1 Score: 111 bits (278), Expect = 4.640e-24
Identity = 68/160 (42.50%), Postives = 91/160 (56.88%), Query Frame = 1
Query:  112 CPYSFDKEIRPEDFT-ESVRATL----------------TLDDDDAHAAAARGLGRSLTEMPRCPGCGEASSPMSLLFDEDYDSHSFYDFEKAEDWFKEADAVVFVGTSFAVTLTSLAIREAKRRSIPVFDFNVSVSLKSSPALDAKTVLGRAEATLPAL 540
            C Y   K I+P +   E VR  L                + DD DA  + +R    SL E P CPGC     P +LLFDE Y SHS Y FE AE+W   A A+VFVGTSFAVT+T +A+  A+++ +PV++FN+S  L+ +  L A+ VLG A+ TL +L
Sbjct:  154 CVYEAMKNIQPSELNPEDVRRVLDPVVAHVGHHPDAPPASSDDADADDSNSR---ISLKEPPLCPGCSRPCMPQALLFDEGYHSHSHYKFETAEEWIANASALVFVGTSFAVTITDVALEFARKKGVPVYNFNLSDRLEPTSRLHAENVLGPADDTLTSL 310          
BLAST of mRNA_E-fasciculatus_F_contig16424.4349.1 vs. uniprot
Match: A0A7S0CDM1_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CDM1_9STRA)

HSP 1 Score: 103 bits (258), Expect = 4.630e-23
Identity = 50/107 (46.73%), Postives = 68/107 (63.55%), Query Frame = 1
Query:  220 LGRSLTEMPRCPGCGEASSPMSLLFDEDYDSHSFYDFEKAEDWFKEADAVVFVGTSFAVTLTSLAIREAKRRSIPVFDFNVSVSLKSSPALDAKTVLGRAEATLPAL 540
            + + L   P CP C     P SLLFDE Y SH  Y FEK E W + AD +VFVGTSFAVT+T +A+  A+  +IPVF+ N++  L SS  L+ + ++G++E  LP L
Sbjct:   23 IQKPLKAPPLCPNCKRPCPPQSLLFDEGYHSHEHYQFEKMESWIENADVMVFVGTSFAVTITDVALEYARNENIPVFNLNLNERLNSSSRLNVENLIGKSEQILPKL 129          
BLAST of mRNA_E-fasciculatus_F_contig16424.4349.1 vs. uniprot
Match: A0A7S1UY41_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UY41_9STRA)

HSP 1 Score: 106 bits (264), Expect = 3.330e-22
Identity = 54/105 (51.43%), Postives = 70/105 (66.67%), Query Frame = 1
Query:  226 RSLTEMPRCPGCGEASSPMSLLFDEDYDSHSFYDFEKAEDWFKEADAVVFVGTSFAVTLTSLAIREAKRRSIPVFDFNVSVSLKSSPALDAKTVLGRAEATLPAL 540
            R +T  P CP C   + P++LLFDE Y SHS Y F   E+W  +AD VVFVGTSFAV LT++A+   K +++ V++FN   +L  SP LD + VLG AE TLPAL
Sbjct:  204 RQVTAPPLCPICRTPALPLALLFDEGYHSHSHYAFRDMEEWLSKADVVVFVGTSFAVWLTNVALEHCKAQNLRVYNFNTQDTLPPSPNLDVENVLGPAEETLPAL 308          
BLAST of mRNA_E-fasciculatus_F_contig16424.4349.1 vs. uniprot
Match: A0A7S2QVC2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QVC2_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 3.970e-20
Identity = 47/86 (54.65%), Postives = 64/86 (74.42%), Query Frame = 1
Query:  277 PMSLLFDEDYDSHSFYDFEKAEDWFKEADAVVFVGTSFAVTLTSLAIREAKRRSIPVFDFNV-SVSLKSSPALDAKTVLGRAEATL 531
            P +L+FDE Y SH FY+F+K   WF  AD  VFVGTSFAVT+T +AI+EA++R IPVF+FN+ S  L+ S  L+ + V+G++E TL
Sbjct:   44 PQALMFDESYSSHEFYEFDKFASWFTSADVFVFVGTSFAVTVTDMAIKEARKRKIPVFNFNLESGRLEPSNTLNVENVIGKSEETL 129          
BLAST of mRNA_E-fasciculatus_F_contig16424.4349.1 vs. uniprot
Match: A0A7S1GMY1_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GMY1_CYCTE)

HSP 1 Score: 94.0 bits (232), Expect = 2.220e-19
Identity = 46/106 (43.40%), Postives = 67/106 (63.21%), Query Frame = 1
Query:  226 RSLTEMPRCPGCGEASSPMSLLFDEDYDSHSFYDFEKAEDWFKEADAVVFVGTSFAVTLTSLAIREAKRRSIPVFDFNVSVSLKSSPALDAKTVLGRAEATLPALA 543
            R L + P CP C     P +LLFDE Y SH FY FE+ E+   +   +VFVGTSFAV++T +A+  A+   IPV++FN+   L+++  L+ + V+G +  TLP LA
Sbjct:   33 RKLEKPPLCPHCLRPCPPQALLFDEGYHSHDFYQFERMEECLSKCAVMVFVGTSFAVSITDVALEHAREHEIPVYNFNICDLLEATARLNVENVVGPSNQTLPRLA 138          
BLAST of mRNA_E-fasciculatus_F_contig16424.4349.1 vs. uniprot
Match: D8LHN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHN6_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 2.860e-19
Identity = 49/54 (90.74%), Postives = 50/54 (92.59%), Query Frame = 1
Query: 1042 MARPPPAAGDDGVAWGGGAEYLLEPALETPLRRDQVRVDVAEAYSRKPHPDPEV 1203
            MARPP AAGD  +AWGGGAEYLLEPALETPLRRDQVRVDVAEAYSRKPHPDPE 
Sbjct:    1 MARPP-AAGDGDMAWGGGAEYLLEPALETPLRRDQVRVDVAEAYSRKPHPDPEA 53          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16424.4349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K260_9PHAE1.310e-9082.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHN5_ECTSI5.830e-6696.03Deacetylase sirtuin-type domain-containing protein... [more]
A0A7S2CWY6_9STRA3.060e-2743.36Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A1Z5JZ96_FISSO7.340e-2541.78Deacetylase sirtuin-type domain-containing protein... [more]
A0A7S2NYC1_9STRA4.640e-2442.50Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A7S0CDM1_9STRA4.630e-2346.73Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S1UY41_9STRA3.330e-2251.43Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S2QVC2_9STRA3.970e-2054.65Hypothetical protein (Fragment) n=1 Tax=Triparma p... [more]
A0A7S1GMY1_CYCTE2.220e-1943.40Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
D8LHN6_ECTSI2.860e-1990.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16424contigE-fasciculatus_F_contig16424:119..2375 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score220.7
Seed ortholog evalue1.3e-54
Seed eggNOG ortholog2880.D8LHN5
EggNOG OGs2E788@1,2SDVA@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSirtuin histone deacetylase
Ec32 orthologEc-26_003780.1
Exons3
Model size1230
Cds size1230
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16424.4349.1prot_E-fasciculatus_F_contig16424.4349.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16424 119..2375 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928113.4456413-CDS-E-fasciculatus_F_contig16424:118..3661622928113.4456413-CDS-E-fasciculatus_F_contig16424:118..366Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16424 119..366 +
1695995824.1472604-CDS-E-fasciculatus_F_contig16424:118..3661695995824.1472604-CDS-E-fasciculatus_F_contig16424:118..366Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16424 119..366 +
1622928113.4718008-CDS-E-fasciculatus_F_contig16424:1041..11991622928113.4718008-CDS-E-fasciculatus_F_contig16424:1041..1199Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16424 1042..1199 +
1695995824.156982-CDS-E-fasciculatus_F_contig16424:1041..11991695995824.156982-CDS-E-fasciculatus_F_contig16424:1041..1199Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16424 1042..1199 +
1622928113.4892244-CDS-E-fasciculatus_F_contig16424:1551..23751622928113.4892244-CDS-E-fasciculatus_F_contig16424:1551..2375Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16424 1552..2375 +
1695995824.1658857-CDS-E-fasciculatus_F_contig16424:1551..23751695995824.1658857-CDS-E-fasciculatus_F_contig16424:1551..2375Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16424 1552..2375 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16424.4349.1

>prot_E-fasciculatus_F_contig16424.4349.1 ID=prot_E-fasciculatus_F_contig16424.4349.1|Name=mRNA_E-fasciculatus_F_contig16424.4349.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=410bp
MTLFFPQDKKNGQGQEGADNDREEGEGDDKDDDDDDCCPYSFDKEIRPED
FTESVRATLTLDDDDAHAAAARGLGRSLTEMPRCPGCGEASSPMSLLFDE
DYDSHSFYDFEKAEDWFKEADAVVFVGTSFAVTLTSLAIREAKRRSIPVF
DFNVSVSLKSSPALDAKTVLGRAEATLPALASAAGVSIATKAAATPTAAA
AAAAAAAAAAAMAESAMGNSGGSNDGSSDRVAAPAPARGEDGGEVVDGRT
SPAATTSGDDSESPLGRRRRHVREEGSSGGGSGGGGGGGGGGSSGGDSSS
NGDVPRAEEEEDEDEQNRGAKRAKCVLNPANSGGVAEVAVVGEPVMQMAR
PPPAAGDDGVAWGGGAEYLLEPALETPLRRDQVRVDVAEAYSRKPHPDPE
VREGVSERS*
back to top

mRNA from alignment at E-fasciculatus_F_contig16424:119..2375+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16424.4349.1 ID=mRNA_E-fasciculatus_F_contig16424.4349.1|Name=mRNA_E-fasciculatus_F_contig16424.4349.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2257bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16424:119..2375+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGACGCTTTTCTTCCCGCAGGACAAGAAGAACGGGCAAGGCCAAGAGGG TGCCGACAACGACAGAGAGGAAGGAGAAGGCGACGACAAAGACGACGATG ACGACGACTGCTGCCCCTACTCGTTCGACAAGGAGATCAGGCCTGAAGAC TTTACGGAGAGCGTGAGAGCTACTCTTACTCTGGACGACGACGACGCGCA CGCAGCGGCGGCTCGAGGGCTCGGGCGCTCTCTCACTGAAATGCCGAGGT ATTTGTGTGTGCGTCTCTCCCTCTCTCTGTCTGTCTCTCGCTACCAATAC TCGCTTTTTGTAGCGTCAGGTCCATCGCCCCAAAAGCGCCCTGCTGTTTT TATATTCTTCCATGCGCATGACCCGGAGTGTAGGCTATCGTTTGTCTCTC TACCCTAGACTATCCTCCAGTTCGATTCGATTTACATGCACCTATAGGCA CGACGCAATACTTTGTGTCTGATGGACATACCTATAGCCTAACACTCGGC ACTGCTAACATACCCAGCGTCGTGTTTTTGTGTGTTGCGGCGAAAGTTGT ACCGTTTCGACACCAGTCTATCTACGAAATCAAGTTTTCTTCATCGCCGA AGGAACACATCACTGGCACAAACTAACGCATTTGTACGTACGTCAAGCTC AAAGCGATGCAAGCCCGGCAAAATTTCACGTTACATTCATGAGAGTTTTA CGGGACAGCTGCCTAAATTTCTGCCCTAAATGTTCTACTTTTAGGTACTT TGGCTACCTGGGTATCGAGGATTTCACCACGAGCTCCTCTTTACCTTACC ACCCGCGGTCTTATCAAACGCCTGCGCACCGCTCCGCTCCCGCCACCAAC ACGAACAAACGAACGAACGAACGAACGCGCTATTACTGTAACATTAATAT TATATTTATATTAACATTAATAGGTGCCCCGGCTGCGGCGAGGCGTCCTC TCCCATGTCCCTGCTGTTCGACGAGGACTACGACAGCCACAGCTTCTACG ACTTCGAGAAGGCGGAGGACTGGTTCAAGGAGGCCGACGCCGTAGTGTTC GTCGGCACCTCTTTCGCCGTCACCCTTACCTGTTGAGTGCCCCCCCCCCC CCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNGAAGACTAAGCGCGTTC AGCGTACACCGGCTGCCTTTCGTTTGCTACATAGCAACCAGGCGTGTTGC CTGACGCACTACCTCAGCCACGTTGTCACCCCGACTACAGTACGTCGAAA AGAAGAGTTGGCTATGTTGACGACTGGCGCCGCCCTACCGAGAGACACGT AGGAACGTCTTTTCATCCCCCTAGTTATTGGCATACATTTTTTTTGTACA TATTTTCACCCCCCCGTCTCGGCCGCCCCGCTTCGCCCCCTCTTCGTCCC CGTCCCCGTTGTCCGCGTCGCGCCGTACAACAGCGTTGGCGATTCGAGAG GCGAAGCGGCGAAGCATACCGGTGTTCGACTTCAACGTGTCGGTGAGCCT CAAGTCCTCCCCCGCGCTGGACGCCAAGACCGTCCTCGGACGGGCGGAGG CCACCCTCCCGGCCCTCGCTAGCGCCGCGGGCGTGTCGATCGCGACCAAG GCTGCGGCTACGCCAACGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC GGCGGCGGCGATGGCAGAGAGCGCGATGGGAAACAGCGGCGGCAGCAACG ACGGCTCTTCAGACCGGGTCGCGGCACCTGCACCGGCGAGAGGGGAAGAC GGAGGGGAAGTTGTAGATGGGCGAACGTCTCCCGCTGCTACGACGAGCGG CGACGACTCTGAGTCTCCGCTTGGGAGGCGGCGGCGGCACGTGCGCGAGG AAGGTTCCTCCGGAGGCGGAAGCGGCGGCGGCGGCGGCGGCGGCGGCGGC GGCAGCAGCGGGGGTGATAGCAGCAGCAACGGCGACGTCCCGCGAGCCGA GGAAGAAGAAGACGAAGACGAACAAAACAGAGGCGCCAAGAGGGCCAAGT GTGTCTTGAATCCCGCTAATAGTGGCGGTGTTGCGGAGGTCGCCGTCGTT GGCGAGCCCGTGATGCAAATGGCAAGGCCGCCGCCGGCTGCAGGGGATGA CGGTGTGGCCTGGGGCGGGGGCGCGGAGTACCTGCTGGAGCCGGCGCTGG AGACCCCGCTCCGGAGGGATCAAGTGCGCGTCGACGTAGCCGAGGCATAC TCGAGAAAGCCGCACCCCGACCCTGAGGTGAGAGAAGGCGTCTCCGAACG GAGTTAG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16424:119..2375+

>mRNA_E-fasciculatus_F_contig16424.4349.1 ID=mRNA_E-fasciculatus_F_contig16424.4349.1|Name=mRNA_E-fasciculatus_F_contig16424.4349.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2460bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16424:119..2375+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGACGCTTTTCTTCCCGCAGGACAAGAAGAACGGGCAAGGCCAAGAGGG
TGCCGACAACGACAGAGAGGAAGGAGAAGGCGACGACAAAGACGACGATG
ACGACGACTGCTGCCCCTACTCGTTCGACAAGGAGATCAGGCCTGAAGAC
TTTACGGAGAGCGTGAGAGCTACTCTTACTCTGGACGACGACGACGCGCA
CGCAGCGGCGGCTCGAGGGCTCGGGCGCTCTCTCACTGAAATGCCGAGAT
GACGCTTTTCTTCCCGCAGGACAAGAAGAACGGGCAAGGCCAAGAGGGTG
CCGACAACGACAGAGAGGAAGGAGAAGGCGACGACAAAGACGACGATGAC
GACGACTGCTGCCCCTACTCGTTCGACAAGGAGATCAGGCCTGAAGACTT
TACGGAGAGCGTGAGAGCTACTCTTACTCTGGACGACGACGACGCGCACG
CAGCGGCGGCTCGAGGGCTCGGGCGCTCTCTCACTGAAATGCCGAGGTGC
CCCGGCTGCGGCGAGGCGTCCTCTCCCATGTCCCTGCTGTTCGACGAGGA
CTACGACAGCCACAGCTTCTACGACTTCGAGAAGGCGGAGGACTGGTTCA
AGGAGGCCGACGCCGTAGTGTTCGTCGGCACCTCTTTCGCCGTCACCCTT
ACCTGTGCCCCGGCTGCGGCGAGGCGTCCTCTCCCATGTCCCTGCTGTTC
GACGAGGACTACGACAGCCACAGCTTCTACGACTTCGAGAAGGCGGAGGA
CTGGTTCAAGGAGGCCGACGCCGTAGTGTTCGTCGGCACCTCTTTCGCCG
TCACCCTTACCTCGTTGGCGATTCGAGAGGCGAAGCGGCGAAGCATACCG
GTGTTCGACTTCAACGTGTCGGTGAGCCTCAAGTCCTCCCCCGCGCTGGA
CGCCAAGACCGTCCTCGGACGGGCGGAGGCCACCCTCCCGGCCCTCGCTA
GCGCCGCGGGCGTGTCGATCGCGACCAAGGCTGCGGCTACGCCAACGGCG
GCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGATGGCAGAGAG
CGCGATGGGAAACAGCGGCGGCAGCAACGACGGCTCTTCAGACCGGGTCG
CGGCACCTGCACCGGCGAGAGGGGAAGACGGAGGGGAAGTTGTAGATGGG
CGAACGTCTCCCGCTGCTACGACGAGCGGCGACGACTCTGAGTCTCCGCT
TGGGAGGCGGCGGCGGCACGTGCGCGAGGAAGGTTCCTCCGGAGGCGGAA
GCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCAGCGGGGGTGATAGC
AGCAGCAACGGCGACGTCCCGCGAGCCGAGGAAGAAGAAGACGAAGACGA
ACAAAACAGAGGCGCCAAGAGGGCCAAGTGTGTCTTGAATCCCGCTAATA
GTGGCGGTGTTGCGGAGGTCGCCGTCGTTGGCGAGCCCGTGATGCAAATG
GCAAGGCCGCCGCCGGCTGCAGGGGATGACGGTGTGGCCTGGGGCGGGGG
CGCGGAGTACCTGCTGGAGCCGGCGCTGGAGACCCCGCTCCGGAGGGATC
AAGTGCGCGTCGACGTAGCCGAGGCATACTCGAGAAAGCCGCACCCCGAC
CCTGAGGTGAGAGAAGGCGTCTCCGAACGGAGTTAGCGTTGGCGATTCGA
GAGGCGAAGCGGCGAAGCATACCGGTGTTCGACTTCAACGTGTCGGTGAG
CCTCAAGTCCTCCCCCGCGCTGGACGCCAAGACCGTCCTCGGACGGGCGG
AGGCCACCCTCCCGGCCCTCGCTAGCGCCGCGGGCGTGTCGATCGCGACC
AAGGCTGCGGCTACGCCAACGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC
GGCGGCGGCGGCGATGGCAGAGAGCGCGATGGGAAACAGCGGCGGCAGCA
ACGACGGCTCTTCAGACCGGGTCGCGGCACCTGCACCGGCGAGAGGGGAA
GACGGAGGGGAAGTTGTAGATGGGCGAACGTCTCCCGCTGCTACGACGAG
CGGCGACGACTCTGAGTCTCCGCTTGGGAGGCGGCGGCGGCACGTGCGCG
AGGAAGGTTCCTCCGGAGGCGGAAGCGGCGGCGGCGGCGGCGGCGGCGGC
GGCGGCAGCAGCGGGGGTGATAGCAGCAGCAACGGCGACGTCCCGCGAGC
CGAGGAAGAAGAAGACGAAGACGAACAAAACAGAGGCGCCAAGAGGGCCA
AGTGTGTCTTGAATCCCGCTAATAGTGGCGGTGTTGCGGAGGTCGCCGTC
GTTGGCGAGCCCGTGATGCAAATGGCAAGGCCGCCGCCGGCTGCAGGGGA
TGACGGTGTGGCCTGGGGCGGGGGCGCGGAGTACCTGCTGGAGCCGGCGC
TGGAGACCCCGCTCCGGAGGGATCAAGTGCGCGTCGACGTAGCCGAGGCA
TACTCGAGAAAGCCGCACCCCGACCCTGAGGTGAGAGAAGGCGTCTCCGA
ACGGAGTTAG
back to top